Applications of Metal-Organic Frameworks in Heterogeneous Supramolecular Catalysis

Total Page:16

File Type:pdf, Size:1020Kb

Applications of Metal-Organic Frameworks in Heterogeneous Supramolecular Catalysis Chemical Society Reviews Applications of Metal -Organic Frameworks in Heterogeneous Supramolecular Catalysis Journal: Chemical Society Reviews Manuscript ID: CS-REV-02-2014-000094.R1 Article Type: Review Article Date Submitted by the Author: 07-May-2014 Complete List of Authors: Liu, Jiewei; Sun Yat-Sen University, Chen, Lianfen; Sun Yat-Sen University, Cui, Hao; Sun Yat-Sen University, Zhang, Jianyong; Sun Yat-Sen University, School of Chemistry and Chemical Engineering Zhang, Li; Sun Yat-sen University, School of chemistry and chemical engineering Su, Cheng-Yong; Sun Yat-Sen University, School of Chemistry and Chemical Engineering Page 1 of 52 Chemical Society Reviews Journal Name RSC Publishing ARTICLE Applications of Metal-Organic Frameworks in Heterogeneous Supramolecular Catalysis Cite this: DOI: 10.1039/x0xx00000x Jiewei Liu, Lianfen Chen, Hao Cui, Jianyong Zhang, Li Zhang* and Cheng-Yong Su* Received 00th January 2012, Accepted 00th January 2012 This review summarizes the use of metal-organic frameworks (MOFs) as a versatile supramolecular platform to develop heterogeneous catalysts for a variety of organic reactions, DOI: 10.1039/x0xx00000x especially in liquid-phase reactions. Following a background introduction about catalytic www.rsc.org/ relevance to various metal-organic materials, crystal engineering of MOFs, characterization and evaluation methods of MOF catalysis, we categorize catalytic MOFs based on the types of active sites, including coordinatively unsaturated metal sites (CUMs), metalloligands, functional organic sites (FOS), as well as metal nanoparticles (MNPs) embedded in the cavities. Throughout the review, we emphasize the incidental or deliberate formation of active sites, the stability, heterogeneity and shape/size selectivity for MOF catalysis. Finally, we briefly introduce their relevance to photo- and biomimetic catalysis, and compare MOFs with other typical porous solids such as zeolites and mesoporous silica with regard to their different attributes, and provide our view on future trends and developments of MOF-based catalysis. 1. Introduction (MOGs) which are jelly-like materials containing cross-linking coordination network.5 In point of catalysis, type-I MOMs may 1.1 Assembly of MOMs with Catalytic Relevance represent the simple but most popular structural models investigated in transition metal catalysis, in special cases the Supramolecular catalysis inherent in natural enzymatic systems supramolecular catalysis can be achieved.6 The type-II MOMs has been pursued for decades with the goals to develop are pertinent to supramolecular catalysis because they are able “artificial enzyme catalysts” for synthetic chemistry or to to provide specific substrates recognition and coordination understand fundamental mechanisms with regard to enzyme space for stereochemical confinement. 2 Both these two types of active sites. 1 Supramolecular coordination chemistry provides a coordination compounds could be studied in homogeneous promising platform for such supramolecular catalytic purposes, conditions. On the contrary, MOFs and MOGs are applicable in for example, to mimic pocket nature or host-guest interactions heterogeneous catalysis. 