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A Fast and Scalable Graph Coloring Algorithm for Multi-Core and Many-Core Architectures
A Fast and Scalable Graph Coloring Algorithm for Multi-core and Many-core Architectures Georgios Rokos1, Gerard Gorman2, and Paul H J Kelly1 1 Software Peroformance Optimisation Group, Department of Computing 2 Applied Modelling and Computation Group, Department of Earth Science and Engineering Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom, fgeorgios.rokos09,g.gorman,[email protected] Abstract. Irregular computations on unstructured data are an impor- tant class of problems for parallel programming. Graph coloring is often an important preprocessing step, e.g. as a way to perform dependency analysis for safe parallel execution. The total run time of a coloring algo- rithm adds to the overall parallel overhead of the application whereas the number of colors used determines the amount of exposed parallelism. A fast and scalable coloring algorithm using as few colors as possible is vi- tal for the overall parallel performance and scalability of many irregular applications that depend upon runtime dependency analysis. C¸ataly¨ureket al. have proposed a graph coloring algorithm which relies on speculative, local assignment of colors. In this paper we present an improved version which runs even more optimistically with less thread synchronization and reduced number of conflicts compared to C¸ataly¨urek et al.'s algorithm. We show that the new technique scales better on multi- core and many-core systems and performs up to 1.5x faster than its pre- decessor on graphs with high-degree vertices, while keeping the number of colors at the same near-optimal levels. Keywords: Graph Coloring; Greedy Coloring; First-Fit Coloring; Ir- regular Data; Parallel Graph Algorithms; Shared-Memory Parallelism; Optimistic Execution; Many-core Architectures; Intel®Xeon Phi™ 1 Introduction Many modern applications are built around algorithms which operate on irreg- ular data structures, usually in form of graphs. -
Lecture 10: April 20, 2005 Perfect Graphs
Re-revised notes 4-22-2005 10pm CMSC 27400-1/37200-1 Combinatorics and Probability Spring 2005 Lecture 10: April 20, 2005 Instructor: L´aszl´oBabai Scribe: Raghav Kulkarni TA SCHEDULE: TA sessions are held in Ryerson-255, Monday, Tuesday and Thursday 5:30{6:30pm. INSTRUCTOR'S EMAIL: [email protected] TA's EMAIL: [email protected], [email protected] IMPORTANT: Take-home test Friday, April 29, due Monday, May 2, before class. Perfect Graphs k 1=k Shannon capacity of a graph G is: Θ(G) := limk (α(G )) : !1 Exercise 10.1 Show that α(G) χ(G): (G is the complement of G:) ≤ Exercise 10.2 Show that χ(G H) χ(G)χ(H): · ≤ Exercise 10.3 Show that Θ(G) χ(G): ≤ So, α(G) Θ(G) χ(G): ≤ ≤ Definition: G is perfect if for all induced sugraphs H of G, α(H) = χ(H); i. e., the chromatic number is equal to the clique number. Theorem 10.4 (Lov´asz) G is perfect iff G is perfect. (This was open under the name \weak perfect graph conjecture.") Corollary 10.5 If G is perfect then Θ(G) = α(G) = χ(G): Exercise 10.6 (a) Kn is perfect. (b) All bipartite graphs are perfect. Exercise 10.7 Prove: If G is bipartite then G is perfect. Do not use Lov´asz'sTheorem (Theorem 10.4). 1 Lecture 10: April 20, 2005 2 The smallest imperfect (not perfect) graph is C5 : α(C5) = 2; χ(C5) = 3: For k 2, C2k+1 imperfect. -
I?'!'-Comparability Graphs
