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Distribution of Barley Yellow Dwarf Virus-PAV in the Sub-Antarctic
Distribution of Barley yellow dwarf virus-PAV in the Sub-Antarctic Kerguelen Islands and characterization of two new [i]Luteovirus[/i] species Laurence Svanella-Dumas, Thierry Candresse, Maurice Hullé, Armelle Marais-Colombel To cite this version: Laurence Svanella-Dumas, Thierry Candresse, Maurice Hullé, Armelle Marais-Colombel. Distribution of Barley yellow dwarf virus-PAV in the Sub-Antarctic Kerguelen Islands and characterization of two new [i]Luteovirus[/i] species. PLoS ONE, Public Library of Science, 2013, 8 (6), pp.e67231. 10.1371/journal.pone.0067231. hal-01208609 HAL Id: hal-01208609 https://hal.archives-ouvertes.fr/hal-01208609 Submitted on 29 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distribution of Barley yellow dwarf virus-PAV in the Sub- Antarctic Kerguelen Islands and Characterization of Two New Luteovirus Species Laurence Svanella-Dumas1,2, Thierry Candresse1,2, Maurice Hulle´ 3, Armelle Marais1,2* 1 INRA, UMR 1332 de Biologie du Fruit et Pathologie, CS20032 Villenave d9Ornon, France, 2 Univ. Bordeaux, UMR 1332 de Biologie du Fruit et Pathologie, CS20032 Villenave d9Ornon, France, 3 Institut de Ge´ne´tique, Environnement et Protection des Plantes, Agrocampus Rennes, UMR INRA 1349, BP 35327, Le Rheu, France Abstract A systematic search for viral infection was performed in the isolated Kerguelen Islands, using a range of polyvalent genus- specific PCR assays. -
The Stability of Lytic Sulfolobus Viruses
The Stability of Lytic Sulfolobus Viruses A thesis submitted to the Graduate School of the University of Cincinnati In partial fulfillment of The requirements for the degree of Master of Sciences in the Department of Biological Sciences of the College of Arts and Sciences 2017 Khaled S. Gazi B.S. Umm Al-Qura University, 2011 Committee Chair: Dennis W. Grogan, Ph.D. i Abstract Among the three domains of cellular life, archaea are the least understood, and functional information about archaeal viruses is very limited. For example, it is not known whether many of the viruses that infect hyperthermophilic archaea retain infectivity for long periods of time under the extreme conditions of geothermal environments. To investigate the capability of viruses to Infect under the extreme conditions of geothermal environments. A number of plaque- forming viruses related to Sulfolobus islandicus rod-shaped viruses (SIRVs), isolated from Yellowstone National Park in a previous study, were evaluated for stability under different stress conditions including high temperature, drying, and extremes of pH. Screening of 34 isolates revealed a 95-fold range of survival with respect to boiling for two hours and 94-fold range with respect to drying for 24 hours. Comparison of 10 viral strains chosen to represent the extremes of this range showed little correlation of stability with respect to different stresses. For example, three viral strains survived boiling but not drying. On the other hand, five strains that survived the drying stress did not survive the boiling temperature, whereas one strain survived both treatments and the last strain showed low survival of both. -
Zerohack Zer0pwn Youranonnews Yevgeniy Anikin Yes Men
Zerohack Zer0Pwn YourAnonNews Yevgeniy Anikin Yes Men YamaTough Xtreme x-Leader xenu xen0nymous www.oem.com.mx www.nytimes.com/pages/world/asia/index.html www.informador.com.mx www.futuregov.asia www.cronica.com.mx www.asiapacificsecuritymagazine.com Worm Wolfy Withdrawal* WillyFoReal Wikileaks IRC 88.80.16.13/9999 IRC Channel WikiLeaks WiiSpellWhy whitekidney Wells Fargo weed WallRoad w0rmware Vulnerability Vladislav Khorokhorin Visa Inc. Virus Virgin Islands "Viewpointe Archive Services, LLC" Versability Verizon Venezuela Vegas Vatican City USB US Trust US Bankcorp Uruguay Uran0n unusedcrayon United Kingdom UnicormCr3w unfittoprint unelected.org UndisclosedAnon Ukraine UGNazi ua_musti_1905 U.S. Bankcorp TYLER Turkey trosec113 Trojan Horse Trojan Trivette TriCk Tribalzer0 Transnistria transaction Traitor traffic court Tradecraft