Origin of Life Ashwini Kumar Lal Ministry of Statistics & Programme Implementation Government of India, New Delhi Abstract
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Molecular Cooperation: a Self-Less Origin of Life N
XVIIIth Intl Conf on Origin of Life 2017 (LPI Contrib. No. 1967) 4122.pdf July 16-21, 2017 at UC San Diego, CA, USA Molecular Cooperation: A Self-less Origin of Life N. Lehman1 1Department of Chemistry, Portland State University * [email protected] Introduction: Molecular cooperation is the obligate dependence of multiple information- bearing molecules on the propagation of the system as a whole. In an RNA world, multiple types of such cooperation would have been possible [1], including simple reaction pathways with more than one informational reactant, polymer strands that interact to form a catalytic whole, cross- catalysis and cyclical-catalysis, a formal autocatalytic set, and perhaps even a hypercycle. I will discuss these various types of molecular cooperation and explore how they differ from “simple” chemistry that may have many reactants but no cooperative component. Reproduction, replication, and recombination: Living systems are characterized by the propagation and proliferation of informational units as a function of time. Szathmáry [2] intro- duced a distinction between replicators and reproducers. Here, I will expand on this difference, tie them into prebiotic chemistry, and emphazise that cooperation must have played a key role in the origins of life, rather than being a later evolutionary invention. Reproduction is the ability of one molecule to catalyze the production of other, similar molecules. Replication is a sub-set of reproduction whereby a template is used to augment the creation of a second molecule from the first, one monomer at a time. Recombination is the swapping of large blocks of genetic infor- mation, rather than a series of unit-by-unit replication events. -
Building Blocks That Fall from the Sky
Building blocks that fall from the sky How did life on Earth begin? Scientists from the “Heidelberg Initiative for the Origin of Life” have set about answering this truly existential question. Indeed, they are going one step further and examining the conditions under which life can emerge. The initiative was founded by Thomas Henning, Director at the Max Planck Institute for Astronomy in Heidelberg, and brings together researchers from chemistry, physics and the geological and biological sciences. 18 MaxPlanckResearch 3 | 18 FOCUS_The Origin of Life TEXT THOMAS BUEHRKE he great questions of our exis- However, recent developments are The initiative was triggered by the dis- tence are the ones that fasci- forcing researchers to break down this covery of an ever greater number of nate us the most: how did the specialization and combine different rocky planets orbiting around stars oth- universe evolve, and how did disciplines. “That’s what we’re trying er than the Sun. “We now know that Earth form and life begin? to do with the Heidelberg Initiative terrestrial planets of this kind are more DoesT life exist anywhere else, or are we for the Origins of Life, which was commonplace than the Jupiter-like gas alone in the vastness of space? By ap- founded three years ago,” says Thom- giants we identified initially,” says Hen- proaching these puzzles from various as Henning. HIFOL, as the initiative’s ning. Accordingly, our Milky Way alone angles, scientists can answer different as- name is abbreviated, not only incor- is home to billions of rocky planets, pects of this question. -
Prebiological Evolution and the Metabolic Origins of Life
Prebiological Evolution and the Andrew J. Pratt* Metabolic Origins of Life University of Canterbury Keywords Abiogenesis, origin of life, metabolism, hydrothermal, iron Abstract The chemoton model of cells posits three subsystems: metabolism, compartmentalization, and information. A specific model for the prebiological evolution of a reproducing system with rudimentary versions of these three interdependent subsystems is presented. This is based on the initial emergence and reproduction of autocatalytic networks in hydrothermal microcompartments containing iron sulfide. The driving force for life was catalysis of the dissipation of the intrinsic redox gradient of the planet. The codependence of life on iron and phosphate provides