Discrete Mathematics 74 (1989) 173-200 173 North-Holland I?‘!‘-COMPARABILITYGRAPHS C.T. HOANG Department of Computer Science, Rutgers University, New Brunswick, NJ 08903, U.S.A. and B.A. REED Discrete Mathematics Group, Bell Communications Research, Morristown, NJ 07950, U.S.A. In 1981, Chv&tal defined the class of perfectly orderable graphs. This class of perfect graphs contains the comparability graphs. In this paper, we introduce a new class of perfectly orderable graphs, the &comparability graphs. This class generalizes comparability graphs in a natural way. We also prove a decomposition theorem which leads to a structural characteriza- tion of &comparability graphs. Using this characterization, we develop a polynomial-time recognition algorithm and polynomial-time algorithms for the clique and colouring problems for &comparability graphs. 1. Introduction A natural way to color the vertices of a graph is to put them in some order v*cv~<” l < v, and then assign colors in the following manner: (1) Consider the vertxes sequentially (in the sequence given by the order) (2) Assign to each Vi the smallest color (positive integer) not used on any neighbor vi of Vi with j c i. We shall call this the greedy coloring algorithm. An order < of a graph G is perfect if for each subgraph H of G, the greedy algorithm applied to H, gives an optimal coloring of H. An obstruction in a ordered graph (G, <) is a set of four vertices {a, b, c, d} with edges ab, bc, cd (and no other edge) and a c b, d CC. Clearly, if < is a perfect order on G, then (G, C) contains no obstruction (because the chromatic number of an obstruction is twu, but the greedy coloring algorithm uses three colors). -
Mutant Knots and Intersection Graphs 1 Introduction
Mutant knots and intersection graphs S. V. CHMUTOV S. K. LANDO We prove that if a finite order knot invariant does not distinguish mutant knots, then the corresponding weight system depends on the intersection graph of a chord diagram rather than on the diagram itself. Conversely, if we have a weight system depending only on the intersection graphs of chord diagrams, then the composition of such a weight system with the Kontsevich invariant determines a knot invariant that does not distinguish mutant knots. Thus, an equivalence between finite order invariants not distinguishing mutants and weight systems depending on intersections graphs only is established. We discuss relationship between our results and certain Lie algebra weight systems. 57M15; 57M25 1 Introduction Below, we use standard notions of the theory of finite order, or Vassiliev, invariants of knots in 3-space; their definitions can be found, for example, in [6] or [14], and we recall them briefly in Section 2. All knots are assumed to be oriented. Two knots are said to be mutant if they differ by a rotation of a tangle with four endpoints about either a vertical axis, or a horizontal axis, or an axis perpendicular to the paper. If necessary, the orientation inside the tangle may be replaced by the opposite one. Here is a famous example of mutant knots, the Conway (11n34) knot C of genus 3, and Kinoshita–Terasaka (11n42) knot KT of genus 2 (see [1]). C = KT = Note that the change of the orientation of a knot can be achieved by a mutation in the complement to a trivial tangle. -
Proper Interval Graphs and the Guard Problem 1
DISCRETE N~THEMATICS ELSEVIER Discrete Mathematics 170 (1997) 223-230 Note Proper interval graphs and the guard problem1 Chiuyuan Chen*, Chin-Chen Chang, Gerard J. Chang Department of Applied Mathematics, National Chiao Tung University, Hsinchu 30050, Taiwan Received 26 September 1995; revised 27 August 1996 Abstract This paper is a study of the hamiltonicity of proper interval graphs with applications to the guard problem in spiral polygons. We prove that proper interval graphs with ~> 2 vertices have hamiltonian paths, those with ~>3 vertices have hamiltonian cycles, and those with />4 vertices are hamiltonian-connected if and only if they are, respectively, 1-, 2-, or 3-connected. We also study the guard problem in spiral polygons by connecting the class of nontrivial connected proper interval graphs with the class of stick-intersection graphs of spiral polygons. Keywords." Proper interval graph; Hamiltonian path (cycle); Hamiltonian-connected; Guard; Visibility; Spiral polygon I. Introduction The main purpose of this paper is to study the hamiltonicity of proper interval graphs with applications to the guard problem in spiral polygons. Our terminology and graph notation are standard, see [2], except as indicated. The intersection graph of a family ~ of nonempty sets is derived by representing each set in ~ with a vertex and connecting two vertices with an edge if and only if their corresponding sets intersect. An interval graph is the intersection graph G of a family J of intervals on a real line. J is usually called the interval model for G. A proper interval graph is an interval graph with an interval model ~¢ such that no interval in J properly contains another. -