Trade Secrets "Total System Services, Inc." Topiary Top Secret Tom Stracener TibitXimer Thumb Drive Thomson Reuters TheWikiBoat thepeoplescause the_infecti0n The Unknowns The UnderTaker The Syrian electronic army The Jokerhack Thailand ThaCosmo th3j35t3r testeux1 TEST Telecomix TehWongZ Teddy Bigglesworth TeaMp0isoN TeamHav0k Team Ghost Shell Team Digi7al tdl4 taxes TARP tango down Tampa Tammy Shapiro Taiwan Tabu T0x1c t0wN T.A.R.P. Syrian Electronic Army syndiv Symantec Corporation Switzerland Swingers Club SWIFT Sweden Swan SwaggSec Swagg Security "SunGard Data Systems, Inc." Stuxnet Stringer Streamroller Stole* Sterlok SteelAnne st0rm SQLi Spyware Spying Spydevilz Spy Camera Sposed Spook Spoofing Splendide -
Pip), Specifically Those Based on Plant Viral Coat Proteins (Pvcp-Pips
FIFRA SCIENTIFIC ADVISORY PANEL (SAP) OPEN MEETING OCTOBER 13 - 15, 2004 ISSUES ASSOCIATED WITH DEPLOYMENT OF A TYPE OF PLANT-INCORPORATED PROTECTANT (PIP), SPECIFICALLY THOSE BASED ON PLANT VIRAL COAT PROTEINS (PVCP-PIPS) WEDNESDAY, OCTOBER 13, 2004 VOLUME I OF IV (Morning session) Located at: Holiday Inn - National Airport 2650 Jefferson Davis Highway Arlington, VA 22202 Reported by: Frances M. Freeman, Stenographer 2 1 C O N T E N T S 2 3 Proceedings...........................Page 3 3 1 DR. ROBERTS: Good morning. And welcome to the 2 October 13th meeting of the FIFRA Scientific Advisory 3 Panel. 4 The topic that we're going to address in our 5 session over the next couple of days are issues associated 6 with deployment of a type of plant incorporated 7 protectant, specifically those based on plant viral coat 8 proteins. 9 The SAP staff has assembled an outstanding, 10 truly outstanding panel of experts, I think, to address 11 questions that the agency are posing on this topic. 12 I would like to begin today's session by 13 introducing the panel. Let me do so by starting on my 14 left and we'll just kind of go around the table clockwise. 15 Among the panel members I would ask each to state their 16 name, their affiliation and their area of expertise. 17 Beginning with Dr. Melcher. 18 DR. MELCHER: I'm Ulrich Melcher from Oklahoma 19 State University, in biochemistry and molecular biology. 20 I'm a plant virologist with expertise in recombination and 21 bioinformatics. 4 1 DR. -
Exploration of the Propagation of Transpovirons Within Mimiviridae Reveals a Unique Example of Commensalism in the Viral World
The ISME Journal (2020) 14:727–739 https://doi.org/10.1038/s41396-019-0565-y ARTICLE Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world 1 1 1 1 1 Sandra Jeudy ● Lionel Bertaux ● Jean-Marie Alempic ● Audrey Lartigue ● Matthieu Legendre ● 2 1 1 2 3 4 Lucid Belmudes ● Sébastien Santini ● Nadège Philippe ● Laure Beucher ● Emanuele G. Biondi ● Sissel Juul ● 4 2 1 1 Daniel J. Turner ● Yohann Couté ● Jean-Michel Claverie ● Chantal Abergel Received: 9 September 2019 / Revised: 27 November 2019 / Accepted: 28 November 2019 / Published online: 10 December 2019 © The Author(s) 2019. This article is published with open access Abstract Acanthamoeba-infecting Mimiviridae are giant viruses with dsDNA genome up to 1.5 Mb. They build viral factories in the host cytoplasm in which the nuclear-like virus-encoded functions take place. They are themselves the target of infections by 20-kb-dsDNA virophages, replicating in the giant virus factories and can also be found associated with 7-kb-DNA episomes, dubbed transpovirons. Here we isolated a virophage (Zamilon vitis) and two transpovirons respectively associated to B- and C-clade mimiviruses. We found that the virophage could transfer each transpoviron provided the host viruses were devoid of 1234567890();,: 1234567890();,: a resident transpoviron (permissive effect). If not, only the resident transpoviron originally isolated from the corresponding virus was replicated and propagated within the virophage progeny (dominance effect). Although B- and C-clade viruses devoid of transpoviron could replicate each transpoviron, they did it with a lower efficiency across clades, suggesting an ongoing process of adaptive co-evolution. -
