Brain-Derived Neurotrophic Factor Mediates Activity- Dependent Dendritic Growth in Nonpyramidal Neocortical Interneurons in Developing Organotypic Cultures
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Automated Sorting of Neuronal Trees in Fluorescent Images of Neuronal
www.nature.com/scientificreports OPEN Automated sorting of neuronal trees in fuorescent images of neuronal networks using Received: 29 August 2017 Accepted: 10 April 2018 NeuroTreeTracer Published: xx xx xxxx Cihan Kayasandik1, Pooran Negi1, Fernanda Laezza2, Manos Papadakis1 & Demetrio Labate 1 Fluorescence confocal microscopy has become increasingly more important in neuroscience due to its applications in image-based screening and profling of neurons. Multispectral confocal imaging is useful to simultaneously probe for distribution of multiple analytes over networks of neurons. However, current automated image analysis algorithms are not designed to extract single-neuron arbors in images where neurons are not separated, hampering the ability map fuorescence signals at the single cell level. To overcome this limitation, we introduce NeuroTreeTracer – a novel image processing framework aimed at automatically extracting and sorting single-neuron traces in fuorescent images of multicellular neuronal networks. This method applies directional multiscale flters for automated segmentation of neurons and soma detection, and includes a novel tracing routine that sorts neuronal trees in the image by resolving network connectivity even when neurites appear to intersect. By extracting each neuronal tree, NeuroTreetracer enables to automatically quantify the spatial distribution of analytes of interest in the subcellular compartments of individual neurons. This software is released open-source and freely available with the goal to facilitate applications in neuron screening and profling. Neuronal reconstruction is critical in a variety of neurobiological studies. During the last two decades, a large number of algorithms and sofware toolkits were developed aiming at providing digital reconstruction of neurons from images acquired using bright feld or fuorescent microscopy1. -
BDNF Signaling: Harnessing Stress to Battle Mood Disorder Pawel Licznerskia and Elizabeth A
COMMENTARY COMMENTARY BDNF signaling: Harnessing stress to battle mood disorder Pawel Licznerskia and Elizabeth A. Jonasa,1 The link between the onset of major depressive disor- double knockout (DKO) of Gαi1 and Gαi3 results der (MDD) and loss of neurotrophins in the brain is in inhibition of BDNF-induced activation of Akt– of interest to clinicians and basic scientists. MDD is mTORC1 and ERK pathways. shRNA-mediated down- caused by a combination of genetic, environmental, and regulation of Gαi1 and Gαi3 also affects dendritic psychological factors. Trauma, chronic health problems, outgrowth and formation of dendritic spines in the and substance abuse are risks (1), as are grief and other hippocampus. Specific behavioral studies performed purely emotional/cognitive stresses (2, 3). MDD alters by the Marshall team reveal that shRNA knockdown of the expression of neurotrophins, such as brain-derived Gαi1 and Gαi3 or complete DKO cause depression- neurotrophic factor (BDNF). BDNF is required for neu- like behaviors. Their studies suggest that downstream ronal development, survival, and plasticity (4, 5). Brain BDNF signaling via Gαi1 and Gαi3 is necessary not imaging has shown volumetric changes in limbic regions only for sustaining the well-being of neurons but also in depression attributed either to reduced numbers of for normal antidepressive behaviors (11). So, how glia and pyramidal neurons or to their reduced cell body does neurotrophin signaling inside the cell specifically size, accompanied by atrophy of pyramidal neuron api- contribute to the regulation of mental functioning? cal dendrites and decreases in neurogenesis in dentate Neurotrophins, a unique family of polypeptide gyrus (6). -
Nadder: a Scale-Space Approach for the 3D Analysis of Neuronal Traces
