GNU Coreutils Core GNU Utilities for Version 9.0, 20 September 2021
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At—At, Batch—Execute Commands at a Later Time
at—at, batch—execute commands at a later time at [–csm] [–f script] [–qqueue] time [date] [+ increment] at –l [ job...] at –r job... batch at and batch read commands from standard input to be executed at a later time. at allows you to specify when the commands should be executed, while jobs queued with batch will execute when system load level permits. Executes commands read from stdin or a file at some later time. Unless redirected, the output is mailed to the user. Example A.1 1 at 6:30am Dec 12 < program 2 at noon tomorrow < program 3 at 1945 pm August 9 < program 4 at now + 3 hours < program 5 at 8:30am Jan 4 < program 6 at -r 83883555320.a EXPLANATION 1. At 6:30 in the morning on December 12th, start the job. 2. At noon tomorrow start the job. 3. At 7:45 in the evening on August 9th, start the job. 4. In three hours start the job. 5. At 8:30 in the morning of January 4th, start the job. 6. Removes previously scheduled job 83883555320.a. awk—pattern scanning and processing language awk [ –fprogram–file ] [ –Fc ] [ prog ] [ parameters ] [ filename...] awk scans each input filename for lines that match any of a set of patterns specified in prog. Example A.2 1 awk '{print $1, $2}' file 2 awk '/John/{print $3, $4}' file 3 awk -F: '{print $3}' /etc/passwd 4 date | awk '{print $6}' EXPLANATION 1. Prints the first two fields of file where fields are separated by whitespace. 2. Prints fields 3 and 4 if the pattern John is found. -
Unix Introduction
Unix introduction Mikhail Dozmorov Summer 2018 Mikhail Dozmorov Unix introduction Summer 2018 1 / 37 What is Unix Unix is a family of operating systems and environments that exploits the power of linguistic abstractions to perform tasks Unix is not an acronym; it is a pun on “Multics”. Multics was a large multi-user operating system that was being developed at Bell Labs shortly before Unix was created in the early ’70s. Brian Kernighan is credited with the name. All computational genomics is done in Unix http://www.read.seas.harvard.edu/~kohler/class/aosref/ritchie84evolution.pdfMikhail Dozmorov Unix introduction Summer 2018 2 / 37 History of Unix Initial file system, command interpreter (shell), and process management started by Ken Thompson File system and further development from Dennis Ritchie, as well as Doug McIlroy and Joe Ossanna Vast array of simple, dependable tools that each do one simple task Ken Thompson (sitting) and Dennis Ritchie working together at a PDP-11 Mikhail Dozmorov Unix introduction Summer 2018 3 / 37 Philosophy of Unix Vast array of simple, dependable tools Each do one simple task, and do it really well By combining these tools, one can conduct rather sophisticated analyses The Linux help philosophy: “RTFM” (Read the Fine Manual) Mikhail Dozmorov Unix introduction Summer 2018 4 / 37 Know your Unix Unix users spend a lot of time at the command line In Unix, a word is worth a thousand mouse clicks Mikhail Dozmorov Unix introduction Summer 2018 5 / 37 Unix systems Three common types of laptop/desktop operating systems: Windows, Mac, Linux. Mac and Linux are both Unix-like! What that means for us: Unix-like operating systems are equipped with “shells”" that provide a command line user interface. -
A Postgresql Development Environment
A PostgreSQL development environment Peter Eisentraut [email protected] @petereisentraut The plan tooling building testing developing documenting maintaining Tooling: Git commands Useful commands: git add (-N, -p) git ls-files git am git format-patch git apply git grep (-i, -w, -W) git bisect git log (-S, --grep) git blame -w git merge git branch (--contains, -d, -D, --list, git pull -m, -r) git push (-n, -f, -u) git checkout (file, branch, -b) git rebase git cherry-pick git reset (--hard) git clean (-f, -d, -x, -n) git show git commit (--amend, --reset, -- git status fixup, -a) git stash git diff git tag