chemical constraints on the ordering of prebiological evolution. The initial protometabolism was based on positive feedback loops associated with in situ carbon fixation in which the initial protometabolites modified the catalytic capacity and mobility of metal-based catalysts, especially iron-sulfur centers. A number of selection mechanisms, including catalytic efficiency and specificity, hydrolytic stability, and selective solubilization, are proposed as key determinants for autocatalytic reproduction exploited in protometabolic evolution. This evolutionary process led from autocatalytic networks within preexisting compartments to discrete, reproducing, mobile vesicular protocells with the capacity to use soluble sugar phosphates and hence the opportunity to develop nucleic acids. Fidelity of information transfer in the reproduction of these increasingly complex autocatalytic networks is a key selection pressure in prebiological evolution that eventually leads to the selection of nucleic acids as a digital information subsystem and hence the emergence of fully functional chemotons capable of Darwinian evolution. 1 Introduction: Chemoton Subsystems and Evolutionary Pathways Living cells are autocatalytic entities that harness redox energy via the selective catalysis of biochemical transformations. -
Comment on “Tibor Gánti and Robert Rosen” by Athel Cornish-Bowden
Comment on \Tibor G´anti and Robert Rosen" by Athel Cornish-Bowden Wim Hordijk SmartAnalaytiX.com, Lausanne, Switzerland Mike Steel Biomathematics Research Centre, University of Canterbury, Christchurch, New Zealand 1. Introduction In a recent article published in this journal [1], a comparison is made between Tibor G´anti's chemoton model and Robert Rosen's (M; R) systems. This com- parison is very insightful indeed. As the author remarks, these models seem to be two contrasting approaches, but upon closer inspection have more in common than one would initially think. At the end of the article, the author also briefly mentions related models, such as autopoietic systems and autocatalytic sets. In particular, autocatalytic sets are presented as follows [1]: \Autocatalytic sets (Kauffman, 1986) are the most different, because all of the others incorporate, at least implicitly, the idea that a min- imal self-organizing system must be small, i.e. that it must have a minimum of components. Kauffman, in contrast, made no such condition, but instead imagined self-organization as a property that might arise spontaneously in a system with enough weakly interact- ing components. As he assumed (reasonably) that the probability that any given component might catalyse a particular condensation reaction would be very small, this inevitably leads to the conclusion that the total number of components must be very large (at least Preprint submitted to Journal of Theoretical Biology October 10, 2015 millions) in order to have certainty that every reaction will have a catalyst." However, work on autocatalytic networks over the past 15 years has clearly established a contrary conclusion: autocatalytic sets of small size are not only predicted, but observed in simulations and the laboratory. -
The Place of RNA in the Origin and Early Evolution of the Genetic Machinery
ISSN 2075-1729 www.mdpi.com/journal/life Peer-Review Record: The Place of RNA in the Origin and Early Evolution of the Genetic Machinery Günter Wächtershäuser Life 2014, 4, 1050-1091, doi:10.3390/4041050 Reviewer 1: Anonymous Reviewer 2: Wolfgang Buckel Editor: Niles Lehman (Guest editor of Special Issue “The Origins and Early Evolution of RNA”) Received: 24 October 2014 First Revision Received: 2 December 2014 Accepted: 9 December 2014 Published: 19 December 2014 First Round of Evaluation Round 1: Reviewer 1 Report and Author Response In this massive and dense manuscript, Günter Wächtershäuser furthers his views and opinions on the origin and evolution of life. He reviews some of his previous work and presents an alternative to the dominant ‘Ancient RNA world’ hypothesis. The alternative views he previously generated are much expanded in this manuscript. In light of recent research developments and argumentation (some of it reviewed), his views should be considered a welcome addition to the many ideas that populate the “origin of life” field of inquiry that counter the dominant paradigm. I