Korn Shell Programming Cheat Sheet
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Shell Scripting with Bash
Introduction to Shell Scripting with Bash Charles Jahnke Research Computing Services Information Services & Technology Topics for Today ● Introductions ● Basic Terminology ● How to get help ● Command-line vs. Scripting ● Variables ● Handling Arguments ● Standard I/O, Pipes, and Redirection ● Control Structures (loops and If statements) ● SCC Job Submission Example Research Computing Services Research Computing Services (RCS) A group within Information Services & Technology at Boston University provides computing, storage, and visualization resources and services to support research that has specialized or highly intensive computation, storage, bandwidth, or graphics requirements. Three Primary Services: ● Research Computation ● Research Visualization ● Research Consulting and Training Breadth of Research on the Shared Computing Cluster (SCC) Me ● Research Facilitator and Administrator ● Background in biomedical engineering, bioinformatics, and IT systems ● Offices on both CRC and BUMC ○ Most of our staff on the Charles River Campus, some dedicated to BUMC ● Contact: [email protected] You ● Who has experience programming? ● Using Linux? ● Using the Shared Computing Cluster (SCC)? Basic Terminology The Command-line The line on which commands are typed and passed to the shell. Username Hostname Current Directory [username@scc1 ~]$ Prompt Command Line (input) The Shell ● The interface between the user and the operating system ● Program that interprets and executes input ● Provides: ○ Built-in commands ○ Programming control structures ○ Environment -
Beginning Portable Shell Scripting from Novice to Professional
Beginning Portable Shell Scripting From Novice to Professional Peter Seebach 10436fmfinal 1 10/23/08 10:40:24 PM Beginning Portable Shell Scripting: From Novice to Professional Copyright © 2008 by Peter Seebach All rights reserved. No part of this work may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage or retrieval system, without the prior written permission of the copyright owner and the publisher. ISBN-13 (pbk): 978-1-4302-1043-6 ISBN-10 (pbk): 1-4302-1043-5 ISBN-13 (electronic): 978-1-4302-1044-3 ISBN-10 (electronic): 1-4302-1044-3 Printed and bound in the United States of America 9 8 7 6 5 4 3 2 1 Trademarked names may appear in this book. Rather than use a trademark symbol with every occurrence of a trademarked name, we use the names only in an editorial fashion and to the benefit of the trademark owner, with no intention of infringement of the trademark. Lead Editor: Frank Pohlmann Technical Reviewer: Gary V. Vaughan Editorial Board: Clay Andres, Steve Anglin, Ewan Buckingham, Tony Campbell, Gary Cornell, Jonathan Gennick, Michelle Lowman, Matthew Moodie, Jeffrey Pepper, Frank Pohlmann, Ben Renow-Clarke, Dominic Shakeshaft, Matt Wade, Tom Welsh Project Manager: Richard Dal Porto Copy Editor: Kim Benbow Associate Production Director: Kari Brooks-Copony Production Editor: Katie Stence Compositor: Linda Weidemann, Wolf Creek Press Proofreader: Dan Shaw Indexer: Broccoli Information Management Cover Designer: Kurt Krames Manufacturing Director: Tom Debolski Distributed to the book trade worldwide by Springer-Verlag New York, Inc., 233 Spring Street, 6th Floor, New York, NY 10013. -
Use Perl Regular Expressions in SAS® Shuguang Zhang, WRDS, Philadelphia, PA
NESUG 2007 Programming Beyond the Basics Use Perl Regular Expressions in SAS® Shuguang Zhang, WRDS, Philadelphia, PA ABSTRACT Regular Expression (Regexp) enhance search and replace operations on text. In SAS®, the INDEX, SCAN and SUBSTR functions along with concatenation (||) can be used for simple search and replace operations on static text. These functions lack flexibility and make searching dynamic text difficult, and involve more function calls. Regexp combines most, if not all, of these steps into one expression. This makes code less error prone, easier to maintain, clearer, and can improve performance. This paper will discuss three ways to use Perl Regular Expression in SAS: 1. Use SAS PRX functions; 2. Use Perl Regular Expression with filename statement through a PIPE such as ‘Filename fileref PIPE 'Perl programm'; 3. Use an X command such as ‘X Perl_program’; Three typical uses of regular expressions will also be discussed and example(s) will be presented for each: 1. Test for a pattern of characters within a string; 2. Replace text; 3. Extract a substring. INTRODUCTION Perl is short for “Practical Extraction and Report Language". Larry Wall Created Perl in mid-1980s when he was trying to produce some reports from a Usenet-Nes-like hierarchy of files. Perl tries to fill the gap between low-level programming and high-level programming and it is easy, nearly unlimited, and fast. A regular expression, often called a pattern in Perl, is a template that either matches or does not match a given string. That is, there are an infinite number of possible text strings. -