Tooling: Git configuration [diff] colorMoved = true colorMovedWS = allow-indentation-change [log] date = local [merge] conflictStyle = diff3 [rebase] autosquash = true [stash] showPatch = true [tag] sort = version:refname [versionsort] suffix = "_BETA" suffix = "_RC" Tooling: Git aliases [alias] check-whitespace = \ !git diff-tree --check $(git hash-object -t tree /dev/null) HEAD ${1:-$GIT_PREFIX} find = !git ls-files "*/$1" gtags = !git ls-files | gtags -f - st = status tags = tag -l wdiff = diff --color-words=[[:alnum:]]+ wshow = show --color-words Tooling: Git shell integration zsh vcs_info Tooling: Editor Custom settings for PostgreSQL sources exist. Advanced options: whitespace checking automatic spell checking (flyspell) automatic building (flycheck, flymake) symbol lookup ("tags") Tooling: Shell settings https://superuser.com/questions/521657/zsh-automatically-set-environment-variables-for-a-directory zstyle ':chpwd:profiles:/*/*/devel/postgresql(|/|/*)' profile postgresql chpwd_profile_postgresql() { chpwd_profile_default export EMAIL="[email protected]" alias nano='nano -T4' LESS="$LESS -x4" } Tooling — Summary Your four friends: vcs editor shell terminal Building: How to run configure ./configure -C/--config-cache --prefix=$(cd . -
RACF Tips Volume 3, Issue 1, January 2009
Volume 3 Issue 1 IPS RSH RACF T January For Administrators, Auditors, and Analysts 2009 Specifying a Replacement ID used to change a file's attributes for Program Control, APF Authorized, and Shared Library. with IRRRID00 . To generate commands to delete an ID and all references to it, use RACF's IRRRID00 utility. You simply enter the ID in the SYSIN DD Temporary Access with statement of the IRRRID00 job like so: CONNECT REVOKE(date) //SYSIN DD * USERX You may occasionally need to permit a user temporary access to a resource. One way to do If USERX is the owner of a profile or connect, so is to grant a group access to the resource IRRRID00 generates commands like: and connect the user to that group with a revoke date. The command to set the connect revoke CONNECT RDSADM GROUP(RACFSTC) OWNER(?USERX) date would look something like this: In these cases, you need to change ?USERX to CONNECT USERA GROUP(TEMPACC) REVOKE(1/20/09) a valid replacement ID. This can be done manually or with ISPF EDIT CHANGE. On the date specified with the revoke, RACF will no longer allow the user to have the access Alternatively, you can tell IRRRID00 which permitted to the group. If you want to remove the replacement ID to use when it builds the revoke date but leave the connect intact, enter: commands. If, for instance, you want to replace every occurrence of USERX with USERJ, enter CONNECT USERA GROUP(TEMPACC) NOREVOKE the following in the SYSIN DD: A banking client of ours used this capability to //SYSIN DD * govern access to APF-authorized libraries. -
LS-09EN. OS Permissions. SUID/SGID/Sticky. Extended Attributes
Operating Systems LS-09. OS Permissions. SUID/SGID/Sticky. Extended Attributes. Operating System Concepts 1.1 ys©2019 Linux/UNIX Security Basics Agenda ! UID ! GID ! Superuser ! File Permissions ! Umask ! RUID/EUID, RGID/EGID ! SUID, SGID, Sticky bits ! File Extended Attributes ! Mount/umount ! Windows Permissions ! File Systems Restriction Operating System Concepts 1.2 ys©2019 Domain Implementation in Linux/UNIX ! Two types domain (subjects) groups ! User Domains = User ID (UID>0) or User Group ID (GID>0) ! Superuser Domains = Root ID (UID=0) or Root Group ID (root can do everything, GID=0) ! Domain switch accomplished via file system. ! Each file has associated with it a domain bit (SetUID bit = SUID bit). ! When file is executed and SUID=on, then Effective UID is set to Owner of the file being executed. When execution completes Efective UID is reset to Real UID. ! Each subject (process) and object (file, socket,etc) has a 16-bit UID. ! Each object also has a 16-bit GID and each subject has one or more GIDs. ! Objects have access control lists that specify read, write, and execute permissions for user, group, and world. Operating System Concepts 1.3 ys©2019 Subjects and Objects Subjects = processes Objects = files (regular, directory, (Effective UID, EGID) devices /dev, ram /proc) RUID (EUID) Owner permissions (UID) RGID-main (EGID) Group Owner permissions (GID) +RGID-list Others RUID, RGID Others ID permissions Operating System Concepts 1.4 ys©2019 The Superuser (root) • Almost every Unix system comes with a special user in the /etc/passwd file with a UID=0. This user is known as the superuser and is normally given the username root. -