have however a number of quibbles that if addressed could increase the accuracy, value and impact of the manuscript. I must note that a careful evaluation of all facets requires expertise in a multitude of disciplines (from prebiotic chemistry and structural biology to evolutionary bioinformatics and biochemistry) and considerable time, none of which I possess. Therefore, my comments will be slanted by my own expertise and will only serve the author as a partial devil’s advocate effort General commentary Section 1. The place of RNA in LUCA (page 2): In search of features that are more conserved (carrying deep phylogenetic memory) than the sequence of genes, Wächtershäuser focuses on a paper of his in Systematic and Applied Microbiology (1998) that uses gene content and order of microbial genomes to make inferences about the last universal common ancestor (LUCA) of cellular life. -
Electrons, Life and the Evolution of Earth's Chemical Cycles
Electrons, Life and the Evolution of Earth’s Chemical Cycles OCN 623 – Chemical Oceanography 23 April 2013 Adaption of Brian Glazer lecture (based on Falkowski and Godfrey (2008) Phil. Trans. R. Soc. B, 363: 2705-2716) © 2013 F.J. Sansone Outline Earth’s geological, geochemical and biological co- evolution since formation - Early Earth - Origins of life - The great oxidation event - Linkage between global O and N cycles - Alternate explanations for the great oxidation event - The rise of oxygen and the evolution of life - The Phanerozoic How Does the Earth Work as a Biosphere? All organisms derive energy for growth and maintenance by moving electrons from a substrate to a product All substrates and products must ultimately be recycled All metabolic processes on Earth are prokaryotic and were developed in the Archean and/or Proterozoic Eons Earth’s Geological, Geochemical and Biological Co-evolution Since Formation Earth, ~3.5 Ga Ago • Earth cools to <100˚C • Shallow sea environment – Land covered by low egg- shaped hills and pillow lavas – Silt layers – Scattered volcanic islands and evaporite lagoons • Tides higher – Moon closer to Earth, days shorter • Atmosphere –CO2-rich, no O2 – UV-drenched landscape Faint Sun Paradox High atmospheric CO2 and CH4 important in early Earth -- balanced weak Sun to maintain temp Recycling of Atmospheric CO2 Liquid water on early Earth allowed a hydrologic cycle, carbonate and silicate mineral weathering to develop: 2+ - CaCO3 + CO2 + H2O = Ca + 2HCO3 2+ - CaSiO3 +2CO2 +3H2O = Ca + 2HCO3 + H4SIO4 Uptake -
The Difficult Case of an RNA-Only Origin of Life
Emerging Topics in Life Sciences (2019) 3 469–475 https://doi.org/10.1042/ETLS20190024 Perspective The difficult case of an RNA-only origin of life Kristian Le Vay and Hannes Mutschler Max-Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany Downloaded from https://portlandpress.com/emergtoplifesci/article-pdf/3/5/469/859756/etls-2019-0024c.pdf by Max-Planck-Institut fur Biochemie user on 28 November 2019 Correspondence: Hannes Mutschler ([email protected]) The RNA world hypothesis is probably the most extensively studied model for the emergence of life on Earth. Despite a large body of evidence supporting the idea that RNA is capable of kick-starting autocatalytic self-replication and thus initiating the emergence of life, seemingly insurmountable weaknesses in the theory have also been highlighted. These problems could be overcome by novel experimental approaches, including out-of- equilibrium environments, and the exploration of an early co-evolution of RNA and other key biomolecules such as peptides and DNA, which might be necessary to mitigate the shortcomings of RNA-only systems. The conjecture that life on Earth evolved from an ‘RNA World’ remains one of the most popular hypotheses for abiogenesis, even 60 years after Alex Rich first put the idea forward [1]. For some, evi- dence based upon ubiquitous molecular fossils and the elegance of the idea that RNA once had a dual role as information carrier and prebiotic catalyst provide overwhelming support for the theory. Nevertheless, doubts remain surrounding the chemical evolution of an RNA world, whose classical scenario is based on a temporal sequence of nucleotide formation, enzyme-free polymerisation/replica- tion, recombination, encapsulation in lipid vesicles (or other compartments), evolution of ribozymes and finally the innovation of the genetic code and its translation (Figure 1)[2,3]. -