3,5 In contrast to MOGs and amorphous of enzymes by assembly of various size and shape predefined CPs, MOFs are typically crystalline porous solids resembling nanoreactors or molecular flasks.2 Recently, rapid progress in zeolites, able to use a minimum amount of metal ions and supramolecular catalysis was achieved for porous coordination organic ligands to build maximum surface areas with solids which can offer well-defined coordination nanospace and predictable, controllable, tailorable and post-modifiable pores functional groups/sites appropriate for catalysis.3 These and cavities. Such intrinsic structure attributes make MOFs persistent catalytic interests take the advantages that the emerge as the new interface between heterogeneous catalysis coordination assembly feature in good bond direction, moderate and supramolecular chemistry to behave as promising bond energy, self-correcting kinetic reversibility and plentiful candidates for heterogeneous supramolecular catalysis. metal geometries, thus driving the metal- or ligand-directed self-assembly to produce a variety of metal-organic materials (MOMs) 4 with varied relevance to catalysis. As exemplified in Fig. 1, four prototypes of MOMs with distinct structural identities and attributes are often pursued for multifarious catalytic purposes: (I) mon- or multinuclear metal complexes possessing specific functionality in a supramolecular sense; (II) discrete coordination rings, cages, tubes or capsules attributable to metal-organic polygons/polyhedra (MOPs) or metal-organic containers/cages (MOCs); (III) infinite metal- organic frameworks (MOFs) or coordination polymers (CPs) which often possess periodically repeating units in crystalline solid-state, including amorphous CPs which also subject to a Fig. 1 Schematic illustration of representative structural models wide range of catalytic studies,d,e and (IV) metal-organic gels driven by metal-ligand coordination assembly. This journal is © The Royal Society of Chemistry 2013 J. Name ., 2013, 00 , 1-3 | 1 Chemical Society Reviews Page 2 of 52 ARTICLE Journal Name Since MOFs possess uniform, continuous and permeable though, investigations on catalytic applications of MOFs are channels, they can provide active sites on the pore surface and relatively lagging behind other topics, which might be due to, in transport reactants/products to or from inner reactive vessels general, the relatively low chemical, hydrolytic and thermal (such as cagelike cavities inside the MOFs). In a stability (usually stable under 350–400 °C) of MOFs. supramolecular sense, the uniqueness of MOF structures lies in Nevertheless, the situation improved dramatically since 2009. the coordination-driven self-assembly, the tunable pore sizes, Fig. 2 shows the development of MOF fields on the basis of exceptionally high pore volume and surface area, and versatile articles appeared in the last twenty years. It is clear that MOF inner cavity (one- to three-dimensional pores capable of catalysis underwent a rapid development in recent five years. incorporating interior cages and windows), which endow the Paper of MOF catalysis catalytic microenvironment with a variety of tunable properties, 3000 Paper of MOF such as charge, polarity, chirality, redox potential, photoactivity, hydrophobicity/hydrophilicity, aromatic/lipophilic character, 2500 and stereochemistry. The porosity of MOFs spans from ultramicroporous to mesoporous materials, well bridging the 2000 gap between the small pore size of zeolites and large pore size of mesoporous silicate materials. This makes supramolecular 1500 catalysis easily taking place in an appropriate coordination space under nanoscale confinement, allowing multicomponent 1000 reactions as well as a wide range of substrates from small molecules to large polyaromatics and carbohydrates. 500 Meanwhile, using MOFs as heterogeneous supramolecular catalysts could take advantages of the following principal 0 characters: (1) enhanced catalyst reactivity and stability due to 2002 2004 2006 2008 2010 2012 Year the spatial separation of multiple catalytic sites in the framework, which also can contribute to cooperative catalysis character of enzymes; (2) permeable channels and coordination Fig. 2 Development of MOF fields in comparison to the MOF nanospace which bestow recognition effects and allow the catalysis in the last ten years (SciFinder until Jan. 15, 2014). facile