Robust Estimation of Risks from Small Samples
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Statistical Methods for Data Science, Lecture 5 Interval Estimates; Comparing Systems
Statistical methods for Data Science, Lecture 5 Interval estimates; comparing systems Richard Johansson November 18, 2018 statistical inference: overview I estimate the value of some parameter (last lecture): I what is the error rate of my drug test? I determine some interval that is very likely to contain the true value of the parameter (today): I interval estimate for the error rate I test some hypothesis about the parameter (today): I is the error rate significantly different from 0.03? I are users significantly more satisfied with web page A than with web page B? -20pt “recipes” I in this lecture, we’ll look at a few “recipes” that you’ll use in the assignment I interval estimate for a proportion (“heads probability”) I comparing a proportion to a specified value I comparing two proportions I additionally, we’ll see the standard method to compute an interval estimate for the mean of a normal I I will also post some pointers to additional tests I remember to check that the preconditions are satisfied: what kind of experiment? what assumptions about the data? -20pt overview interval estimates significance testing for the accuracy comparing two classifiers p-value fishing -20pt interval estimates I if we get some estimate by ML, can we say something about how reliable that estimate is? I informally, an interval estimate for the parameter p is an interval I = [plow ; phigh] so that the true value of the parameter is “likely” to be contained in I I for instance: with 95% probability, the error rate of the spam filter is in the interval [0:05; 0:08] -20pt frequentists and Bayesians again. -
Connection Between Dirichlet Distributions and a Scale-Invariant Probabilistic Model Based on Leibniz-Like Pyramids
Home Search Collections Journals About Contact us My IOPscience Connection between Dirichlet distributions and a scale-invariant probabilistic model based on Leibniz-like pyramids This content has been downloaded from IOPscience. Please scroll down to see the full text. View the table of contents for this issue, or go to the journal homepage for more Download details: IP Address: 152.84.125.254 This content was downloaded on 22/12/2014 at 23:17 Please note that terms and conditions apply. Journal of Statistical Mechanics: Theory and Experiment Connection between Dirichlet distributions and a scale-invariant probabilistic model based on J. Stat. Mech. Leibniz-like pyramids A Rodr´ıguez1 and C Tsallis2,3 1 Departamento de Matem´atica Aplicada a la Ingenier´ıa Aeroespacial, Universidad Polit´ecnica de Madrid, Pza. Cardenal Cisneros s/n, 28040 Madrid, Spain 2 Centro Brasileiro de Pesquisas F´ısicas and Instituto Nacional de Ciˆencia e Tecnologia de Sistemas Complexos, Rua Xavier Sigaud 150, 22290-180 Rio de Janeiro, Brazil (2014) P12027 3 Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA E-mail: [email protected] and [email protected] Received 4 November 2014 Accepted for publication 30 November 2014 Published 22 December 2014 Online at stacks.iop.org/JSTAT/2014/P12027 doi:10.1088/1742-5468/2014/12/P12027 Abstract. We show that the N limiting probability distributions of a recently introduced family of d→∞-dimensional scale-invariant probabilistic models based on Leibniz-like (d + 1)-dimensional hyperpyramids (Rodr´ıguez and Tsallis 2012 J. Math. Phys. 53 023302) are given by Dirichlet distributions for d = 1, 2, ... -
Distribution of Mutual Information