A First Course to Openfoam
Basic Shell Scripting Slides from Wei Feinstein HPC User Services LSU HPC & LON [email protected] September 2018 Outline • Introduction to Linux Shell • Shell Scripting Basics • Variables/Special Characters • Arithmetic Operations • Arrays • Beyond Basic Shell Scripting – Flow Control – Functions • Advanced Text Processing Commands (grep, sed, awk) Basic Shell Scripting 2 Linux System Architecture Basic Shell Scripting 3 Linux Shell What is a Shell ▪ An application running on top of the kernel and provides a command line interface to the system ▪ Process user’s commands, gather input from user and execute programs ▪ Types of shell with varied features o sh o csh o ksh o bash o tcsh Basic Shell Scripting 4 Shell Comparison Software sh csh ksh bash tcsh Programming language y y y y y Shell variables y y y y y Command alias n y y y y Command history n y y y y Filename autocompletion n y* y* y y Command line editing n n y* y y Job control n y y y y *: not by default http://www.cis.rit.edu/class/simg211/unixintro/Shell.html Basic Shell Scripting 5 What can you do with a shell? ▪ Check the current shell ▪ echo $SHELL ▪ List available shells on the system ▪ cat /etc/shells ▪ Change to another shell ▪ csh ▪ Date ▪ date ▪ wget: get online files ▪ wget https://ftp.gnu.org/gnu/gcc/gcc-7.1.0/gcc-7.1.0.tar.gz ▪ Compile and run applications ▪ gcc hello.c –o hello ▪ ./hello ▪ What we need to learn today? o Automation of an entire script of commands! o Use the shell script to run jobs – Write job scripts Basic Shell Scripting 6 Shell Scripting ▪ Script: a program written for a software environment to automate execution of tasks ▪ A series of shell commands put together in a file ▪ When the script is executed, those commands will be executed one line at a time automatically ▪ Shell script is interpreted, not compiled. -
Bash Crash Course + Bc + Sed + Awk∗
Bash Crash course + bc + sed + awk∗ Andrey Lukyanenko, CSE, Aalto University Fall, 2011 There are many Unix shell programs: bash, sh, csh, tcsh, ksh, etc. The comparison of those can be found on-line 1. We will primary focus on the capabilities of bash v.4 shell2. 1. Each bash script can be considered as a text file which starts with #!/bin/bash. It informs the editor or interpretor which tries to open the file, what to do with the file and how should it be treated. The special character set in the beginning #! is a magic number; check man magic and /usr/share/file/magic on existing magic numbers if interested. 2. Each script (assume you created “scriptname.sh file) can be invoked by command <dir>/scriptname.sh in console, where <dir> is absolute or relative path to the script directory, e.g., ./scriptname.sh for current directory. If it has #! as the first line it will be invoked by this command, otherwise it can be called by command bash <dir>/scriptname.sh. Notice: to call script as ./scriptname.sh it has to be executable, i.e., call command chmod 555 scriptname.sh before- hand. 3. Variable in bash can be treated as integers or strings, depending on their value. There are set of operations and rules available for them. For example: #!/bin/bash var1=123 # Assigns value 123 to var1 echo var1 # Prints ’var1’ to output echo $var1 # Prints ’123’ to output var2 =321 # Error (var2: command not found) var2= 321 # Error (321: command not found) var2=321 # Correct var3=$var2 # Assigns value 321 from var2 to var3 echo $var3 # Prints ’321’ to output -
Shell Script Getopts Example
Shell Script Getopts Example Gail is constrainedly cryoscopic after delegable Hilbert sag his parcloses illuminatingly. Gonzales often tootle irresistibly when tripersonal Giordano discomposed dissonantly and buffer her Barbarossa. Robert misdraws rompishly. Find that getopts script example we use later will contain whitespace separation with command Instantly share code, notes, and snippets. OPTARG is set to the period character found. They cease in many cases unneeded and brief fact that cartoon always press them its just like matter of personal coding style. File or directory or found. Operator precedence is used when there within five is more arguments. Typically, shell scripts use getopts to parse arguments passed to them. There did many ways to against your remedy environment. Nothing gets printed when no command line options are provided. The return status is zero unless an outcome is encountered while determining the name avid the he directory within an invalid option is supplied. The exit code will be success failure. Log in charge use details from one require these accounts. How does log lumber and cpu usage by an application? Now consider running it bore an unsupported option. No need only pass the positional parameters through to borrow external program. How can I check took a directory exists in a candy shell script? What extent its purpose? When optional, the fashion can buckle on led off additional functionality, as ugly a boolean option. In those cases, it contains a pointer to that parameter. How environment check ride a variable is set to Bash? Connect and deploy knowledge write a single location that is structured and fatigue to search. -