access of substrates to the catalytically active sites The progress in MOF catalysis may thank to the gradual located within the cavities, endowing the catalytic reactions 8 with shape-, size-, chemo-, or enantio-selectivity; (3) maturation of crystal engineering. Engineering of crystalline framework flexibility and dynamics 7 in the solid-state, which MOF solid materials demands proper design and synthetic may bring new applications to heterogeneous catalysis by strategies to organize basic building blocks (BBs) strictly in a enforcing physical, chemical and environmental stimuli periodic way of specific network topology. This is implicit in responses, and utilize the guest-host responses to accomplish two interrelated steps: (a) choosing or creating BBs with transition-state recognition and regulation reminiscent of desired structure and property, and (b) connecting or arranging allosteric nature of enzymes; and (4) easy tunability and BBs through predefined interactions or crystal growth. modification of the polar-nonpolar and hydrophobic– Undoubtedly, advances in synthetic strategy and design hydrophilic properties of the porous solids, which is essential methodology have motivated in-depth study in functionality of for many bimolecular reactions, and helpful to practical crystalline solids, shifting research interests from original synthetic chemistry. Moreover, the ability to separate and reuse structural engineering of MOFs to the functional engineering of a heterogeneous catalyst would be highly attractive in large- MOFs targeting in collective or specific property like catalysis. scale reactions, where separation and waste disposal can be Crystal engineering of MOFs for catalytic purpose relies not costly. The last but important feature of MOFs for only on the permanent porosity, but also on other framework supramolecular catalysis is that, assembly process of MOFs attributes like reversible structural
Recommended publications
  • A Supramolecular-Hydrogel-Encapsulated Hemin As an Artificial Enzyme to Mimic Peroxidase This Work Was Partially Supported by R
    Angewandte Chemie DOI: 10.1002/anie.200700404 Enzyme Mimetics A Supramolecular-Hydrogel-Encapsulated Hemin as an Artificial Enzyme to Mimic Peroxidase** Qigang Wang, Zhimou Yang, Xieqiu Zhang, Xudong Xiao, Chi K. Chang,* and Bing Xu* A challenge in chemistry is an artificial enzyme[1] that mimics biomineralization,[15] and as biomaterials for wound heal- the functions of the natural system but is simpler than ing.[13] The application of supramolecular hydrogels as the proteins. The intensive development of artificial enzymes that skeletons of artificial enzymes has yet to be explored. Similar use a variety of matrices,[2] the rapid progress in supramolec- to peptide chains that form active sites in enzymes, the self- ular gels,[3] and the apparent “superactivity” exhibited by assembled nanofibers of amino acids in the supramolecular supramolecular hydrogel-immobilized enzymes,[4] prompted hydrogels could act as the matrices of artificial enzymes. Thus, us to evaluate whether supramolecular hydrogels will the supramolecular-hydrogel systems serve two functions: improve the activity of artificial enzymes for catalyzing 1) as the skeletons of the artificial enzyme to aid the function reactions in water or in organic media. To demonstrate the of the active site (e.g., hemin) and, 2) as the immobilization concept, we used hemin as the prosthetic group to mimic carriers to facilitate the recovery of the catalysts in practical peroxidase, a ubiquitous enzyme that catalyzes the oxidation applications. of a broad range of organic and inorganic substrates by Herein, we mixed hemin chloride (3) into the hydrogel hydrogen peroxide or organic peroxides. The structures of the formed by the self-assembly of two simple derivatives of active site as well as the reaction mechanism of peroxidases amino acids (1 and 2).