In-Depth Study of Mollivirus Sibericum, a New 30000-Y-Old Giant
In-depth study of Mollivirus sibericum, a new 30,000-y- PNAS PLUS old giant virus infecting Acanthamoeba Matthieu Legendrea,1, Audrey Lartiguea,1, Lionel Bertauxa, Sandra Jeudya, Julia Bartolia,2, Magali Lescota, Jean-Marie Alempica, Claire Ramusb,c,d, Christophe Bruleyb,c,d, Karine Labadiee, Lyubov Shmakovaf, Elizaveta Rivkinaf, Yohann Coutéb,c,d, Chantal Abergela,3, and Jean-Michel Claveriea,g,3 aInformation Génomique and Structurale, Unité Mixte de Recherche 7256 (Institut de Microbiologie de la Méditerranée, FR3479) Centre National de la Recherche Scientifique, Aix-Marseille Université, 13288 Marseille Cedex 9, France; bUniversité Grenoble Alpes, Institut de Recherches en Technologies et Sciences pour le Vivant–Laboratoire Biologie à Grande Echelle, F-38000 Grenoble, France; cCommissariat à l’Energie Atomique, Centre National de la Recherche Scientifique, Institut de Recherches en Technologies et Sciences pour le Vivant–Laboratoire Biologie à Grande Echelle, F-38000 Grenoble, France; dINSERM, Laboratoire Biologie à Grande Echelle, F-38000 Grenoble, France; eCommissariat à l’Energie Atomique, Institut de Génomique, Centre National de Séquençage, 91057 Evry Cedex, France; fInstitute of Physicochemical and Biological Problems in Soil Science, Russian Academy of Sciences, Pushchino 142290, Russia; and gAssistance Publique–Hopitaux de Marseille, 13385 Marseille, France Edited by James L. Van Etten, University of Nebraska, Lincoln, NE, and approved August 12, 2015 (received for review June 2, 2015) Acanthamoeba species are infected by the largest known DNA genome was recently made available [Pandoravirus inopinatum (15)]. viruses. These include icosahedral Mimiviruses, amphora-shaped Pan- These genomes encode a number of predicted proteins comparable doraviruses, and Pithovirus sibericum, the latter one isolated from to that of the most reduced parasitic unicellular eukaryotes, such as 30,000-y-old permafrost. -
United States Patent 19 11 Patent Number: 5,626,851 Clark Et Al
USOO5626851A United States Patent 19 11 Patent Number: 5,626,851 Clark et al. 45) Date of Patent: May 6, 1997 54) ROTAVIRUS REASSORTANT WACCNE H F. Clark et al. 'Rotavirus Vaccines'. Vaccines, Plotkin S.A., Mortimer E.A., eds. (Phildelphia, W.B. Saunders), pp. 75 Inventors: H. Fred Clark; Paul Offit, both of 517-525 (1988) (Clark II). Philadelphia, Pa.; Stanley A. Plotkin, HF. Clarket al. “Approaches to Immune Protection Against Paris, France Rotavirus Diarrhea of Infants", Immunization Monitor, 73) Assignees: The Wistar Institute of Anatomy and 3(3):3-15 (Aug. 1989) Clark III). Biology; The Children's Hospital of H F. Clarket al., "Serotype 1 Reassortant of Bovine Rotavi Philadelphia, both of Philadelphia, Pa. rus WC3. Strain WI79-9, Induces a Polytypic Antibody Response in Infants". Vaccine, 8:327-332 (Aug. 1990) (21) Appl. No.: 353,547 Clark IV). H. F. Clark et al., “Immune Protection of Infants Against 22 Filed: Dec. 9, 1994 Rotavirus Gastroenteritis by a Serotype 1 Reassortant of Related U.S. Application Data Bovine Rotavirus WC3', J. Infect. Dis. 161: 1099-1104 (Jun., 1990) Clark V. 63 Continuation-in-part of Ser. No. 121220, Sep. 14, 1990, abandoned, and Ser. No. 249,696, May 26, 1994, aban H. F. Clarket al., “Immune Response of Infants and Children doned, which is a continuation of Ser. No. 902,321, Jun. 22, to Low-Passage Bovine Rotavirus (Strain WC3)", Amer. J. 1992, abandoned, which is a continuation-in-part of Ser. No. Dis. Child. 140:350-356 (Apr. 1986) Clark VI. 558,884, Jul. 2, 1990, abandoned, which is a continuation in-part of Ser. -
Structural Studies of Large Dsdna Viruses Using Single Particle Methods