Shell Scripting, Scripting Examples
Last Time… on the website Lecture 6 Shell Scripting What is a shell? • The user interface to the operating system • Functionality: – Execute other programs – Manage files – Manage processes • Full programming language • A program like any other – This is why there are so many shells Shell History • There are many choices for shells • Shell features evolved as UNIX grew Most Commonly Used Shells – /bin/csh C shell – /bin/tcsh Enhanced C Shell – /bin/sh The Bourne Shell / POSIX shell – /bin/ksh Korn shell – /bin/bash Korn shell clone, from GNU Ways to use the shell • Interactively – When you log in, you interactively use the shell • Scripting – A set of shell commands that constitute an executable program Review: UNIX Programs • Means of input: – Program arguments [control information] – Environment variables [state information] – Standard input [data] • Means of output: – Return status code [control information] – Standard out [data] – Standard error [error messages] Shell Scripts • A shell script is a regular text file that contains shell or UNIX commands – Before running it, it must have execute permission: • chmod +x filename • A script can be invoked as: – ksh name [ arg … ] – ksh < name [ args … ] – name [ arg …] Shell Scripts • When a script is run, the kernel determines which shell it is written for by examining the first line of the script – If 1st line starts with #!pathname-of-shell, then it invokes pathname and sends the script as an argument to be interpreted – If #! is not specified, the current shell assumes it is a script in its own language • leads to problems Simple Example #!/bin/sh echo Hello World Scripting vs. -
Php Tutorial
PHP About the Tutorial The PHP Hypertext Preprocessor (PHP) is a programming language that allows web developers to create dynamic content that interacts with databases. PHP is basically used for developing web-based software applications. This tutorial will help you understand the basics of PHP and how to put it in practice. Audience This tutorial has been designed to meet the requirements of all those readers who are keen to learn the basics of PHP. Prerequisites Before proceeding with this tutorial, you should have a basic understanding of computer programming, Internet, Database, and MySQL. Copyright & Disclaimer © Copyright 2016 by Tutorials Point (I) Pvt. Ltd. All the content and graphics published in this e-book are the property of Tutorials Point (I) Pvt. Ltd. The user of this e-book is prohibited to reuse, retain, copy, distribute or republish any contents or a part of contents of this e-book in any manner without written consent of the publisher. We strive to update the contents of our website and tutorials as timely and as precisely as possible, however, the contents may contain inaccuracies or errors. Tutorials Point (I) Pvt. Ltd. provides no guarantee regarding the accuracy, timeliness or completeness of our website or its contents including this tutorial. If you discover any errors on our website or in this tutorial, please notify us at [email protected] i PHP Table of Contents About the Tutorial ........................................................................................................................................... -
Unix (And Linux)
AWK....................................................................................................................................4 BC .....................................................................................................................................11 CHGRP .............................................................................................................................16 CHMOD.............................................................................................................................19 CHOWN ............................................................................................................................26 CP .....................................................................................................................................29 CRON................................................................................................................................34 CSH...................................................................................................................................36 CUT...................................................................................................................................71 DATE ................................................................................................................................75 DF .....................................................................................................................................79 DIFF ..................................................................................................................................84 -