    [Show full text]
  • NBO Applications, 2020
    NBO Bibliography 2020 2531 publications – Revised and compiled by Ariel Andrea on Aug. 9, 2021 Aarabi, M.; Gholami, S.; Grabowski, S. J. S-H ... O and O-H ... O Hydrogen Bonds-Comparison of Dimers of Thiocarboxylic and Carboxylic Acids Chemphyschem, (21): 1653-1664 2020. 10.1002/cphc.202000131 Aarthi, K. V.; Rajagopal, H.; Muthu, S.; Jayanthi, V.; Girija, R. Quantum chemical calculations, spectroscopic investigation and molecular docking analysis of 4-chloro- N-methylpyridine-2-carboxamide Journal of Molecular Structure, (1210) 2020. 10.1016/j.molstruc.2020.128053 Abad, N.; Lgaz, H.; Atioglu, Z.; Akkurt, M.; Mague, J. T.; Ali, I. H.; Chung, I. M.; Salghi, R.; Essassi, E.; Ramli, Y. Synthesis, crystal structure, hirshfeld surface analysis, DFT computations and molecular dynamics study of 2-(benzyloxy)-3-phenylquinoxaline Journal of Molecular Structure, (1221) 2020. 10.1016/j.molstruc.2020.128727 Abbenseth, J.; Wtjen, F.; Finger, M.; Schneider, S. The Metaphosphite (PO2-) Anion as a Ligand Angewandte Chemie-International Edition, (59): 23574-23578 2020. 10.1002/anie.202011750 Abbenseth, J.; Goicoechea, J. M. Recent developments in the chemistry of non-trigonal pnictogen pincer compounds: from bonding to catalysis Chemical Science, (11): 9728-9740 2020. 10.1039/d0sc03819a Abbenseth, J.; Schneider, S. A Terminal Chlorophosphinidene Complex Zeitschrift Fur Anorganische Und Allgemeine Chemie, (646): 565-569 2020. 10.1002/zaac.202000010 Abbiche, K.; Acharjee, N.; Salah, M.; Hilali, M.; Laknifli, A.; Komiha, N.; Marakchi, K. Unveiling the mechanism and selectivity of 3+2 cycloaddition reactions of benzonitrile oxide to ethyl trans-cinnamate, ethyl crotonate and trans-2-penten-1-ol through DFT analysis Journal of Molecular Modeling, (26) 2020.
    [Show full text]
  • Fe(III) Porphyrin Metal–Organic Framework As an Artificial Enzyme Mimics and Its Application in Biosensing of Glucose and H2O2
    Source: Aghayan, M., Mahmoudi, A., Nazari, K., Dehghanpour, S., Sohrabi, S., Sazegar, M.R. and Mohammadian- Tabrizi, N., 2019. Fe (III) porphyrin metal–organic framework as an artificial enzyme mimics and its application in biosensing of glucose and H2O2. Journal of Porous Materials, 26(5), pp.1507-1521. DOI: 10.1007/s10934-019-00748-4 Fe(III) porphyrin metal–organic framework as an artificial enzyme mimics and its application in biosensing of glucose and H2O2 Morvarid Aghayan1, Ali Mahmoudi1, Khodadad Nazari2, Saeed Dehghanpour3, Samaneh Sohrabi3, Mohammad Reza Sazegar1, Navid Mohammadian‑Tabrizi4 1 Department of Chemistry, Faculty of Science, North Tehran Branch, Islamic Azad University, Tehran, Iran 2 Research Institute of Petroleum Industry, N.I.O.C, Tehran, Iran 3 Department of Chemistry, Faculty of Science, Alzahra University, Tehran, Iran 4 Department of Chemistry, Faculty of Science, University of Tehran, Tehran, Iran Abstract Metal–organic frameworks with diverse structures and unique properties have demonstrated that can be an ideal substitute for natural enzymes in colorimetric sensing platform for analyte detection in various fields such as environmental chemistry, biotechnology and clinical diagnostics, which have attracted the scientist’s attention, recently. In this study, a porous coordination network (denoted as PCN-222) was synthesized as a new biomimetic material from an iron linked tetrakis (4-carboxyphenyl) porphyrin (named as Fe-TCPP) as a heme-like ligand and Zr6 linker as a node. This catalyst shows the peroxidase and catalase activities clearly. The mechanism of peroxidase activity for PCN-222 was investigated using the spectrophotometric methods and its activity was compared with the other nanoparticles which, the results showed a higher activity than the other catalysts.
