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An Annotated Draft Genome for Radix Auricularia (Gastropoda, Mollusca)
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Plymouth ElectronicGBE Archive and Research Library An Annotated Draft Genome for Radix auricularia (Gastropoda, Mollusca) Tilman Schell1,2,*, Barbara Feldmeyer2, Hanno Schmidt2, Bastian Greshake3, Oliver Tills4, Manuela Truebano4, Simon D. Rundle4, Juraj Paule5, Ingo Ebersberger2,3, and Markus Pfenninger1,2 1Molecular Ecology Group, Institute for Ecology, Evolution and Diversity, Goethe-University, Frankfurt am Main, Germany 2Adaptation and Climate, Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany 3Department for Applied Bioinformatics, Institute for Cell Biology and Neuroscience Goethe-University, Frankfurt am Main, Germany 4Marine Biology and Ecology Research Centre, Marine Institute, School of Marine Science and Engineering, Plymouth University, United Kingdom 5Department of Botany and Molecular Evolution, Senckenberg Research Institute, Frankfurt am Main, Germany *Corresponding author: E-mail: [email protected]. Accepted: February 14, 2017 Data deposition: This project has been deposited at NCBI under the accession PRJNA350764. Abstract Molluscs are the second most species-rich phylum in the animal kingdom, yet only 11 genomes of this group have been published so far. Here, we present the draft genome sequence of the pulmonate freshwater snail Radix auricularia. Six whole genome shotgun libraries with different layouts were sequenced. The resulting assembly comprises 4,823 scaffolds with a cumulative length of 910 Mb and an overall read coverage of 72Â. The assembly contains 94.6% of a metazoan core gene collection, indicating an almost complete coverage of the coding fraction. The discrepancy of ~ 690 Mb compared with the estimated genome size of R.
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Gastropoda, Mollusca)
bioRxiv preprint doi: https://doi.org/10.1101/087254; this version posted November 11, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. An annotated draft genome for Radix auricularia (Gastropoda, Mollusca) Tilman Schell 1,2 *, Barbara Feldmeyer 2, Hanno Schmidt 2, Bastian Greshake 3, Oliver Tills 4, Manuela Truebano 4, Simon D. Rundle 4, Juraj Paule 5, Ingo Ebersberger 3,2, Markus Pfenninger 1,2 1 Molecular Ecology Group, Institute for Ecology, Evolution and Diversity, Goethe-University, Frankfurt am Main, Germany 2 Adaptation and Climate, Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Germany 3 Department for Applied Bioinformatics, Institute for Cell Biology and Neuroscience, Goethe- University, Frankfurt am Main, Germany 4 Marine Biology and Ecology Research Centre, Marine Institute, School of Marine Science and Engineering, Plymouth University, Plymouth, United Kingdom 5 Department of Botany and Molecular Evolution, Senckenberg Research Institute, Frankfurt am Main, Germany * Author for Correspondence: Senckenberg Biodiversity and Climate Research Centre, Senckenberganlage 25, 60325 Frankfurt am Main, Germany. Tel.: +49 (0)69 75 42 18 30, E-mail: [email protected] Data deposition: BioProject: PRJNA350764, SRA: SRP092167 1 bioRxiv preprint doi: https://doi.org/10.1101/087254; this version posted November 11, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.
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UC Davis UC Davis Previously Published Works Title The limpet form in gastropods: Evolution, distribution, and implications for the comparative study of history Permalink https://escholarship.org/uc/item/8p93f8z8 Journal Biological Journal of the Linnean Society, 120(1) ISSN 0024-4066 Author Vermeij, GJ Publication Date 2017 DOI 10.1111/bij.12883 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Biological Journal of the Linnean Society, 2016, , – . With 1 ﬁgure. Biological Journal of the Linnean Society, 2017, 120 , 22–37. With 1 figures 2 G. J. VERMEIJ A B The limpet form in gastropods: evolution, distribution, and implications for the comparative study of history GEERAT J. VERMEIJ* Department of Earth and Planetary Science, University of California, Davis, Davis, CA,USA C D Received 19 April 2015; revised 30 June 2016; accepted for publication 30 June 2016 The limpet form – a cap-shaped or slipper-shaped univalved shell – convergently evolved in many gastropod lineages, but questions remain about when, how often, and under which circumstances it originated. Except for some predation-resistant limpets in shallow-water marine environments, limpets are not well adapted to intense competition and predation, leading to the prediction that they originated in refugial habitats where exposure to predators and competitors is low. A survey of fossil and living limpets indicates that the limpet form evolved independently in at least 54 lineages, with particularly frequent origins in early-diverging gastropod clades, as well as in Neritimorpha and Heterobranchia. There are at least 14 origins in freshwater and 10 in the deep sea, E F with known times ranging from the Cambrian to the Neogene.
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Cell and Tissue Research (2019) 377:475–503 https://doi.org/10.1007/s00441-019-03085-9 REVIEW Structure and function of the digestive system in molluscs Alexandre Lobo-da-Cunha1,2 Received: 21 February 2019 /Accepted: 26 July 2019 /Published online: 2 September 2019 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract The phylum Mollusca is one of the largest and more diversified among metazoan phyla, comprising many thousand species living in ocean, freshwater and terrestrial ecosystems. Mollusc-feeding biology is highly diverse, including omnivorous grazers, herbivores, carnivorous scavengers and predators, and even some parasitic species. Consequently, their digestive system presents many adaptive variations. The digestive tract starting in the mouth consists of the buccal cavity, oesophagus, stomach and intestine ending in the anus. Several types of glands are associated, namely, oral and salivary glands, oesophageal glands, digestive gland and, in some cases, anal glands. The digestive gland is the largest and more important for digestion and nutrient absorption. The digestive system of each of the eight extant molluscan classes is reviewed, highlighting the most recent data available on histological, ultrastructural and functional aspects of tissues and cells involved in nutrient absorption, intracellular and extracellular digestion, with emphasis on glandular tissues. Keywords Digestive tract . Digestive gland . Salivary glands . Mollusca . Ultrastructure Introduction and visceral mass. The visceral mass is dorsally covered by the mantle tissues that frequently extend outwards to create a The phylum Mollusca is considered the second largest among flap around the body forming a space in between known as metazoans, surpassed only by the arthropods in a number of pallial or mantle cavity.
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