Distribution of Mutual Information Marcus Hutter IDSIA, Galleria 2, CH-6928 Manno-Lugano, Switzerland [email protected] http://www.idsia.ch/-marcus Abstract The mutual information of two random variables z and J with joint probabilities {7rij} is commonly used in learning Bayesian nets as well as in many other fields. The chances 7rij are usually estimated by the empirical sampling frequency nij In leading to a point es timate J(nij In) for the mutual information. To answer questions like "is J (nij In) consistent with zero?" or "what is the probability that the true mutual information is much larger than the point es timate?" one has to go beyond the point estimate. In the Bayesian framework one can answer these questions by utilizing a (second order) prior distribution p( 7r) comprising prior information about 7r. From the prior p(7r) one can compute the posterior p(7rln), from which the distribution p(Iln) of the mutual information can be cal culated. We derive reliable and quickly computable approximations for p(Iln). We concentrate on the mean, variance, skewness, and kurtosis, and non-informative priors. For the mean we also give an exact expression. Numerical issues and the range of validity are discussed. 1 Introduction The mutual information J (also called cross entropy) is a widely used information theoretic measure for the stochastic dependency of random variables [CT91, SooOO] . It is used, for instance, in learning Bayesian nets [Bun96, Hec98] , where stochasti cally dependent nodes shall be connected. The mutual information defined in (1) can be computed if the joint probabilities {7rij} of the two random variables z and J are known. -
Lecture 24: Dirichlet Distribution and Dirichlet Process
Stat260: Bayesian Modeling and Inference Lecture Date: April 28, 2010 Lecture 24: Dirichlet distribution and Dirichlet Process Lecturer: Michael I. Jordan Scribe: Vivek Ramamurthy 1 Introduction In the last couple of lectures, in our study of Bayesian nonparametric approaches, we considered the Chinese Restaurant Process, Bayesian mixture models, stick breaking, and the Dirichlet process. Today, we will try to gain some insight into the connection between the Dirichlet process and the Dirichlet distribution. 2 The Dirichlet distribution and P´olya urn First, we note an important relation between the Dirichlet distribution and the Gamma distribution, which is used to generate random vectors which are Dirichlet distributed. If, for i ∈ {1, 2, · · · , K}, Zi ∼ Gamma(αi, β) independently, then K K S = Zi ∼ Gamma αi, β i=1 i=1 ! X X and V = (V1, · · · ,VK ) = (Z1/S, · · · ,ZK /S) ∼ Dir(α1, · · · , αK ) Now, consider the following P´olya urn model. Suppose that • Xi - color of the ith draw • X - space of colors (discrete) • α(k) - number of balls of color k initially in urn. We then have that α(k) + j<i δXj (k) p(Xi = k|X1, · · · , Xi−1) = α(XP) + i − 1 where δXj (k) = 1 if Xj = k and 0 otherwise, and α(X ) = k α(k). It may then be shown that P n α(x1) α(xi) + j<i δXj (xi) p(X1 = x1, X2 = x2, · · · , X = x ) = n n α(X ) α(X ) + i − 1 i=2 P Y α(1)[α(1) + 1] · · · [α(1) + m1 − 1]α(2)[α(2) + 1] · · · [α(2) + m2 − 1] · · · α(C)[α(C) + 1] · · · [α(C) + m − 1] = C α(X )[α(X ) + 1] · · · [α(X ) + n − 1] n where 1, 2, · · · , C are the distinct colors that appear in x1, · · · ,xn and mk = i=1 1{Xi = k}. -
The Exciting Guide to Probability Distributions – Part 2
The Exciting Guide To Probability Distributions – Part 2 Jamie Frost – v1.1 Contents Part 2 A revisit of the multinomial distribution The Dirichlet Distribution The Beta Distribution Conjugate Priors The Gamma Distribution We saw in the last part that the multinomial distribution was over counts of outcomes, given the probability of each outcome and the total number of outcomes. xi f(x1, ... , xk | n, p1, ... , pk)= [n! / ∏xi!] ∏pi The count of The probability of each outcome. each outcome. That’s all smashing, but suppose we wanted to know the reverse, i.e. the probability that the distribution underlying our random variable has outcome probabilities of p1, ... , pk, given that we observed each outcome x1, ... , xk times. In other words, we are considering all the possible probability distributions (p1, ... , pk) that could have generated these counts, rather than all the possible counts given a fixed distribution. Initial attempt at a probability mass function: Just swap the domain and the parameters: The RHS is exactly the same. xi f(p1, ... , pk | n, x1, ... , xk )= [n! / ∏xi!] ∏pi Notational convention is that we define the support as a vector x, so let’s relabel p as x, and the counts x as α... αi f(x1, ... , xk | n, α1, ... , αk )= [n! / ∏ αi!] ∏xi We can define n just as the sum of the counts: αi f(x1, ... , xk | α1, ... , αk )= [(∑αi)! / ∏ αi!] ∏xi But wait, we’re not quite there yet. We know that probabilities have to sum to 1, so we need to restrict the domain we can draw from: s.t. -