Classes of Graphs with Restricted Interval Models Andrzej Proskurowski, Jan Arne Telle
Classes of graphs with restricted interval models Andrzej Proskurowski, Jan Arne Telle To cite this version: Andrzej Proskurowski, Jan Arne Telle. Classes of graphs with restricted interval models. Discrete Mathematics and Theoretical Computer Science, DMTCS, 1999, 3 (4), pp.167-176. hal-00958935 HAL Id: hal-00958935 https://hal.inria.fr/hal-00958935 Submitted on 13 Mar 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Discrete Mathematics and Theoretical Computer Science 3, 1999, 167–176 Classes of graphs with restricted interval models ✁ Andrzej Proskurowski and Jan Arne Telle ✂ University of Oregon, Eugene, Oregon, USA ✄ University of Bergen, Bergen, Norway received June 30, 1997, revised Feb 18, 1999, accepted Apr 20, 1999. We introduce ☎ -proper interval graphs as interval graphs with interval models in which no interval is properly con- tained in more than ☎ other intervals, and also provide a forbidden induced subgraph characterization of this class of ✆✞✝✠✟ graphs. We initiate a graph-theoretic study of subgraphs of ☎ -proper interval graphs with maximum clique size and give an equivalent characterization of these graphs by restricted path-decomposition. By allowing the parameter ✆ ✆ ☎ to vary from 0 to , we obtain a nested hierarchy of graph families, from graphs of bandwidth at most to graphs of pathwidth at most ✆ . -
Regular Clique Covers of Graphs
Regular clique covers of graphs Dan Archdeacon Dept. of Math. and Stat. University of Vermont Burlington, VT 05405 USA [email protected] Dalibor Fronˇcek Dept. of Math. and Stat. Univ. of Minnesota Duluth Duluth, MN 55812-3000 USA and Technical Univ. Ostrava 70833Ostrava,CzechRepublic [email protected] Robert Jajcay Department of Mathematics Indiana State University Terre Haute, IN 47809 USA [email protected] Zdenˇek Ryj´aˇcek Department of Mathematics University of West Bohemia 306 14 Plzeˇn, Czech Republic [email protected] Jozef Sir´ˇ aˇn Department of Mathematics SvF Slovak Univ. of Technology 81368Bratislava,Slovakia [email protected] Australasian Journal of Combinatorics 27(2003), pp.307–316 Abstract A family of cliques in a graph G is said to be p-regular if any two cliques in the family intersect in exactly p vertices. A graph G is said to have a p-regular k-clique cover if there is a p-regular family H of k-cliques of G such that each edge of G belongs to a clique in H. Such a p-regular k- clique cover is separable if the complete subgraphs of order p that arise as intersections of pairs of distinct cliques of H are mutually vertex-disjoint. For any given integers p, k, ; p<k, we present bounds on the smallest order of a graph that has a p-regular k-clique cover with exactly cliques, and we describe all graphs that have p-regular separable k-clique covers with cliques. 1 Introduction An orthogonal double cover of a complete graph Kn by a graph H is a collection H of spanning subgraphs of Kn, all isomorphic to H, such that each edge of Kn is contained in exactly two subgraphs in H and any two distinct subgraphs in H share exactly one edge. -
A Class of Hypergraphs That Generalizes Chordal Graphs
