WALKERANA VOLUME 15 NUMBER 1 MARCH 2012 Pages 1-10 Epioblasma Capsaeformis (Bivalvia, Unionidae.) How a State-Wide Stream Survey Can Aid in Jess W
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Gene Family Amplification Facilitates Adaptation in Freshwater Unionid
Gene family amplification facilitates adaptation in freshwater unionid bivalve Megalonaias nervosa Rebekah L. Rogers1∗, Stephanie L. Grizzard1;2, James E. Titus-McQuillan1, Katherine Bockrath3;4 Sagar Patel1;5;6, John P. Wares3;7, Jeffrey T Garner8, Cathy C. Moore1 Author Affiliations: 1. Department of Bioinformatics and Genomics, University of North Carolina, Charlotte, NC 2. Department of Biological Sciences, Old Dominion University, Norfolk, VA 3. Department of Genetics, University of Georgia, Athens, GA 4. U.S. Fish and Wildlife Service, Midwest Fisheries Center Whitney Genetics Lab, Onalaska, WI 5. Department of Biology, Saint Louis University, St. Louis, MO 6. Donald Danforth Plant Science Center, St. Louis, MO 7. Odum School of Ecology, University of Georgia, Athens, GA 8. Division of Wildlife and Freshwater Fisheries, Alabama Department of Conservation and Natural Resources, Florence, AL *Corresponding author: Department of Bioinformatics and Genomics, University of North Carolina, Charlotte, NC. [email protected] Keywords: Unionidae, M. nervosa, Evolutionary genomics, gene family expansion, arXiv:2008.00131v2 [q-bio.GN] 16 Nov 2020 transposable element evolution, Cytochrome P450, Population genomics, reverse ecological genetics Short Title: Gene family expansion in Megalonaias nervosa 1 Abstract Freshwater unionid bivalves currently face severe anthropogenic challenges. Over 70% of species in the United States are threatened, endangered or extinct due to pollution, damming of waterways, and overfishing. These species are notable for their unusual life history strategy, parasite-host coevolution, and biparental mitochondria inheritance. Among this clade, the washboard mussel Megalonaias nervosa is one species that remains prevalent across the Southeastern United States, with robust population sizes. We have created a reference genome for M. -
Pages 99-108
Freshwater Mollusk Biology and Conservation 23:99–108, 2020 Ó Freshwater Mollusk Conservation Society 2020 REGULAR ARTICLE USE OF MORPHOMETRIC ANALYSES AND DNA BARCODING TO DISTINGUISH TRUNCILLA DONACIFORMIS AND TRUNCILLA TRUNCATA (BIVALVIA: UNIONIDAE) Tyler W. Beyett1, Kelly McNichols-O’Rourke2, Todd J. Morris2, and David T. Zanatta*1,3 1 Department of Biology, Central Michigan University, Mount Pleasant, MI 48859 2 Fisheries and Oceans Canada, Great Lakes Laboratory for Fisheries and Aquatic Sciences, 867 Lakeshore Rd. Burlington, ON L7S 1A1 Canada 3 Institute for Great Lakes Research, Central Michigan University, Mount Pleasant, MI 48859 ABSTRACT Closely related unionid species often overlap in shell shape and can be difficult to accurately identify in the field. Ambiguity in identification can have serious impacts on conservation efforts and population surveys of threatened and endangered species. Truncilla donaciformis and Truncilla truncata are sister species that overlap in their distributions and frequently co-occur in central North America. Because T. donaciformis is endangered in Canada and imperiled in some US jurisdictions, co-occurrence with the morphologically similar T. truncata means that misidentification could seriously impact status assessments and recovery efforts. The objectives of this study were to (1) establish species identifications of specimens using DNA barcoding (COI), (2) determine how well traditional morphometrics and geometric morphometrics accurately discriminate between the two species, and (3) determine the accuracy of field identifications relative to molecular and morphometric identifications. Truncilla specimens from four rivers in southern Ontario were photographed and visceral mass swabs were taken. Positive identifications of all specimens were obtained through DNA barcoding and comparison with sequences from GenBank. -
IN the KIAMICHI RIVER, OKLAHOMA PROJECTTITLE: Habitat Use and Reproductive Biology of Arkansia Whee/Eri (Mollusca: Unionidae) in the Kiamichi River, Oklahoma