Hyperprior on Symmetric Dirichlet Distribution
Hyperprior on symmetric Dirichlet distribution Jun Lu Computer Science, EPFL, Lausanne [email protected] November 5, 2018 Abstract In this article we introduce how to put vague hyperprior on Dirichlet distribution, and we update the parameter of it by adaptive rejection sampling (ARS). Finally we analyze this hyperprior in an over-fitted mixture model by some synthetic experiments. 1 Introduction It has become popular to use over-fitted mixture models in which number of cluster K is chosen as a conservative upper bound on the number of components under the expectation that only relatively few of the components K0 will be occupied by data points in the samples X . This kind of over-fitted mixture models has been successfully due to the ease in computation. Previously Rousseau & Mengersen(2011) proved that quite generally, the posterior behaviour of overfitted mixtures depends on the chosen prior on the weights, and on the number of free parameters in the emission distributions (here D, i.e. the dimension of data). Specifically, they have proved that (a) If α=min(αk; k ≤ K)>D=2 and if the number of components is larger than it should be, asymptotically two or more components in an overfitted mixture model will tend to merge with non-negligible weights. (b) −1=2 In contrast, if α=max(αk; k 6 K) < D=2, the extra components are emptied at a rate of N . Hence, if none of the components are small, it implies that K is probably not larger than K0. In the intermediate case, if min(αk; k ≤ K) ≤ D=2 ≤ max(αk; k 6 K), then the situation varies depending on the αk’s and on the difference between K and K0. -
Stat 5101 Lecture Slides: Deck 8 Dirichlet Distribution
Stat 5101 Lecture Slides: Deck 8 Dirichlet Distribution Charles J. Geyer School of Statistics University of Minnesota This work is licensed under a Creative Commons Attribution- ShareAlike 4.0 International License (http://creativecommons.org/ licenses/by-sa/4.0/). 1 The Dirichlet Distribution The Dirichlet Distribution is to the beta distribution as the multi- nomial distribution is to the binomial distribution. We get it by the same process that we got to the beta distribu- tion (slides 128{137, deck 3), only multivariate. Recall the basic theorem about gamma and beta (same slides referenced above). 2 The Dirichlet Distribution (cont.) Theorem 1. Suppose X and Y are independent gamma random variables X ∼ Gam(α1; λ) Y ∼ Gam(α2; λ) then U = X + Y V = X=(X + Y ) are independent random variables and U ∼ Gam(α1 + α2; λ) V ∼ Beta(α1; α2) 3 The Dirichlet Distribution (cont.) Corollary 1. Suppose X1;X2;:::; are are independent gamma random variables with the same shape parameters Xi ∼ Gam(αi; λ) then the following random variables X1 ∼ Beta(α1; α2) X1 + X2 X1 + X2 ∼ Beta(α1 + α2; α3) X1 + X2 + X3 . X1 + ··· + Xd−1 ∼ Beta(α1 + ··· + αd−1; αd) X1 + ··· + Xd are independent and have the asserted distributions. 4 The Dirichlet Distribution (cont.) From the first assertion of the theorem we know X1 + ··· + Xk−1 ∼ Gam(α1 + ··· + αk−1; λ) and is independent of Xk. Thus the second assertion of the theorem says X1 + ··· + Xk−1 ∼ Beta(α1 + ··· + αk−1; αk)(∗) X1 + ··· + Xk and (∗) is independent of X1 + ··· + Xk. That proves the corollary. 5 The Dirichlet Distribution (cont.) Theorem 2. -
A Dirichlet Process Mixture Model of Discrete Choice Arxiv:1801.06296V1