    [Show full text]
  • A Mechanistic Rationale Approach Revealed the Unexpected
    A Mechanistic Rationale Approach Revealed the Unexpected Chemoselectivity of an Artificial Ru-Dependent Oxidase: A Dual Experimental/Theoretical Approach Sarah Lopez, David Michael Mayes, Serge Crouzy, Christine Cavazza, Chloé Leprêtre, Yohann Moreau, Nicolai Burzlaff, Caroline Marchi-Delapierre, Stéphane Ménage To cite this version: Sarah Lopez, David Michael Mayes, Serge Crouzy, Christine Cavazza, Chloé Leprêtre, et al.. A Mech- anistic Rationale Approach Revealed the Unexpected Chemoselectivity of an Artificial Ru-Dependent Oxidase: A Dual Experimental/Theoretical Approach. ACS Catalysis, American Chemical Society, 2020, 10 (10), pp.5631-5645. 10.1021/acscatal.9b04904. hal-02865406 HAL Id: hal-02865406 https://hal.archives-ouvertes.fr/hal-02865406 Submitted on 26 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A Mechanistic Rationale Approach Revealed the Unexpected Chemoselectivity of an Artificial Ru-dependent Oxidase - A Dual Experimental/Theoretical Approach By Sarah Lopez,1,2 David Michael Mayes,1 Serge Crouzy,1 Christine Cavazza,1 Chloé Leprêtre,1 Yohann Moreau,1 Nicolai Burzlaff,3 Caroline Marchi-Delapierre*1 and Stéphane Ménage1 [1] Univ. Grenoble Alpes, CEA, CNRS, IRIG, CBM, F-38000 Grenoble, France. [2] Univ. Grenoble-Alpes, DCM-SeRCO, Grenoble, France.
    [Show full text]
  • Catalytic, Theoretical, and Biological Investigation of an Enzyme Mimic Model
    Turkish Journal of Chemistry Turk J Chem (2021) 45: 1270-1278 http://journals.tubitak.gov.tr/chem/ © TÜBİTAK Research Article doi:10.3906/kim-2104-51 Catalytic, theoretical, and biological investigation of an enzyme mimic model Gülcihan GÜLSEREN* Department of Molecular Biology and Genetics, Faculty of Agriculture and Natural Sciences, Konya Food and Agriculture University, Turkey Received: 20.04.2021 Accepted/Published Online: 12.06.2021 Final Version: 27.08.2021 Abstract: Artificial catalyst studies were always stayed at the kinetics investigation level, in this work bioactivity of designed catalyst were shown by the induction of biomineralization of the cells, indicating the possible use of enzyme mimics for biological applications. The development of artificial enzymes is a continuous quest for the development of tailored catalysts with improved activity and stability. Understanding the catalytic mechanism is a replaceable step for catalytic studies and artificial enzyme mimics provide an alternative way for catalysis and a better understanding of catalytic pathways at the same time. Here we designed an artificial catalyst model by decorating peptide nanofibers with a covalently conjugated catalytic triad sequence. Owing to the self-assembling nature of the peptide amphiphiles, multiple action units can be presented on the surface for enhanced catalytic performance. The designed catalyst has shown an enzyme-like kinetics profile with a significant substrate affinity. The cooperative action in between catalytic triad amino acids has shown improved catalytic activity in comparison to only the histidine-containing control group. Histidine is an irreplaceable contributor to catalytic action and this is an additional reason for control group selection. This new method based on the self-assembly of covalently conjugated action units offers a new platform for enzyme investigations and their further applications.