MATH. SCAND. 106 (2010), 50–66 A CLASS OF HYPERGRAPHS THAT GENERALIZES CHORDAL GRAPHS ERIC EMTANDER Abstract In this paper we introduce a class of hypergraphs that we call chordal. We also extend the definition of triangulated hypergraphs, given by H. T. Hà and A. Van Tuyl, so that a triangulated hypergraph, according to our definition, is a natural generalization of a chordal (rigid circuit) graph. R. Fröberg has showed that the chordal graphs corresponds to graph algebras, R/I(G), with linear resolu- tions. We extend Fröberg’s method and show that the hypergraph algebras of generalized chordal hypergraphs, a class of hypergraphs that includes the chordal hypergraphs, have linear resolutions. The definitions we give, yield a natural higher dimensional version of the well known flag property of simplicial complexes. We obtain what we call d-flag complexes. 1. Introduction and preliminaries Let X be a finite set and E ={E1,...,Es } a finite collection of non empty subsets of X . The pair H = (X, E ) is called a hypergraph. The elements of X and E , respectively, are called the vertices and the edges, respectively, of the hypergraph. If we want to specify what hypergraph we consider, we may write X (H ) and E (H ) for the vertices and edges respectively. A hypergraph is called simple if: (1) |Ei |≥2 for all i = 1,...,s and (2) Ej ⊆ Ei only if i = j. If the cardinality of X is n we often just use the set [n] ={1, 2,...,n} instead of X . Let H be a hypergraph. A subhypergraph K of H is a hypergraph such that X (K ) ⊆ X (H ), and E (K ) ⊆ E (H ).IfY ⊆ X , the induced hypergraph on Y, HY , is the subhypergraph with X (HY ) = Y and with E (HY ) consisting of the edges of H that lie entirely in Y. -
The Strong Perfect Graph Theorem
Annals of Mathematics, 164 (2006), 51–229 The strong perfect graph theorem ∗ ∗ By Maria Chudnovsky, Neil Robertson, Paul Seymour, * ∗∗∗ and Robin Thomas Abstract A graph G is perfect if for every induced subgraph H, the chromatic number of H equals the size of the largest complete subgraph of H, and G is Berge if no induced subgraph of G is an odd cycle of length at least five or the complement of one. The “strong perfect graph conjecture” (Berge, 1961) asserts that a graph is perfect if and only if it is Berge. A stronger conjecture was made recently by Conforti, Cornu´ejols and Vuˇskovi´c — that every Berge graph either falls into one of a few basic classes, or admits one of a few kinds of separation (designed so that a minimum counterexample to Berge’s conjecture cannot have either of these properties). In this paper we prove both of these conjectures. 1. Introduction We begin with definitions of some of our terms which may be nonstandard. All graphs in this paper are finite and simple. The complement G of a graph G has the same vertex set as G, and distinct vertices u, v are adjacent in G just when they are not adjacent in G.Ahole of G is an induced subgraph of G which is a cycle of length at least 4. An antihole of G is an induced subgraph of G whose complement is a hole in G. A graph G is Berge if every hole and antihole of G has even length. A clique in G is a subset X of V (G) such that every two members of X are adjacent. -
5Th Lecture : Modular Decomposition MPRI 2013–2014 Schedule A
5th Lecture : Modular decomposition MPRI 2013–2014 5th Lecture : Modular decomposition MPRI 2013–2014 Schedule 5th Lecture : Modular decomposition Introduction MPRI 2013–2014 Graph searches Michel Habib Applications of LBFS on structured graph classes [email protected] http://www.liafa.univ-Paris-Diderot.fr/~habib Chordal graphs Cograph recognition Sophie Germain, 22 octobre 2013 A nice conjecture 5th Lecture : Modular decomposition MPRI 2013–2014 5th Lecture : Modular decomposition MPRI 2013–2014 Introduction A hierarchy of graph models 1. Undirected graphs (graphes non orient´es) 2. Tournaments (Tournois), sometimes 2-circuits are allowed. 