A Dirichlet Process Mixture Model of Discrete Choice 19 January, 2018 Rico Krueger (corresponding author) Research Centre for Integrated Transport Innovation, School of Civil and Environmental Engineering, UNSW Australia, Sydney NSW 2052, Australia [email protected] Akshay Vij Institute for Choice, University of South Australia 140 Arthur Street, North Sydney NSW 2060, Australia [email protected] Taha H. Rashidi Research Centre for Integrated Transport Innovation, School of Civil and Environmental Engineering, UNSW Australia, Sydney NSW 2052, Australia [email protected] arXiv:1801.06296v1 [stat.AP] 19 Jan 2018 1 Abstract We present a mixed multinomial logit (MNL) model, which leverages the truncated stick- breaking process representation of the Dirichlet process as a flexible nonparametric mixing distribution. The proposed model is a Dirichlet process mixture model and accommodates discrete representations of heterogeneity, like a latent class MNL model. Yet, unlike a latent class MNL model, the proposed discrete choice model does not require the analyst to fix the number of mixture components prior to estimation, as the complexity of the discrete mixing distribution is inferred from the evidence. For posterior inference in the proposed Dirichlet process mixture model of discrete choice, we derive an expectation maximisation algorithm. In a simulation study, we demonstrate that the proposed model framework can flexibly capture differently-shaped taste parameter distributions. Furthermore, we empirically validate the model framework in a case study on motorists’ route choice preferences and find that the proposed Dirichlet process mixture model of discrete choice outperforms a latent class MNL model and mixed MNL models with common parametric mixing distributions in terms of both in-sample fit and out-of-sample predictive ability. -
Points for Discussion
Bayesian Analysis in Medicine EPIB-677 Points for Discussion 1. Precisely what information does a p-value provide? 2. What is the correct (and incorrect) way to interpret a confi- dence interval? 3. What is Bayes Theorem? How does it operate? 4. Summary of above three points: What exactly does one learn about a parameter of interest after having done a frequentist analysis? Bayesian analysis? 5. Example 8 from the book chapter by Jim Berger. 6. Example 13 from the book chapter by Jim Berger. 7. Example 17 from the book chapter by Jim Berger. 8. Examples where there is a choice between a binomial or a negative binomial likelihood, found in the paper by Berger and Berry. 9. Problems with specifying prior distributions. 10. In what types of epidemiology data analysis situations are Bayesian methods particularly useful? 11. What does decision analysis add to a Bayesian analysis? 1. Precisely what information does a p-value provide? Recall the definition of a p-value: The probability of observing a test statistic as extreme as or more extreme than the observed value, as- suming that the null hypothesis is true. 2. What is the correct (and incorrect) way to interpret a confi- dence interval? Does a 95% confidence interval provide a 95% probability region for the true parameter value? If not, what it the correct interpretation? In practice, it is usually helpful to consider the following graphic: Figure 1: How to interpret confidence intervals and/or credible regions. Depending on where the confidence/credible interval lies in relation to a region of clinical equivalence, different conclusions can be drawn. -
The Bayesian New Statistics: Hypothesis Testing, Estimation, Meta-Analysis, and Power Analysis from a Bayesian Perspective
Published online: 2017-Feb-08 Corrected proofs submitted: 2017-Jan-16 Accepted: 2016-Dec-16 Published version at http://dx.doi.org/10.3758/s13423-016-1221-4 Revision 2 submitted: 2016-Nov-15 View only at http://rdcu.be/o6hd Editor action 2: 2016-Oct-12 In Press, Psychonomic Bulletin & Review. Revision 1 submitted: 2016-Apr-16 Version of November 15, 2016. Editor action 1: 2015-Aug-23 Initial submission: 2015-May-13 The Bayesian New Statistics: Hypothesis testing, estimation, meta-analysis, and power analysis from a Bayesian perspective John K. Kruschke and Torrin M. Liddell Indiana University, Bloomington, USA In the practice of data analysis, there is a conceptual distinction between hypothesis testing, on the one hand, and estimation with quantified uncertainty, on the other hand. Among frequentists in psychology a shift of emphasis from hypothesis testing to estimation has been dubbed “the New Statistics” (Cumming, 2014). A second conceptual distinction is between frequentist methods and Bayesian methods. Our main goal in this article is to explain how Bayesian methods achieve the goals of the New Statistics better than