Astrobiology and the Search for Life Beyond Earth in the Next Decade
Astrobiology and the Search for Life Beyond Earth in the Next Decade Statement of Dr. Andrew Siemion Berkeley SETI Research Center, University of California, Berkeley ASTRON − Netherlands Institute for Radio Astronomy, Dwingeloo, Netherlands Radboud University, Nijmegen, Netherlands to the Committee on Science, Space and Technology United States House of Representatives 114th United States Congress September 29, 2015 Chairman Smith, Ranking Member Johnson and Members of the Committee, thank you for the opportunity to testify today. Overview Nearly 14 billion years ago, our universe was born from a swirling quantum soup, in a spectacular and dynamic event known as the \big bang." After several hundred million years, the first stars lit up the cosmos, and many hundreds of millions of years later, the remnants of countless stellar explosions coalesced into the first planetary systems. Somehow, through a process still not understood, the laws of physics guiding the unfolding of our universe gave rise to self-replicating organisms − life. Yet more perplexing, this life eventually evolved a capacity to know its universe, to study it, and to question its own existence. Did this happen many times? If it did, how? If it didn't, why? SETI (Search for ExtraTerrestrial Intelligence) experiments seek to determine the dis- tribution of advanced life in the universe through detecting the presence of technology, usually by searching for electromagnetic emission from communication technology, but also by searching for evidence of large scale energy usage or interstellar propulsion. Technology is thus used as a proxy for intelligence − if an advanced technology exists, so to does the ad- vanced life that created it. -
Is Extraterrestrial Organic Matter Relevant to the Origin of Life on Earth?
IS EXTRATERRESTRIAL ORGANIC MATTER RELEVANT TO THE ORIGIN OF LIFE ON EARTH? D. C. B. WHITTET Department of Physics, Applied Physics and Astronomy, Rensselaer Polytechnic Institute, Troy, NY 12180, U.S.A. (Received 19 August 1996) Abstract. I review the relative importance of internal and external sources of prebiotic molecules on Earth at the time of life's origin 3.7 Gyr ago. The ef®ciency of synthesis in the Earth's atmosphere was critically dependent on its oxidation state. If the early atmosphere was non-reducing and CO2- dominated, external delivery might have been the dominant source. Interplanetary dust grains and micrometeorites currently deliver carbonaceous matter to the Earth's surface at a rate of 3 5 7 10 kg/yr (equivalent to a biomass in 2 Gyr), but this may have been as high as 5 10 kg/yr (a biomass in only 10 Myr) during the epoch of late bombardment. Much of the incoming material is in the form of chemically inactive kerogens and amorphous carbon; but if the Earth once had a dense (10-bar) atmosphere, small comets rich in a variety of prebiotic molecules may have been suf®ciently air-braked to land non-destructively. Lingering uncertainties regarding the impact history of the Earth and the density and composition of its early atmosphere limit our ability to draw ®rm conclusions. 1. Introduction In at least one sense, a connection between the Universe at large and life in our small corner of it is inevitable. The hydrogen, carbon, nitrogen, oxygen, and other elements that make up our bodies and other living things were created billions of years ago in the interiors of stars and, in the case of hydrogen, in the the Big Bang itself (see Trimble, 1997, in this volume for an eloquent review). -
Topological and Thermodynamic Factors That Influence the Evolution of Small Networks of Catalytic RNA Species