3. Signed graphs (Graphes sign´es) each edge is labelled + or - (for example friend or enemy) Examen le mardi 26 novembre de 9h `a12h 4. Oriented graphs (Graphes orient´es), each edge is given a Salle habituelle unique direction (no 2-circuits) An interesting subclass are the DAG Directed Acyclic Graphs (graphes sans circuit), for which the transitive closure is a partial order (ordre partiel) 5. Partial orders and comparability graphs an intersting particular case. Duality comparability – cocomparability (graphes de comparabilit´e– graphes d’incomparabilit´e) 6. Directed graphs or digraphs (Graphes dirig´es) 5th Lecture : Modular decomposition MPRI 2013–2014 5th Lecture : Modular decomposition MPRI 2013–2014 Introduction Introduction The problem has to be defined in each model and sometimes it could be hard. ◮ What is the right notion for a coloration in a directed graph ? For partial orders, comparability graphs or uncomparability graphs ◮ No directed cycle unicolored, seems to be the good one. the independant set and maximum clique problems are polynomial. ◮ It took 20 years to find the right notion of oriented matro¨ıd ◮ What is the right notion of treewidth for directed graphs ? ◮ Still an open question. -
Representations of Edge Intersection Graphs of Paths in a Tree Martin Charles Golumbic, Marina Lipshteyn, Michal Stern
Representations of Edge Intersection Graphs of Paths in a Tree Martin Charles Golumbic, Marina Lipshteyn, Michal Stern To cite this version: Martin Charles Golumbic, Marina Lipshteyn, Michal Stern. Representations of Edge Intersection Graphs of Paths in a Tree. 2005 European Conference on Combinatorics, Graph Theory and Appli- cations (EuroComb ’05), 2005, Berlin, Germany. pp.87-92. hal-01184396 HAL Id: hal-01184396 https://hal.inria.fr/hal-01184396 Submitted on 14 Aug 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. EuroComb 2005 DMTCS proc. AE, 2005, 87–92 Representations of Edge Intersection Graphs of Paths in a Tree Martin Charles Golumbic1,† Marina Lipshteyn1 and Michal Stern1 1Caesarea Rothschild Institute, University of Haifa, Haifa, Israel Let P be a collection of nontrivial simple paths in a tree T . The edge intersection graph of P, denoted by EP T (P), has vertex set that corresponds to the members of P, and two vertices are joined by an edge if the corresponding members of P share a common edge in T . An undirected graph G is called an edge intersection graph of paths in a tree, if G = EP T (P) for some P and T . -
Approximating the Minimum Clique Cover and Other Hard Problems in Subtree filament Graphs
Approximating the minimum clique cover and other hard problems in subtree filament graphs J. Mark Keil∗ Lorna Stewart† March 20, 2006 Abstract Subtree filament graphs are the intersection graphs of subtree filaments in a tree. This class of graphs contains subtree overlap graphs, interval filament graphs, chordal graphs, circle graphs, circular-arc graphs, cocomparability graphs, and polygon-circle graphs. In this paper we show that, for circle graphs, the clique cover problem is NP-complete and the h-clique cover problem for fixed h is solvable in polynomial time. We then present a general scheme for developing approximation algorithms for subtree filament graphs, and give approximation algorithms developed from the scheme for the following problems which are NP-complete on circle graphs and therefore on subtree filament graphs: clique cover, vertex colouring, maximum k-colourable subgraph, and maximum h-coverable subgraph. Key Words: subtree filament graph, circle graph, clique cover, NP-complete, approximation algorithm. 1 Introduction Subtree filament graphs were defined in [10] to be the intersection graphs of subtree filaments in a tree, as follows. Consider a tree T = (VT ,ET ) and a multiset of n ≥ 1 subtrees {Ti | 1 ≤ i ≤ n} of T . Let T be embedded in a plane P , and consider the surface S that is perpendicular to P , such that the intersection of S with P is T . A subtree filament corresponding to subtree Ti of T is a connected curve in S, above P , connecting all the leaves of Ti, such that, for all 1 ≤ i ≤ n: • if Ti ∩ Tj = ∅ then the filaments corresponding to Ti and Tj do not intersect, and ∗Department of Computer Science, University of Saskatchewan, Saskatoon, Saskatchewan, Canada, S7N 5C9, [email protected], 306-966-4894.