Source Code Trees in the VALLEY of THE
PROGRAMMING GNOME Source code trees IN THE VALLEY OF THE CODETHORSTEN FISCHER So you’ve just like the one in Listing 1. Not too complex, eh? written yet another Unfortunately, creating a Makefile isn’t always the terrific GNOME best solution, as assumptions on programs program. Great! But locations, path names and others things may not be does it, like so many true in all cases, forcing the user to edit the file in other great programs, order to get it to work properly. lack something in terms of ease of installation? Even the Listing 1: A simple Makefile for a GNOME 1: CC=/usr/bin/gcc best and easiest to use programs 2: CFLAGS=`gnome-config —cflags gnome gnomeui` will cause headaches if you have to 3: LDFLAGS=`gnome-config —libs gnome gnomeui` type in lines like this, 4: OBJ=example.o one.o two.o 5: BINARIES=example With the help of gcc -c sourcee.c gnome-config —libs —cflags 6: gnome gnomeui gnomecanvaspixbuf -o sourcee.o 7: all: $(BINARIES) Automake and Autoconf, 8: you can create easily perhaps repeated for each of the files, and maybe 9: example: $(OBJ) with additional compiler flags too, only to then 10: $(CC) $(LDFLAGS) -o $@ $(OBJ) installed source code demand that everything is linked. And at the end, 11: do you then also have to copy the finished binary 12: .c.o: text trees. Read on to 13: $(CC) $(CFLAGS) -c $< manually into the destination directory? Instead, 14: find out how. wouldn’t you rather have an easy, portable and 15: clean: quick installation process? Well, you can – if you 16: rm -rf $(OBJ) $(BINARIES) know how. -
UNIX Cheat Sheet – Sarah Medland Help on Any Unix Command List a Directory Change to Directory Make a New Directory Remove A
THE 2013 INTERNATIONAL WORKSHOP ON STATISTICAL METHODOLOGY FOR HUMAN GENOMIC STUDIES UNIX cheat sheet – Sarah Medland Help on any Unix command man {command} Type man ls to read the manual for the ls command. which {command} Find out where a program is installed whatis {command} Give short description of command. List a directory ls {path} ls -l {path} Long listing, with date, size and permisions. ls -R {path} Recursive listing, with all subdirs. Change to directory cd {dirname} There must be a space between. cd ~ Go back to home directory, useful if you're lost. cd .. Go back one directory. Make a new directory mkdir {dirname} Remove a directory/file rmdir {dirname} Only works if {dirname} is empty. rm {filespec} ? and * wildcards work like DOS should. "?" is any character; "*" is any string of characters. Print working directory pwd Show where you are as full path. Copy a file or directory cp {file1} {file2} cp -r {dir1} {dir2} Recursive, copy directory and all subdirs. cat {newfile} >> {oldfile} Append newfile to end of oldfile. Move (or rename) a file mv {oldfile} {newfile} Moving a file and renaming it are the same thing. View a text file more {filename} View file one screen at a time. less {filename} Like more , with extra features. cat {filename} View file, but it scrolls. page {filename} Very handy with ncftp . nano {filename} Use text editor. head {filename} show first 10 lines tail {filename} show last 10 lines Compare two files diff {file1} {file2} Show the differences. sdiff {file1} {file2} Show files side by side. Other text commands grep '{pattern}' {file} Find regular expression in file. -
Introduction to Linux – Part 1