W 2800.7 E56s No.E-12 1990/93 c.3 OKLAHOMA o HABITAT USE AND REPRODUCTIVE BIOLOGY OF ARKANSIA WHEELERI (MOLLUSCA: UNIONIDAE) IN THE KIAMICHI RIVER, OKLAHOMA PROJECTTITLE: Habitat use and reproductive biology of Arkansia whee/eri (Mollusca: Unionidae) in the Kiamichi River, Oklahoma. whee/eri is associated. In its optimal habitat, A. whee/eri is always rare: mean relative 2 abundance varies from 0.2 to 0.7% and the average density is 0.27 individuals/m • In addition, shell length data for live Amb/ema plicata, a dominant mussel species in the Kiamichi River, indicate reduced recruitment below Sardis Reservoir. Much of the Kiamichi River watershed remains forested and this probably accounts for the high diversity and general health of its mussel community in comparison to other nearby rivers. Program Narrative Objective To determine the distribution, abundance and reproductive biology of the freshwater mussel Arkansia whee/eri within different habitats in the Kiamichi River of Oklahoma. Job Procedures 1. Characterize microhabitats and determine the effects of impoundment. 2. Determine movement, growth, and survivorship of individuals. 3. Identify glochidia and fish host. 4. Examine impact of Sardis Reservoir on the populations. 5. Determine historic and current land use within the current range of Arkansia whee/eri in the Kiamichi River. A. Introduction Arkansia (syn. Arcidens) whee/eri, the Ouachita rock pocketbook, is a freshwater mussel. Originally named Arkansia whee/eri by Ortmann and Walker in 1912, Clarke (1981, 1985) recognized Arkansia as a subgenus of Arcidens. The species is considered by Clarke to be distinct. However, Turgeon et al (1988) have continued to use the binomial Arkansia whee/eri. -
Surveys and Monitoring for the Hiawatha National Forest: FY 2018 Report
Surveys and Monitoring for the Hiawatha National Forest: FY 2018 Report Prepared By: David L. Cuthrell, Michael J. Monfils, Peter J. Badra, Logan M. Rowe, and William MacKinnon Michigan Natural Features Inventory Michigan State University Extension P.O. Box 13036 Lansing, MI 48901-3036 Prepared For: Hiawatha National Forest 18 March 2019 MNFI Report No. 2019-10 Suggested Citation: Cuthrell, David L., Michael J. Monfils, Peter J. Badra, Logan M. Rowe, and William MacKinnon. 2019. Surveys and Monitoring for the Hiawatha National Forest: FY 2018 Report. Michigan Natural Features Inventory, Report No. 2019-10, Lansing, MI. 27 pp. + appendices Copyright 2019 Michigan State University Board of Trustees. MSU Extension programs and ma- terials are open to all without regard to race, color, national origin, gender, religion, age, disability, political beliefs, sexual orientation, marital status or family status. Cover: Large boulder with walking fern, Hiawatha National Forest, July 2018 (photo by Cuthrell). Table of Contents Niagara Habitat Monitoring – for rare snails, ferns and placement of data loggers (East Unit) .......................... 1 Raptor Nest Checks and Productivity Surveys (East and West Units) ................................................................... 2 Rare Plant Surveys (East and West Units) ............................................................................................................. 4 Dwarf bilberry and Northern blue surveys (West Unit) ……………………………..………………………………………………6 State Wide Bumble Bee Surveys (East -
Louisiana's Animal Species of Greatest Conservation Need (SGCN)
Louisiana's Animal Species of Greatest Conservation Need (SGCN) ‐ Rare, Threatened, and Endangered Animals ‐ 2020 MOLLUSKS Common Name Scientific Name G‐Rank S‐Rank Federal Status State Status Mucket Actinonaias ligamentina G5 S1 Rayed Creekshell Anodontoides radiatus G3 S2 Western Fanshell Cyprogenia aberti G2G3Q SH Butterfly Ellipsaria lineolata G4G5 S1 Elephant‐ear Elliptio crassidens G5 S3 Spike Elliptio dilatata G5 S2S3 Texas Pigtoe Fusconaia askewi G2G3 S3 Ebonyshell Fusconaia ebena G4G5 S3 Round Pearlshell Glebula rotundata G4G5 S4 Pink Mucket Lampsilis abrupta G2 S1 Endangered Endangered Plain Pocketbook Lampsilis cardium G5 S1 Southern Pocketbook Lampsilis ornata G5 S3 Sandbank Pocketbook Lampsilis satura G2 S2 Fatmucket Lampsilis siliquoidea G5 S2 White Heelsplitter Lasmigona complanata G5 S1 Black Sandshell Ligumia recta G4G5 S1 Louisiana Pearlshell Margaritifera hembeli G1 S1 Threatened Threatened Southern Hickorynut Obovaria jacksoniana G2 S1S2 Hickorynut Obovaria olivaria G4 S1 Alabama Hickorynut Obovaria unicolor G3 S1 Mississippi Pigtoe Pleurobema beadleianum G3 S2 Louisiana Pigtoe Pleurobema riddellii G1G2 S1S2 Pyramid Pigtoe Pleurobema rubrum G2G3 S2 Texas Heelsplitter Potamilus amphichaenus G1G2 SH Fat Pocketbook Potamilus capax G2 S1 Endangered Endangered Inflated Heelsplitter Potamilus inflatus G1G2Q S1 Threatened Threatened Ouachita Kidneyshell Ptychobranchus occidentalis G3G4 S1 Rabbitsfoot Quadrula cylindrica G3G4 S1 Threatened Threatened Monkeyface Quadrula metanevra G4 S1 Southern Creekmussel Strophitus subvexus -