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.01.127035; this version posted December 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. nAdder: A scale-space approach for the 3D analysis of neuronal traces Minh Son Phan1, Katherine Matho2, Emmanuel Beaurepaire1, Jean Livet2, and Anatole Chessel1 1Laboratory for Optics and Biosciences, CNRS, INSERM, Ecole Polytechnique, IP Paris, Palaiseau, France 2Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 rue Moreau, F-75012 Paris, France December 4, 2020 1 ABSTRACT 2 Tridimensional microscopy and algorithms for automated segmentation and tracing are revolutionizing 3 neuroscience through the generation of growing libraries of neuron reconstructions. Innovative 4 computational methods are needed to analyze these neural traces. In particular, means to analyse the 5 geometric properties of traced neurites along their trajectory have been lacking. Here, we propose 6 a local tridimensional (3D) scale metric derived from differential geometry, which is the distance 7 in micrometers along which a curve is fully 3D as opposed to being embedded in a 2D plane or 1D 8 line. We apply this metric to various neuronal traces ranging from single neurons to whole brain data. 9 By providing a local readout of the geometric complexity, it offers a new mean of describing and 10 comparing axonal and dendritic arbors from individual neurons or the behavior of axonal projections 11 in different brain regions. -
Astrocyte-Derived Thrombospondin Induces Cortical Synaptogenesis in a Sex-Specific Manner
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.04.425242; this version posted January 5, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Astrocyte-derived thrombospondin induces cortical synaptogenesis in a sex-specific manner. Anna Mazur1, Ean H. Bills1, Brandon J. Henderson1, and W. Christopher Risher1* 1Department of Biomedical Sciences, Joan C. Edwards School of Medicine at Marshall University, Huntington, WV, USA *Corresponding author Abstract The regulation of synaptic connectivity in the brain is vital to proper functioning and development of the central nervous system (CNS). Formation of neural networks in the CNS has been shown to be heavily influenced by astrocytes, which secrete factors, including thrombospondin (TSP) family proteins, that promote synaptogenesis. However, whether this process is different between males and females has not been thoroughly investigated. In this study, we found that cortical neurons purified from newborn male rats showed a significantly more robust synaptogenic response compared to female-derived cells when exposed to factors secreted from astrocytes. This difference was driven largely by the neuronal response to TSP2, which increased synapses in male neurons while showing no effect on female neurons. Blockade of endogenous 17β-estradiol production with letrozole normalized the TSP response between male and female cells, indicating a level of regulation by estrogen signaling. Our results suggest that TSP-induced synaptogenesis is critical for the development of male but not female cortical synapses, contributing to sex differences in astrocyte-mediated synaptic connectivity. Introduction Neurons form complex arrangements throughout the central nervous system (CNS) that form the basis of our ability to think, move, learn, and remember. -
Automated Sorting of Neuronal Trees in Fluorescent Images of Neuronal
Automated sorting of neuronal trees in fluorescent images of neuronal networks using NeuroTreeTracer Cihan Kayasandik1,+, Pooran Negi1,+, Fernanda Laezza2, Manos Papadakis1, and Demetrio Labate1,* 1University of Houston, Department of Mathematics, Houston, Texas, United States of America 2University of Texas Medical Branch, Department of Pharmacology and Toxicology, Galveston, Texas, United States of America *corresponding author: [email protected] +these authors contributed equally to this work ABSTRACT Fluorescence confocal microscopy has become increasingly more important in neuroscience due to its applications in image- based screening and profiling of neurons. Multispectral confocal imaging is useful to simultaneously probe for distribution of multiple analytes over networks of neurons. However, current automated image analysis algorithms are not designed to extract single-neuron arbors in images where neurons are not separated, hampering the ability map fluorescence signals at the single cell level. To overcome this limitation, we introduce NeuroTreeTracer – a novel image processing framework aimed at automatically extracting and sorting single-neuron traces in fluorescent images of multicellular neuronal networks. This method applies directional multiscale filters for automated segmentation of neurons and soma detection, and includes a novel tracing routine that sorts neuronal trees in the image by resolving network connectivity even when neurites appear to intersect. By extracting each neuronal tree, NeuroTreetracer enables to automatically -