frequentist methods. The article reviews frequentist and Bayesian approaches to hypothesis testing and to estimation with confidence or credible intervals. The article also describes Bayesian approaches to meta-analysis, randomized controlled trials, and power analysis. Keywords: Null hypothesis significance testing, Bayesian inference, Bayes factor, confidence interval, credible interval, highest density interval, region of practical equivalence, meta-analysis, power analysis, effect size, randomized controlled trial. he New Statistics emphasizes a shift of empha- phasis. Bayesian methods provide a coherent framework for sis away from null hypothesis significance testing hypothesis testing, so when null hypothesis testing is the crux T (NHST) to “estimation based on effect sizes, confi- of the research then Bayesian null hypothesis testing should dence intervals, and meta-analysis” (Cumming, 2014, p. -
More on Bayesian Methods: Part II
More on Bayesian Methods: Part II Rebecca C. Steorts Bayesian Methods and Modern Statistics: STA 360/601 Lecture 5 1 Today's menu I Confidence intervals I Credible Intervals I Example 2 Confidence intervals vs credible intervals A confidence interval for an unknown (fixed) parameter θ is an interval of numbers that we believe is likely to contain the true value of θ: Intervals are important because they provide us with an idea of how well we can estimate θ: 3 Confidence intervals vs credible intervals I A confidence interval is constructed to contain θ a percentage of the time, say 95%. I Suppose our confidence level is 95% and our interval is (L; U). Then we are 95% confident that the true value of θ is contained in (L; U) in the long run. I In the long run means that this would occur nearly 95% of the time if we repeated our study millions and millions of times. 4 Common Misconceptions in Statistical Inference I A confidence interval is a statement about θ (a population parameter). I It is not a statement about the sample. I It is also not a statement about individual subjects in the population. 5 Common Misconceptions in Statistical Inference I Let a 95% confidence interval for the average amount of television watched by Americans be (2.69, 6.04) hours. I This doesn't mean we can say that 95% of all Americans watch between 2.69 and 6.04 hours of television. I We also cannot say that 95% of Americans in the sample watch between 2.69 and 6.04 hours of television. -
On the Frequentist Coverage of Bayesian Credible Intervals for Lower Bounded Means
Electronic Journal of Statistics Vol. 2 (2008) 1028–1042 ISSN: 1935-7524 DOI: 10.1214/08-EJS292 On the frequentist coverage of Bayesian credible intervals for lower bounded means Eric´ Marchand D´epartement de math´ematiques, Universit´ede Sherbrooke, Sherbrooke, Qc, CANADA, J1K 2R1 e-mail: [email protected] William E. Strawderman Department of Statistics, Rutgers University, 501 Hill Center, Busch Campus, Piscataway, N.J., USA 08854-8019 e-mail: [email protected] Keven Bosa Statistics Canada - Statistique Canada, 100, promenade Tunney’s Pasture, Ottawa, On, CANADA, K1A 0T6 e-mail: [email protected] Aziz Lmoudden D´epartement de math´ematiques, Universit´ede Sherbrooke, Sherbrooke, Qc, CANADA, J1K 2R1 e-mail: [email protected] Abstract: For estimating a lower bounded location or mean parameter for a symmetric and logconcave density, we investigate the frequentist per- formance of the 100(1 − α)% Bayesian HPD credible set associated with priors which are truncations of flat priors onto the restricted parameter space. Various new properties are obtained. Namely, we identify precisely where the minimum coverage is obtained and we show that this minimum 3α 3α α2 coverage is bounded between 1 − 2 and 1 − 2 + 1+α ; with the lower 3α bound 1 − 2 improving (for α ≤ 1/3) on the previously established ([9]; 1−α [8]) lower bound 1+α . Several illustrative examples are given. arXiv:0809.1027v2 [math.ST] 13 Nov 2008 AMS 2000 subject classifications: 62F10, 62F30, 62C10, 62C15, 35Q15, 45B05, 42A99. Keywords and phrases: Bayesian credible sets, restricted parameter space, confidence intervals, frequentist coverage probability, logconcavity.