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1847 Structural Studies of Large dsDNA Viruses using Single Particle Methods HEMANTH KUMAR NARAYANA REDDY ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 ISBN 978-91-513-0732-9 UPPSALA urn:nbn:se:uu:diva-391671 2019 Dissertation presented at Uppsala University to be publicly examined in Room C2:301, BMC, Husargatan 3, Uppsala, Friday, 11 October 2019 at 13:00 for the degree of Doctor of Philosophy. The examination will be conducted in English. Faculty examiner: Professor Sarah Butcher (University of Helsinki). Abstract Narayana Reddy, H. K. 2019. Structural Studies of Large dsDNA Viruses using Single Particle Methods. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1847. 72 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-513-0732-9. Structural studies of large biological assemblies pose a unique problem due to their size, complexity and heterogeneity. Conventional methods like x-ray crystallography, NMR, etc. are limited in their ability to address these issues. To overcome some of these limitations, single particle methods were used. In these methods, each particle image is manipulated individually to find the best possible set of images to reconstruct the 3D structure. The structural studies in this thesis, exploit the advantages of single particle methods. The large data set generated by the SPI study of PR772 provides better statistics about the sample quality due to the use of GDVN, a container-free sample delivery method. By analyzing the diffusion map, we see that the use of GDVNs as a sample delivery method produces wide range of particle sizes owing to the large droplet that are created. -
Problem Drill 08: Bacterial and Viral Genetics Q
Genetics - Problem Drill 08: Bacterial and Viral Genetics Question No. 1 of 10 Instructions: (1) Read the problem and answer choices carefully (2) Work the problems on paper as needed (3) Pick the answer (4) Go back to review the core concept tutorial as needed. 1. In a transduction experiment, phage P1 is grown on a bacterial host of genotype A+ B+ C+ and the resulting lysate is used to infect a recipient strain of genotype A– B–C–. Transductants are obtained by selecting for the A+ phenotype. The genes are in an order, such that B is in the middle, and the distance between A and B is greater than the distance between B and C. Based on this information, which of the following statements is true? (A) If none of the A+ transductants were also C+, then the distance between A and C would be greater than about 100 kbp. (B) The cotransduction distance between A and B can be obtained from the Question fraction of A+ transductants that are A+ B+ C+ and A+ B+ C–. (C) It is possible that the cotransduction distance between A and C could be 0%. (D) The number of A+ transductants that are B– and C+ will be much smaller than the number of A+ transductants that are B+ and C–. (E) The number of A+B+ transductants will be greater than B+C+ transductants. A. Incorrect! From the given condition, we know the distance between A and C is greater than the distance between A and B, but there is not enough information to determine physically how many base pairs away. -
The Virophage Family Lavidaviridae
The Virophage Family Lavidaviridae Matthias G. Fischer1* 1Department of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Heidelberg, Germany. *Correspondence: [email protected] htps://doi.org/10.21775/cimb.040.001 Abstract Introduction Double-stranded (ds) DNA viruses of the family Virophages are a recently discovered class of dou- Lavidaviridae, commonly known as virophages, ble-stranded (ds) DNA viruses that have evolved a are a fascinating group of eukaryotic viruses that dependency on complex dsDNA viruses of eukary- depend on a coinfecting giant dsDNA virus of otes, so-called giant viruses. Te discovery of giant the Mimiviridae for their propagation. Instead of viruses was therefore a prerequisite for the isolation replicating in the nucleus, virophages multiply and characterization of virophages (see Fig. 12.1), in the cytoplasmic virion factory of a coinfecting as shall be reviewed here briefy (See also Reteno giant virus inside a phototrophic or heterotrophic et al., 2018). protistal host cell. Virophages are parasites of giant In 1992, following a pneumonia outbreak in viruses and can inhibit their replication, which Bradford, England, an intra-amoebal parasite was may lead to increased survival rates of the infected isolated by the team of T.J. Rowbotham and given host cell population. Te genomes of virophages the name ‘Bradford coccus’. Tis microorganism are 17–33 kilobase pairs (kbp) long and encode was initially assumed to be a bacterium because of 16–34 proteins. Genetic signatures of virophages its size and positive Gram-stain reaction; however, can be found in metagenomic datasets from various atempts to amplify and analyse its 16S riboso- saltwater and freshwater environments around the mal DNA sequences failed. -