    [Show full text]
  • Mechanistic Studies of Biomimetic Reactions by Synthetic Enzyme Mimics by William Michael Hart-Cooper a Dissertation Submitted I
    Mechanistic Studies of Biomimetic Reactions by Synthetic Enzyme Mimics By William Michael Hart-Cooper A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Chemistry in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Kenneth N. Raymond, Co-chair Professor Robert G. Bergman, Co-chair Professor Alexander Katz Summer 2015 Abstract Mechanistic Studies of Biomimetic Reactions by Synthetic Enzyme Mimics By William Michael Hart-Cooper Doctor of Philosophy in Chemistry University of California, Berkeley Professor Kenneth N. Raymond, Co-chair Professor Robert G. Bergman, Co-chair Chapter 1. A brief introduction to common synthetic host structures and justification for the work described herein is provided. Chapter 2. The development of 1 and related hosts as a new class terpene synthase mimics that catalyze intramolecular Prins cyclizations. The property of water exclusion is observed. Host 1 is also shown to compensate for the gem-disubstituent effect. Chapter 3. The development of new terephthalamide hosts enabled an investigation of the effect of host structure on the enantio- and diastereoselectivity of these reactions, as well as a simple kinetic analysis. Rate accelerations and turnover numbers are notably high. Chapter 4. The mechanism of proton transfer in an archetypal enzyme mimic is studied using amide hydrogen deuterium exchange (HDX) kinetics. Collectively, these data shed light on the role of acid, base and water-mediated proton transfer in a synthetic active site with relevance to proton-mediated catalysis. Moreover, the emergent mechanism of solvent-occupied proton transfer raises the prospect of designable hosts with properties that are unique to the integration of their parts Chapter 5.
    [Show full text]
  • Dynamic Approaches Towards Catalyst Discovery
    MICROREVIEW DOI: 10.1002/ejoc.200901338 Dynamic Approaches towards Catalyst Discovery Giulio Gasparini,[a] Marta Dal Molin,[a] and Leonard J. Prins*[a] Keywords: Catalyst discovery / Dynamic combinatorial chemistry / Supramolecular catalysis / Noncovalent interactions / Molecular recognition Catalyst development is a challenging task, caused by the tion as it allows for self-assembly and self-selection pro- subtle effects that determine whether a catalyst is efficient or cesses. Synthesis is restricted to the building blocks after not. Success is enhanced by using methodology that relies which diversity is simply generated upon mixing. Self-selec- to a smaller extent on rational design. Combinatorial high- tion of the best catalyst by the target reaction relieves the throughput approaches allow for a systematic exploration of burden of rational design. Molecular systems exhibiting ca- chemical space, but require an easy synthetic access to struc- talysis as an emerging property due to a cooperative inter- turally diverse catalysts. The use of dynamic or reversible play of the molecular components are envisioned for the fu- chemistry for the construction of catalysts is an attractive op- ture. 1. Introduction noncovalent[5] or a combination[6]), to connect these sub- units offers a series of unique advantages and possibilities Catalyst discovery is one of the central themes of chemis- that will be discussed here. try because of the growing need for highly efficient and se- In this review we describe our own contributions in this lective chemical transformations with a low environmental area embedded within the context of other dynamic ap- [1] impact. Catalyst discovery is very challenging as it re- proaches towards catalyst discovery.
    [Show full text]
  • Computational Studies on Host-Guest Catalysis
    COMPUTATIONAL STUDIES ON HOST-GUEST CATALYSIS. Charles Goehry Dipòsit Legal: T 1545-2014 ADVERTIMENT. L'accés als continguts d'aquesta tesi doctoral i la seva utilització ha de respectar els drets de la persona autora. Pot ser utilitzada per a consulta o estudi personal, així com en activitats o materials d'investigació i docència en els termes establerts a l'art. 32 del Text Refós de la Llei de Propietat Intel·lectual (RDL 1/1996). Per altres utilitzacions es requereix l'autorització prèvia i expressa de la persona autora. En qualsevol cas, en la utilització dels seus continguts caldrà indicar de forma clara el nom i cognoms de la persona autora i el títol de la tesi doctoral. No s'autoritza la seva reproducció o altres formes d'explotació efectuades amb finalitats de lucre ni la seva comunicació pública des d'un lloc aliè al servei TDX. Tampoc s'autoritza la presentació del seu contingut en una finestra o marc aliè a TDX (framing). Aquesta reserva de drets afecta tant als continguts de la tesi com als seus resums i índexs. ADVERTENCIA. El acceso a los contenidos de esta tesis doctoral y su utilización debe respetar los derechos de la persona autora. Puede ser utilizada para consulta o estudio personal, así como en actividades o materiales de investigación y docencia en los términos establecidos en el art. 32 del Texto Refundido de la Ley de Propiedad Intelectual (RDL 1/1996). Para otros usos se requiere la autorización previa y expresa de la persona autora. En cualquier caso, en la utilización de sus contenidos se deberá indicar de forma clara el nombre y apellidos de la persona autora y el título de la tesis doctoral.