The Interplay Between Neurons and Glia in Synapse Development And
Available online at www.sciencedirect.com ScienceDirect The interplay between neurons and glia in synapse development and plasticity Jeff A Stogsdill and Cagla Eroglu In the brain, the formation of complex neuronal networks and regulate distinct aspects of synaptic development and amenable to experience-dependent remodeling is complicated circuit connectivity. by the diversity of neurons and synapse types. The establishment of a functional brain depends not only on The intricate communication between neurons and glia neurons, but also non-neuronal glial cells. Glia are in and their cooperative roles in synapse formation are now continuous bi-directional communication with neurons to direct coming to light due in large part to advances in genetic the formation and refinement of synaptic connectivity. This and imaging tools. This article will examine the progress article reviews important findings, which uncovered cellular made in our understanding of the role of mammalian and molecular aspects of the neuron–glia cross-talk that perisynaptic glia (astrocytes and microglia) in synapse govern the formation and remodeling of synapses and circuits. development, maturation, and plasticity since the previ- In vivo evidence demonstrating the critical interplay between ous Current Opinion article [1]. An integration of past and neurons and glia will be the major focus. Additional attention new findings of glial control of synapse development and will be given to how aberrant communication between neurons plasticity is tabulated in Box 1. and glia may contribute to neural pathologies. Address Glia control the formation of synaptic circuits Department of Cell Biology, Duke University Medical Center, Durham, In the CNS, glial cells are in tight association with NC 27710, USA synapses in all brain regions [2]. -
Methods to Investigate the Structure and Connectivity of the Nervous System
University of Massachusetts Medical School eScholarship@UMMS GSBS Student Publications Graduate School of Biomedical Sciences 2017-02-16 Methods to investigate the structure and connectivity of the nervous system Donghyung Lee California Institute of Technology Et al. Let us know how access to this document benefits ou.y Follow this and additional works at: https://escholarship.umassmed.edu/gsbs_sp Part of the Neuroscience and Neurobiology Commons Repository Citation Lee D, Huang T, De La Cruz A, Callejas A, Lois C. (2017). Methods to investigate the structure and connectivity of the nervous system. GSBS Student Publications. https://doi.org/10.1080/ 19336934.2017.1295189. Retrieved from https://escholarship.umassmed.edu/gsbs_sp/2000 Creative Commons License This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 4.0 License. This material is brought to you by eScholarship@UMMS. It has been accepted for inclusion in GSBS Student Publications by an authorized administrator of eScholarship@UMMS. For more information, please contact [email protected]. Fly ISSN: 1933-6934 (Print) 1933-6942 (Online) Journal homepage: http://www.tandfonline.com/loi/kfly20 Methods to investigate the structure and connectivity of the nervous system Donghyung Lee, Ting-Hao Huang, Aubrie De La Cruz, Antuca Callejas & Carlos Lois To cite this article: Donghyung Lee, Ting-Hao Huang, Aubrie De La Cruz, Antuca Callejas & Carlos Lois (2017): Methods to investigate the structure and connectivity of the nervous system, Fly, DOI: 10.1080/19336934.2017.1295189 To link to this article: http://dx.doi.org/10.1080/19336934.2017.1295189 © 2017 The Author(s). Published with license by Taylor & Francis© Donghyung Lee, Ting-Hao Huang, Aubrie De La Cruz, Antuca Callejas, and Carlos Lois Accepted author version posted online: 16 Feb 2017. -
Coordinating Partners with Multiple Functions
REVIEWS Neuromuscular synaptogenesis: coordinating partners with multiple functions Houssam Darabid, Anna P. Perez-Gonzalez and Richard Robitaille Abstract | The formation of highly efficient and reliable synapses at the neuromuscular junction (NMJ) relies on dynamic molecular interactions. Studies of the development and maturation of the NMJ have focused on events that are dependent on synaptic activity and that require the coordinated actions of nerve- and muscle-derived molecules with different targets and effects. More recently, perisynaptic Schwann cells — the glial cells at NMJs — have become an important focus of research. These glia concomitantly contribute to pre- and postsynaptic maturation while undergoing maturation