Thirty-Thousand-Year-Old Distant Relative of Giant Icosahedral DNA Viruses with a Pandoravirus Morphology
Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology Matthieu Legendrea,1, Julia Bartolia,1, Lyubov Shmakovab, Sandra Jeudya, Karine Labadiec, Annie Adraitd, Magali Lescota, Olivier Poirota, Lionel Bertauxa, Christophe Bruleyd, Yohann Coutéd, Elizaveta Rivkinab, Chantal Abergela,2, and Jean-Michel Claveriea,e,2 aStructural and Genomic Information Laboratory, Unité Mixte de Recherche 7256 (Institut de Microbiologie de la Méditerranée) Centre National de la Recherche Scientifique, Aix–Marseille Université, 13288 Marseille Cedex 9, France; bInstitute of Physicochemical and Biological Problems in Soil Science, Russian Academy of Sciences, Pushchino 142290, Russia; cCommissariat à l’Energie Atomique, Institut de Génomique, Centre National de Séquençage, 91057 Evry Cedex, France; dCommissariat à l’Energie Atomique, Institut de Recherches en Technologies et Sciences pour le Vivant, Biologie à Grande Echelle, Institut National de la Santé et de la Recherche Médicale, Unité 1038, Université Joseph Fourier Grenoble 1, 38054 Grenoble, France; and eAssistance Publique - Hopitaux de Marseille, 13385 Marseille, France Edited by James L. Van Etten, University of Nebraska–Lincoln, Lincoln, NE, and approved January 30, 2014 (received for review November 7, 2013) The largest known DNA viruses infect Acanthamoeba and belong larger amphora-shaped virions 1–1.2 μm in length. Their guanine– to two markedly different families. The Megaviridae exhibit cytosine (GC)-rich (>61%) genomes are up to 2.8 Mb long and pseudo-icosahedral virions up to 0.7 μm in diameter and adenine– encode up to 2,500 proteins sharing no resemblance with those of thymine (AT)-rich genomes of up to 1.25 Mb encoding a thousand Megaviridae (9). -
Characterization of Virus Produced by a Lymphoma Induced by Inoculation of AKR MCF-247 Virus FINN S
JOURNAL OF VIROLOGY, July 1980, p. 211-218 Vol. 35, No. 1 0022-538X/80/07-021 1/08$02.00/0 Characterization of Virus Produced by a Lymphoma Induced by Inoculation of AKR MCF-247 Virus FINN S. PEDERSEN,t DOROTHY L. BUCHHAGEN, C. Y. CHEN,: ESTHER F. HAYS,: AND WILLIAM A. HASELTINE* Sidney Farber Cancer Institute and Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115 We report the characterization of the virus produced by a lymphoid cell line derived from a lymphoma of an AKR mouse after injection of the polytropic AKR virus MCF-247. The virus displays polytropic host range properties and is indistinguishable from MCF-247 as judged by analysis of the large RNase T1- resistant oligonucleotides of the RNA genome. Restriction enzyme analysis of cellular DNA revealed the presence of sequences homologous to MCF-247 ge- nomic RNA. The EcoRI cleavage fragments were characteristic of MCF-247 DNA provirus cleavage products. Mice of the AKR strain developed thymus some of the viruses produced by cell lines de- lymphoma at a high incidence between 6 months rived from spontaneously occurring thymic lym- and 1 year of age (17). The disease is linked to phomas (SL viruses) (6, 11). For MCF-247 virus, the expression of endogenous retroviruses. The the average age of incidence of thymic leukemia retroviruses which can be derived from tissues is decreased from 269 days to about 135 days (6) of AKR mice constitute a polymorphic group of (see below). agents. Viruses that have a host range restricted Although injection of some strains of virus to mouse cells (ecotropic) and are positive in an accelerates the onset of disease in AKR mice, a XC fusion test can be isolated from AKR mice question remains as to whether the injected any time after 2 weeks of age (18).