Guiding Species Recovery Through Assessment of Spatial And
Guiding Species Recovery through Assessment of Spatial and Temporal Population Genetic Structure of Two Critically Endangered Freshwater Mussel Species (Bivalvia: Unionidae) Jess Walter Jones ( [email protected] ) United States Fish and Wildlife Service Timothy W. Lane Virginia Department of Game and Inland Fisheries N J Eric M. Hallerman Virginia Tech: Virginia Polytechnic Institute and State University Research Article Keywords: Freshwater mussels, Epioblasma brevidens, E. capsaeformis, endangered species, spatial and temporal genetic variation, effective population size, species recovery planning, conservation genetics Posted Date: March 16th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-282423/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/28 Abstract The Cumberlandian Combshell (Epioblasma brevidens) and Oyster Mussel (E. capsaeformis) are critically endangered freshwater mussel species native to the Tennessee and Cumberland River drainages, major tributaries of the Ohio River in the eastern United States. The Clinch River in northeastern Tennessee (TN) and southwestern Virginia (VA) harbors the only remaining stronghold population for either species, containing tens of thousands of individuals per species; however, a few smaller populations are still extant in other rivers. We collected and analyzed genetic data to assist with population restoration and recovery planning for both species. We used an 888 base-pair sequence of the mitochondrial NADH dehydrogenase 1 (ND1) gene and ten nuclear DNA microsatellite loci to assess patterns of genetic differentiation and diversity in populations at small and large spatial scales, and at a 9-year (2004 to 2013) temporal scale, which showed how quickly these populations can diverge from each other in a short time period. -
Freshwater Mussel Survey of Clinchport, Clinch River, Virginia: Augmentation Monitoring Site: 2006
Freshwater Mussel Survey of Clinchport, Clinch River, Virginia: Augmentation Monitoring Site: 2006 By: Nathan L. Eckert, Joe J. Ferraro, Michael J. Pinder, and Brian T. Watson Virginia Department of Game and Inland Fisheries Wildlife Diversity Division October 28th, 2008 Table of Contents Introduction....................................................................................................................... 4 Objective ............................................................................................................................ 5 Study Area ......................................................................................................................... 6 Methods.............................................................................................................................. 6 Results .............................................................................................................................. 10 Semi-quantitative .................................................................................................. 10 Quantitative........................................................................................................... 11 Qualitative............................................................................................................. 12 Incidental............................................................................................................... 12 Discussion........................................................................................................................ -
Freshwater Bivalve (Unioniformes) Diversity, Systematics, and Evolution: Status and Future Directions Arthur E