Introduction to Linux – Part 1 Brett Milash and Wim Cardoen Center for High Performance Computing May 22, 2018 ssh Login or Interactive Node kingspeak.chpc.utah.edu Batch queue system … kp001 kp002 …. kpxxx FastX ● https://www.chpc.utah.edu/documentation/software/fastx2.php ● Remote graphical sessions in much more efficient and effective way than simple X forwarding ● Persistence - can be disconnected from without closing the session, allowing users to resume their sessions from other devices. ● Licensed by CHPC ● Desktop clients exist for windows, mac, and linux ● Web based client option ● Server installed on all CHPC interactive nodes and the frisco nodes. Windows – alternatives to FastX ● Need ssh client - PuTTY ● http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html - XShell ● http://www.netsarang.com/download/down_xsh.html ● For X applications also need X-forwarding tool - Xming (use Mesa version as needed for some apps) ● http://www.straightrunning.com/XmingNotes/ - Make sure X forwarding enabled in your ssh client Linux or Mac Desktop ● Just need to open up a terminal or console ● When running applications with graphical interfaces, use ssh –Y or ssh –X Getting Started - Login ● Download and install FastX if you like (required on windows unless you already have PuTTY or Xshell installed) ● If you have a CHPC account: - ssh [email protected] ● If not get a username and password: - ssh [email protected] Shell Basics q A Shell is a program that is the interface between you and the operating system -
Lecture 7 Network Management and Debugging
SYSTEM ADMINISTRATION MTAT.08.021 LECTURE 7 NETWORK MANAGEMENT AND DEBUGGING Prepared By: Amnir Hadachi and Artjom Lind University of Tartu, Institute of Computer Science [email protected] / [email protected] 1 LECTURE 7: NETWORK MGT AND DEBUGGING OUTLINE 1.Intro 2.Network Troubleshooting 3.Ping 4.SmokePing 5.Trace route 6.Network statistics 7.Inspection of live interface activity 8.Packet sniffers 9.Network management protocols 10.Network mapper 2 1. INTRO 3 LECTURE 7: NETWORK MGT AND DEBUGGING INTRO QUOTE: Networks has tendency to increase the number of interdependencies among machine; therefore, they tend to magnify problems. • Network management tasks: ✴ Fault detection for networks, gateways, and critical servers ✴ Schemes for notifying an administrator of problems ✴ General network monitoring, to balance load and plan expansion ✴ Documentation and visualization of the network ✴ Administration of network devices from a central site 4 LECTURE 7: NETWORK MGT AND DEBUGGING INTRO Network Size 160 120 80 40 Management Procedures 0 AUTOMATION ILLUSTRATION OF NETWORK GROWTH VS MGT PROCEDURES AUTOMATION 5 LECTURE 7: NETWORK MGT AND DEBUGGING INTRO • Network: • Subnets + Routers / switches Time to consider • Automating mgt tasks: • shell scripting source: http://www.eventhelix.com/RealtimeMantra/Networking/ip_routing.htm#.VvjkA2MQhIY • network mgt station 6 2. NETWORK TROUBLES HOOTING 7 LECTURE 7: NETWORK MGT AND DEBUGGING NETWORK TROUBLESHOOTING • Many tools are available for debugging • Debugging: • Low-level (e.g. TCP/IP layer) • high-level (e.g. DNS, NFS, and HTTP) • This section progress: ping trace route GENERAL ESSENTIAL TROUBLESHOOTING netstat TOOLS STRATEGY nmap tcpdump … 8 LECTURE 7: NETWORK MGT AND DEBUGGING NETWORK TROUBLESHOOTING • Before action, principle to consider: ✴ Make one change at a time ✴ Document the situation as it was before you got involved. -
Specification for JSON Abstract Data Notation Version