    [Show full text]
  • Proton Affinity Studies of Nickel N2S2 Complexes and Control of Aggregation
    JBIC Journal of Biological Inorganic Chemistry https://doi.org/10.1007/s00775-019-01671-4 ORIGINAL PAPER Proton afnity studies of nickel N2S2 complexes and control of aggregation Nicholas A. Arnet1 · Nattamai Bhuvanesh1 · Marcetta Y. Darensbourg1 Received: 1 April 2019 / Accepted: 22 May 2019 © Society for Biological Inorganic Chemistry (SBIC) 2019 Abstract The thiolate ligands of [NiFe]-H2ase enzymes have been implicated as proton-binding sites for the reduction/oxidation of + H /H2. This study examines the ligand efect on reactivity of NiN2S2 complexes with an array of acids in methanol solu- tion. UV–Vis absorption spectroscopy is utilized to observe the transformation from the monomeric species to a trimetallic complex that is formed after proton-induced ligand dissociation. Nickel complexes with a fexible (propyl and ethyl) N to N linker were found to readily form the trimetallic complex with acids as weak as ammonium (pKa = 10.9 in methanol). A more constrained nickel complex with a diazacycloheptane N to N linker required stronger acids such as 2,2-dichloroacetic + acid (pKa = 6.38 in methanol) to form the trimetallic complex and featured the formation of an NiN 2S2H complex with acetic acid (pK a = 9.63 in methanol). The most strained ligand, which featured a diazacyclohexane backbone, readily disso- ciated from the nickel center upon mixture with acids with pKa ≤ 9.63 and showed no evidence of a trimetallic species with any acid. This research highlights the dramatic diferences in reactivity with proton sources that can be imparted by minor alterations to ligand geometry and strain. Graphical abstract Electronic supplementary material The online version of this article (https ://doi.org/10.1007/s0077 5-019-01671 -4) contains supplementary material, which is available to authorized users.
    [Show full text]
  • Artificial Heme Enzymes for the Construction of Gold-Based
    International Journal of Molecular Sciences Article Artificial Heme Enzymes for the Construction of Gold-Based Biomaterials Gerardo Zambrano 1 , Emmanuel Ruggiero 1,†, Anna Malafronte 1, Marco Chino 1 , Ornella Maglio 1,2 , Vincenzo Pavone 1, Flavia Nastri 1,* and Angela Lombardi 1,* 1 Department of Chemical Sciences, University of Napoli “Federico II” Via Cintia, 80126 Napoli, Italy; [email protected] (G.Z.); [email protected] (E.R.); [email protected] (A.M.); [email protected] (M.C.); [email protected] (O.M.); [email protected] (V.P.) 2 Istituto di Biostrutture e Bioimmagini, CNR, Via Mezzocannone 16, 80134 Napoli, Italy * Correspondence: fl[email protected] (F.N.); [email protected] (A.L.); Tel.: +39-081-674419 (F.N.); +39-081-674418 (A.L.) † Current address: BASF SE, Dept. Material Physics, Carl-Bosch-Strasse 38, 67056 Ludwigshafen, Germany. Received: 30 July 2018; Accepted: 19 September 2018; Published: 24 September 2018 Abstract: Many efforts are continuously devoted to the construction of hybrid biomaterials for specific applications, by immobilizing enzymes on different types of surfaces and/or nanomaterials. In addition, advances in computational, molecular and structural biology have led to a variety of strategies for designing and engineering artificial enzymes with defined catalytic properties. Here, we report the conjugation of an artificial heme enzyme (MIMO) with lipoic acid (LA) as a building block for the development of gold-based biomaterials. We show that the artificial MIMO@LA can be successfully conjugated to gold nanoparticles or immobilized onto gold electrode surfaces, displaying quasi-reversible redox properties and peroxidase activity.