Downloaded from rnajournal.cshlp.org on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press Topological and thermodynamic factors that influence the evolution of small networks of catalytic RNA species JESSICA A.M. YEATES,1 PHILIPPE NGHE,2 and NILES LEHMAN1 1Department of Chemistry, Portland State University, Portland, Oregon 97207, USA 2Laboratoire de Biochimie, École Supérieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris), PSL Research University, CNRS UMR 8231, 75231 Paris, France ABSTRACT An RNA-directed recombination reaction can result in a network of interacting RNA species. It is now becoming increasingly apparent that such networks could have been an important feature of the RNA world during the nascent evolution of life on the Earth. However, the means by which such small RNA networks assimilate other available genotypes in the environment to grow and evolve into the more complex networks that are thought to have existed in the prebiotic milieu are not known. Here, we used the ability of fragments of the Azoarcus group I intron ribozyme to covalently self-assemble via genotype-selfish and genotype-cooperative interactions into full-length ribozymes to investigate the dynamics of small (three- and four-membered) networks. We focused on the influence of a three-membered core network on the incorporation of additional nodes, and on the degree and direction of connectivity as single new nodes are added to this core. We confirmed experimentally the predictions that additional links to a core should enhance overall network growth rates, but that the directionality of the link (a “giver” or a “receiver”) impacts the growth of the core itself. -
CASKAR: a CASPER Concept for the SKA Phase 1 Signal Processing Sub-System
CASKAR: A CASPER concept for the SKA phase 1 Signal Processing Sub-system Francois Kapp, SKA SA Outline • Background • Technical – Architecture – Power • Cost • Schedule • Challenges/Risks • Conclusions Background CASPER Technology MeerKAT Who is CASPER? • Berkeley Wireless Research Center • Nancay Observatory • UC Berkeley Radio Astronomy Lab • Oxford University Astrophysics • UC Berkeley Space Sciences Lab • Metsähovi Radio Observatory, Helsinki University of • Karoo Array Telescope / SKA - SA Technology • NRAO - Green Bank • New Jersey Institute of Technology • NRAO - Socorro • West Virginia University Department of Physics • Allen Telescope Array • University of Iowa Department of Astronomy and • MIT Haystack Observatory Physics • Harvard-Smithsonian Center for Astrophysics • Ohio State University Electroscience Lab • Caltech • Hong Kong University Department of Electrical and Electronic Engineering • Cornell University • Hartebeesthoek Radio Astronomy Observatory • NAIC - Arecibo Observatory • INAF - Istituto di Radioastronomia, Northern Cross • UC Berkeley - Leuschner Observatory Radiotelescope • Giant Metrewave Radio Telescope • University of Manchester, Jodrell Bank Centre for • Institute of Astronomy and Astrophysics, Academia Sinica Astrophysics • National Astronomical Observatories, Chinese Academy of • Submillimeter Array Sciences • NRAO - Tucson / University of Arizona Department of • CSIRO - Australia Telescope National Facility Astronomy • Parkes Observatory • Center for Astrophysics and Supercomputing, Swinburne University -
Westminsterresearch the Astrobiology Primer V2.0 Domagal-Goldman, S.D., Wright, K.E., Adamala, K., De La Rubia Leigh, A., Bond
WestminsterResearch http://www.westminster.ac.uk/westminsterresearch The Astrobiology Primer v2.0 Domagal-Goldman, S.D., Wright, K.E., Adamala, K., de la Rubia Leigh, A., Bond, J., Dartnell, L., Goldman, A.D., Lynch, K., Naud, M.-E., Paulino-Lima, I.G., Kelsi, S., Walter-Antonio, M., Abrevaya, X.C., Anderson, R., Arney, G., Atri, D., Azúa-Bustos, A., Bowman, J.S., Brazelton, W.J., Brennecka, G.A., Carns, R., Chopra, A., Colangelo-Lillis, J., Crockett, C.J., DeMarines, J., Frank, E.A., Frantz, C., de la Fuente, E., Galante, D., Glass, J., Gleeson, D., Glein, C.R., Goldblatt, C., Horak, R., Horodyskyj, L., Kaçar, B., Kereszturi, A., Knowles, E., Mayeur, P., McGlynn, S., Miguel, Y., Montgomery, M., Neish, C., Noack, L., Rugheimer, S., Stüeken, E.E., Tamez-Hidalgo, P., Walker, S.I. and Wong, T. This is a copy of the final version of an article published in Astrobiology. August 2016, 16(8): 561-653. doi:10.1089/ast.2015.1460. It is available from the publisher at: https://doi.org/10.1089/ast.2015.1460 © Shawn D. Domagal-Goldman and Katherine E. Wright, et al., 2016; Published by Mary Ann Liebert, Inc. This Open Access article is distributed under the terms of the Creative Commons Attribution Noncommercial License (http://creativecommons.org/licenses/by- nc/4.0/) which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited. The WestminsterResearch online digital archive at the University of Westminster aims to make the research output of the University available to a wider audience.