Natural Resource Ecology and Management Natural Resource Ecology and Management Publications 6-2008 Freshwater bivalve (Unioniformes) diversity, systematics, and evolution: status and future directions Arthur E. Bogan North Carolina State Museum of Natural Sciences Kevin J. Roe Iowa State University, [email protected] Follow this and additional works at: http://lib.dr.iastate.edu/nrem_pubs Part of the Evolution Commons, Genetics Commons, Marine Biology Commons, Natural Resources Management and Policy Commons, and the Terrestrial and Aquatic Ecology Commons The ompc lete bibliographic information for this item can be found at http://lib.dr.iastate.edu/ nrem_pubs/29. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Article is brought to you for free and open access by the Natural Resource Ecology and Management at Iowa State University Digital Repository. It has been accepted for inclusion in Natural Resource Ecology and Management Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Freshwater bivalve (Unioniformes) diversity, systematics, and evolution: status and future directions Abstract Freshwater bivalves of the order Unioniformes represent the largest bivalve radiation in freshwater. The unioniform radiation is unique in the class Bivalvia because it has an obligate parasitic larval stage on the gills or fins of fish; it is divided into 6 families, 181 genera, and ∼800 species. These families are distributed across 6 of the 7 continents and represent the most endangered group of freshwater animals alive today. North American unioniform bivalves have been the subject of study and illustration since Martin Lister, 1686, and over the past 320 y, significant gains have been made in our understanding of the evolutionary history and systematics of these animals. -
Atlas of the Freshwater Mussels (Unionidae)
1 Atlas of the Freshwater Mussels (Unionidae) (Class Bivalvia: Order Unionoida) Recorded at the Old Woman Creek National Estuarine Research Reserve & State Nature Preserve, Ohio and surrounding watersheds by Robert A. Krebs Department of Biological, Geological and Environmental Sciences Cleveland State University Cleveland, Ohio, USA 44115 September 2015 (Revised from 2009) 2 Atlas of the Freshwater Mussels (Unionidae) (Class Bivalvia: Order Unionoida) Recorded at the Old Woman Creek National Estuarine Research Reserve & State Nature Preserve, Ohio, and surrounding watersheds Acknowledgements I thank Dr. David Klarer for providing the stimulus for this project and Kristin Arend for a thorough review of the present revision. The Old Woman Creek National Estuarine Research Reserve provided housing and some equipment for local surveys while research support was provided by a Research Experiences for Undergraduates award from NSF (DBI 0243878) to B. Michael Walton, by an NOAA fellowship (NA07NOS4200018), and by an EFFRD award from Cleveland State University. Numerous students were instrumental in different aspects of the surveys: Mark Lyons, Trevor Prescott, Erin Steiner, Cal Borden, Louie Rundo, and John Hook. Specimens were collected under Ohio Scientific Collecting Permits 194 (2006), 141 (2007), and 11-101 (2008). The Old Woman Creek National Estuarine Research Reserve in Ohio is part of the National Estuarine Research Reserve System (NERRS), established by section 315 of the Coastal Zone Management Act, as amended. Additional information on these preserves and programs is available from the Estuarine Reserves Division, Office for Coastal Management, National Oceanic and Atmospheric Administration, U. S. Department of Commerce, 1305 East West Highway, Silver Spring, MD 20910. -
Endangered Species Act Section 7 Consultation Final Programmatic
Endangered Species Act Section 7 Consultation Final Programmatic Biological Opinion and Conference Opinion on the United States Department of the Interior Office of Surface Mining Reclamation and Enforcement’s Surface Mining Control and Reclamation Act Title V Regulatory Program U.S. Fish and Wildlife Service Ecological Services Program Division of Environmental Review Falls Church, Virginia October 16, 2020 Table of Contents 1 Introduction .......................................................................................................................3 2 Consultation History .........................................................................................................4 3 Background .......................................................................................................................5 4 Description of the Action ...................................................................................................7 The Mining Process .............................................................................................................. 8 4.1.1 Exploration ........................................................................................................................ 8 4.1.2 Erosion and Sedimentation Controls .................................................................................. 9 4.1.3 Clearing and Grubbing ....................................................................................................... 9 4.1.4 Excavation of Overburden and Coal ................................................................................ -