Standards Track Work Product Specification for JSON Abstract Data Notation (JADN) Version 1.0 Committee Specification 01 17 August 2021 This stage: https://docs.oasis-open.org/openc2/jadn/v1.0/cs01/jadn-v1.0-cs01.md (Authoritative) https://docs.oasis-open.org/openc2/jadn/v1.0/cs01/jadn-v1.0-cs01.html https://docs.oasis-open.org/openc2/jadn/v1.0/cs01/jadn-v1.0-cs01.pdf Previous stage: https://docs.oasis-open.org/openc2/jadn/v1.0/csd02/jadn-v1.0-csd02.md (Authoritative) https://docs.oasis-open.org/openc2/jadn/v1.0/csd02/jadn-v1.0-csd02.html https://docs.oasis-open.org/openc2/jadn/v1.0/csd02/jadn-v1.0-csd02.pdf Latest stage: https://docs.oasis-open.org/openc2/jadn/v1.0/jadn-v1.0.md (Authoritative) https://docs.oasis-open.org/openc2/jadn/v1.0/jadn-v1.0.html https://docs.oasis-open.org/openc2/jadn/v1.0/jadn-v1.0.pdf Technical Committee: OASIS Open Command and Control (OpenC2) TC Chair: Duncan Sparrell ([email protected]), sFractal Consulting LLC Editor: David Kemp ([email protected]), National Security Agency Additional artifacts: This prose specification is one component of a Work Product that also includes: JSON schema for JADN documents: https://docs.oasis-open.org/openc2/jadn/v1.0/cs01/schemas/jadn-v1.0.json JADN schema for JADN documents: https://docs.oasis-open.org/openc2/jadn/v1.0/cs01/schemas/jadn-v1.0.jadn Abstract: JSON Abstract Data Notation (JADN) is a UML-based information modeling language that defines data structure independently of data format. -
Unix Command Line; Editors
Unix command line; editors Karl Broman Biostatistics & Medical Informatics, UW–Madison kbroman.org github.com/kbroman @kwbroman Course web: kbroman.org/AdvData My goal in this lecture is to convince you that (a) command-line-based tools are the things to focus on, (b) you need to choose a powerful, universal text editor (you’ll use it a lot), (c) you want to be comfortable and skilled with each. For your work to be reproducible, it needs to be code-based; don’t touch that mouse! Windows vs. Mac OSX vs. Linux Remote vs. Not 2 The Windows operating system is not very programmer-friendly. Mac OSX isn’t either, but under the hood, it’s just unix. Don’t touch the mouse! Open a terminal window and start typing. I do most of my work directly on my desktop or laptop. You might prefer to work remotely on a server, instead. But I can’t stand having any lag in looking at graphics. If you use Windows... Consider Git Bash (or Cygwin) or turn on the Windows subsystem for linux 3 Cygwin is an effort to get Unix command-line tools in Windows. Git Bash combines git (for version control) and bash (the unix shell); it’s simpler to deal with than Cygwin. Linux is now accessible in Windows 10, but you have to enable it. If you use a Mac... Consider Homebrew and iTerm2 Also the XCode command line tools 4 Homebrew is a packaging system; iTerm2 is a Terminal replacement. The XCode command line tools are a must for most unixy things on a Mac. -
Beginning Portable Shell Scripting from Novice to Professional
Beginning Portable Shell Scripting From Novice to Professional Peter Seebach 10436fmfinal 1 10/23/08 10:40:24 PM Beginning Portable Shell Scripting: From Novice to Professional Copyright © 2008 by Peter Seebach All rights reserved. No part of this work may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage or retrieval system, without the prior written permission of the copyright owner and the publisher. ISBN-13 (pbk): 978-1-4302-1043-6 ISBN-10 (pbk): 1-4302-1043-5 ISBN-13 (electronic): 978-1-4302-1044-3 ISBN-10 (electronic): 1-4302-1044-3 Printed and bound in the United States of America 9 8 7 6 5 4 3 2 1 Trademarked names may appear in this book. Rather than use a trademark symbol with every occurrence of a trademarked name, we use the names only in an editorial fashion and to the benefit of the trademark owner, with no intention of infringement of the trademark. Lead Editor: Frank Pohlmann Technical Reviewer: Gary V. Vaughan Editorial Board: Clay Andres, Steve Anglin, Ewan Buckingham, Tony Campbell, Gary Cornell, Jonathan Gennick, Michelle Lowman, Matthew Moodie, Jeffrey Pepper, Frank Pohlmann, Ben Renow-Clarke, Dominic Shakeshaft, Matt Wade, Tom Welsh Project Manager: Richard Dal Porto Copy Editor: Kim Benbow Associate Production Director: Kari Brooks-Copony Production Editor: Katie Stence Compositor: Linda Weidemann, Wolf Creek Press Proofreader: Dan Shaw Indexer: Broccoli Information Management Cover Designer: Kurt Krames Manufacturing Director: Tom Debolski Distributed to the book trade worldwide by Springer-Verlag New York, Inc., 233 Spring Street, 6th Floor, New York, NY 10013.