Research Computing and Cyberinfrastructure Team
Research Computing and CyberInfrastructure team ! Working with the Linux Shell on the CWRU HPC 31 January 2019 7 February 2019 ! Presenter Emily Dragowsky KSL Data Center RCCI Team: Roger Bielefeld, Mike Warfe, Hadrian Djohari! Brian Christian, Emily Dragowsky, Jeremy Fondran, Cal Frye,! Sanjaya Gajurel, Matt Garvey, Theresa Griegger, Cindy Martin, ! Sean Maxwell, Jeno Mozes, Nasir Yilmaz, Lee Zickel Preface: Prepare your environment • User account ! # .bashrc ## cli essentials ! if [ -t 1 ] then bind '"\e[A": history-search-backward' bind '"\e[B": history-search-forward' bind '"\eOA": history-search-backward' bind '"\eOB": history-search-forward' fi ! This is too useful to pass up! Working with Linux • Preamble • Intro Session Linux Review: Finding our way • Files & Directories: Sample work flow • Shell Commands • Pipes & Redirection • Scripting Foundations • Shell & environment variables • Control Structures • Regular expressions & text manipulation • Recap & Look Ahead Rider Cluster Components ! rider.case.edu ondemand.case.edu University Firewall ! Admin Head Nodes SLURM Science Nodes Master DMZ Resource ! Data Manager Transfer Disk Storage Nodes Batch nodes GPU nodes SMP nodes Running a job: where is it? slide from Hadrian Djohari Storing Data on the HPC table from Nasir Yilmaz How data moves across campus • Buildings on campus are each assigned to a zone. Data connections go from every building to the distribution switch at the center of the zone and from there to the data centers at Kelvin Smith Library and Crawford Hall. slide -
Chapter 10 SHELL Substitution and I/O Operations
Chapter 10 SHELL Substitution and I/O Operations 10.1 Command Substitution Command substitution is the mechanism by which the shell performs a given set of commands and then substitutes their output in the place of the commands. Syntax: The command substitution is performed when a command is given as: `command` When performing command substitution make sure that you are using the backquote, not the single quote character. Example: Command substitution is generally used to assign the output of a command to a variable. Each of the following examples demonstrate command substitution: #!/bin/bash DATE=`date` echo "Date is $DATE" USERS=`who | wc -l` echo "Logged in user are $USERS" UP=`date ; uptime` echo "Uptime is $UP" This will produce following result: Date is Thu Jul 2 03:59:57 MST 2009 Logged in user are 1 Uptime is Thu Jul 2 03:59:57 MST 2009 03:59:57 up 20 days, 14:03, 1 user, load avg: 0.13, 0.07, 0.15 10.2 Shell Input/Output Redirections Most Unix system commands take input from your terminal and send the resulting output back to your terminal. A command normally reads its input from a place called standard input, which happens to be your terminal by default. Similarly, a command normally writes its output to standard output, which is also your terminal by default. Output Redirection: The output from a command normally intended for standard output can be easily diverted to a file instead. This capability is known as output redirection: If the notation > file is appended to any command that normally writes its output to standard output, the output of that command will be written to file instead of your terminal: Check following who command which would redirect complete output of the command in users file. -
Bash Guide for Beginners
Bash Guide for Beginners Machtelt Garrels Garrels BVBA <tille wants no spam _at_ garrels dot be> Version 1.11 Last updated 20081227 Edition Bash Guide for Beginners Table of Contents Introduction.........................................................................................................................................................1 1. Why this guide?...................................................................................................................................1 2. Who should read this book?.................................................................................................................1 3. New versions, translations and availability.........................................................................................2 4. Revision History..................................................................................................................................2 5. Contributions.......................................................................................................................................3 6. Feedback..............................................................................................................................................3 7. Copyright information.........................................................................................................................3 8. What do you need?...............................................................................................................................4 9. Conventions used in this