Species Assessment for Fat Pocketbook
Species Status Assessment Class: Bivalvia Family: Unionidae Scientific Name: Potamilus capax Common Name: Fat pocketbook Species synopsis: Potamilus capax is thought to have been extirpated in New York State for over a century (Strayer and Jirka 1997), and has not been found at historical sites during recent surveys (Mahar & Landry 2013). P. capax is a member of the widely distributed genus Potamilus. P. capax belongs to the subfamily Ambleminae and the tribe Lampsilini, which includes 17 extant and 6 likely extirpated New York species of the genera Actinonaias, Epioblasma, Lampsilis, Leptodea, Ligumia, Obovaria, Potamilus, Ptychobranchus, Toxolasma, Truncilla, and Villosa (Haag 2012; Graf and Cummings 2011). This species is listed as state and federally endangered and is ranked by The Natural Heritage Program as historic in New York and as imperiled throughout its range. It is distributed in the Lower Ohio River system and Mississippi River drainages in Arkansas and Nebraska (Watters et al. 2009), where P. capax abundance is stable, with multiple reproductively viable sites. A current threat to the species is that populations are sporadic and disjunct, with the entire species only inhabiting approximately 20 sites (NatureServe 2013). 1 I. Status a. Current and Legal Protected Status i. Federal ____ Endangered_______________Candidate? ___________ ii. New York _____Endangered__________________________________________________ b. Natural Heritage Program Rank i. Global _____G2- Imperiled_______________________________________________ ii. New York _____SH - Historic_______ Tracked by NYNHP? ______Yes___ Other Rank: U.S. Endangered Species Act (USESA): LE: Listed endangered (1976) IUCN Red List Category: Critically endangered Convention on International Trade in Endangered Species Protection Status (CITES): Appendix I American Fisheries Society Status: Endangered (1993) Status Discussion: The peripheral range (where P. -
Species Biological Report Neosho Mucket (Lampsilis Rafinesqueana)
Species Biological Report Neosho Mucket (Lampsilis rafinesqueana) Cover photo: Dr. Chris Barnhart (Missouri State University) Prepared by: The Neosho Mucket Recovery Team This species biological report informs the Draft Recovery Plan for the Neosho Mucket (Lampsilis rafinesqueana) (U.S. Fish and Wildlife Service 2017). The Species Biological Report is a comprehensive biological status review by the U.S. Fish and Wildlife Service (Service) for the Neosho Mucket and provides an account of species overall viability. A Recovery Implementation Strategy, which provides the expanded narrative for the recovery activities and the implementation schedule, is available at https://www.fws.gov/arkansas-es/. The Recovery Implementation Strategy and Species Biological Report are finalized separately from the Recovery Plan and will be updated on a routine basis. Executive Summary The Neosho Mucket is a freshwater mussel endemic to the Illinois, Neosho, and Verdigris River basins in Arkansas, Kansas, Missouri, and Oklahoma. It is associated with shallow riffles and runs comprising gravel substrate and moderate to swift currents, but prefers near-shore areas or areas out of the main current in Shoal Creek and Illinois River. It does not occur in reservoirs lacking riverine characteristics. The life-history traits and habitat requirements of the Neosho Mucket make it extremely susceptible to environmental change (e.g., droughts, sedimentation, chemical contaminants). Mechanisms leading to the decline of Neosho Mucket range from local (e.g., riparian clearing, chemical contaminants, etc.), to regional influences (e.g., altered flow regimes, channelization, etc.), to global climate change. The synergistic (interaction of two or more components) effects of threats are often complex in aquatic environments, making it difficult to predict changes in mussel and fish host(s) distribution, abundance, and habitat availability that may result from these effects.