    [Show full text]
  • Investigation of Nitrous Oxide
    INVESTIGATION OF NITROUS OXIDE BIOSYNTHESIS BY A BACTERIAL NITRIC OXIDE REDUCTASE (NOR) AND AN ENGINEERED NOR MIMIC USING STABLE ISOTOPE RATIO MASS SPECTROMETRY By Clarisse Marie Finders A THESIS Submitted to Michigan State University in partial fulfillment of the requirements for the degree of Biochemistry and Molecular Biology—Master of Science 2018 ABSTRACT INVESTIGATION OF NITROUS OXIDE BIOSYNTHESIS BY A BACTERIAL NITRIC OXIDE REDUCTASE (NOR) AND AN ENGINEERED NOR MIMIC USING STABLE ISOTOPE RATIO MASS SPECTROMETRY By Clarisse Marie Finders While carbon dioxide (CO2) is the most prevalent greenhouse gas, nitrous oxide (N2O) is far more potent, with a global warming potential ~265 times greater than that of carbon dioxide over 1 a 100-year period. Additionally, N2O is capable of destroying ozone, making it doubly concerning as a greenhouse gas. Approximately half of the N2O produced yearly is from anthropogenic sources. The largest contributor to anthropogenic N2O is the over-fertilization of agricultural soils, which fuels a host of microbial nitrogen cycling processes that produce N2O. One of these processes is denitrification, and N2O is known to be an obligate intermediate in this process. In denitrification, N2O is synthesized by an enzyme known as nitric oxide reductase (NOR). A thorough understanding of the enzymatic mechanisms by which N2O is produced is essential to mitigating anthropogenic N2O emissions. To this end, this thesis contains the examination of N2O produced by a bacterial cytochrome c NOR (cNOR) from Paracoccus dentrificans and a cNOR mimic, I107EFeBMb, using stable isotope ratio mass spectrometry (IRMS). The first chapter provides the reader with an introduction to the nitrogen cycle, the known NORs, and the basics of isotope theory.
    [Show full text]
  • Nanoparticle As Supramolecular Platform for Delivery and Bioorthogonal Catalysis
    University of Massachusetts Amherst ScholarWorks@UMass Amherst Doctoral Dissertations Dissertations and Theses November 2017 NANOPARTICLE AS SUPRAMOLECULAR PLATFORM FOR DELIVERY AND BIOORTHOGONAL CATALYSIS Gulen Yesilbag Tonga University of Massachusetts Amherst Follow this and additional works at: https://scholarworks.umass.edu/dissertations_2 Part of the Materials Chemistry Commons, Medicinal-Pharmaceutical Chemistry Commons, and the Organic Chemistry Commons Recommended Citation Yesilbag Tonga, Gulen, "NANOPARTICLE AS SUPRAMOLECULAR PLATFORM FOR DELIVERY AND BIOORTHOGONAL CATALYSIS" (2017). Doctoral Dissertations. 1141. https://doi.org/10.7275/10521708.0 https://scholarworks.umass.edu/dissertations_2/1141 This Open Access Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks@UMass Amherst. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of ScholarWorks@UMass Amherst. For more information, please contact [email protected]. NANOPARTICLE AS SUPRAMOLECULAR PLATFORM FOR DELIVERY AND BIOORTHOGONAL CATALYSIS A Dissertation Presented by GULEN YESILBAG TONGA Submitted to the Graduate School of the University of Massachusetts Amherst in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY September 2017 Department of Chemistry i © Copyright by Gulen Yesilbag Tonga 2017 All Rights Reserved ii NANOPARTICLE AS SUPRAMOLECULAR PLATFORM FOR DELIVERY AND BIOORTHOGONAL CATALYSIS A Dissertation Presented by GULEN YESILBAG
    [Show full text]