themselves. Thus, an intricate ‘danse à trois’ regulates the maturation of the NMJ to form a highly efficient communication unit, in which fine glial processes lie in close proximity to a highly concentrated population of postsynaptic receptors and perfectly aligned presynaptic release sites. Neuromuscular junction During embryonic development in vertebrates, motor understood. Presynaptic maturation was previously (NMJ). A unitary functional neuron axons grow long distances from the spinal cord to assumed to be controlled by molecules that are released structure composed of a single reach their distal targets1. They form the link between the by the postsynaptic apparatus, and vice versa5–8. However, axon terminal innervating a CNS and the rest of the body — particularly the striated recent advances in molecular analysis (for instance, muscle fibre. The presynaptic terminal is covered by muscles that effect voluntary movements. The direction of improvements in fusion proteins and cell-specific gene specialized glial cells called this long-distance axonal travel towards specific muscles deletion) have revealed a more complex scenario, wherein perisynaptic Schwann cells. -
Extraction of Protein Profiles from Primary Neurons Using Active
Journal of Neuroscience Methods 225 (2014) 1–12 Contents lists available at ScienceDirect Journal of Neuroscience Methods jo urnal homepage: www.elsevier.com/locate/jneumeth Extraction of protein profiles from primary neurons using active ଝ contour models and wavelets a,∗ b a a Danny Misiak , Stefan Posch , Marcell Lederer , Claudia Reinke , a b Stefan Hüttelmaier , Birgit Möller a Institute of Molecular Medicine, Martin Luther University Halle-Wittenberg, Heinrich-Damerow-Str. 1, 06120 Halle, Germany b Institute of Computer Science, Martin Luther University Halle-Wittenberg, Von-Seckendorff-Platz 1, 06099 Halle, Germany h i g h l i g h t s • Extraction of neuron areas using active contours with a new distance based energy. • Location of structural neuron parts by a wavelet based approach. • Automatic extraction of spatial and quantitative data about distributions of proteins. • Extraction of various morphological parameters, in a fully automated manner. • Extraction of a distinctive profile for the Zipcode binding protein (ZBP1/IGF2BP1). a r t i c l e i n f o a b s t r a c t Article history: The function of complex networks in the nervous system relies on the proper formation of neuronal Received 26 October 2013 contacts and their remodeling. To decipher the molecular mechanisms underlying these processes, it is Received in revised form essential to establish unbiased automated tools allowing the correlation of neurite morphology and the 18 December 2013 subcellular distribution of molecules by quantitative means. Accepted 19 December 2013 We developed NeuronAnalyzer2D, a plugin for ImageJ, which allows the extraction of neuronal cell morphologies from two dimensional high resolution images, and in particular their correlation with Keywords: protein profiles determined by indirect immunostaining of primary neurons. -
Glial Control of Synaptogenesis and Postsynaptic Structural Proteins
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Cell 292 Ma, L., Li, J., Qu, L., Hager, J., Chen, Z., Zhao, H., and Deng, X.W. colleagues compared the effects of astrocyte feeding (2001). Plant Cell 13, 2589–2607. layers to astrocyte-conditioned medium (ACM) on syn- Martínez-García, J.F., Huq, E., and Quail, P.H. (2000). Science 288, apse formation in RGC cultures. ACM was found to in- 859–863. duce morphologically normal synapses at levels similar Matsushita, T., Mochizuki, N., and Nagatani, A. (2003). Nature 424, to astrocyte feeding layers, and they used this ACM- 571–574. induced increase in RGC synapse number as an assay Nagy, F., and Schäfer, E. (2002). Annu. Rev. Plant Biol. 53, 329–355. to track down the synaptogenic molecule present in Ryu, J.S., Kim, J.I., Kunkel, T., Kim, B.C., Cho, D.S., Hong, S.H., fractionated ACM. The ACM synaptogenic activity co- Kim, S.H., Piñas-Fernández, A., Kim, Y., Alonso, J.M., et al. (2005). Cell 120, this issue, 395–406. purified with fractions >300 kDa and bound heparin. This led the authors to focus on thrombospondins Seo, H.S., Watanabe, E., Tokutomi, S., Nagatani, A., and Chua, N.H. (2004). Genes Dev. 18, 617–622. (TSPs), which are normally expressed in glia and pre- Tepperman, J.M., Zhu, T., Chang, H.S., Wang, X., and Quail, P.H. sent in ACM. TSPs are also oligomeric extracellular ma- (2001). Proc. Natl. Acad. Sci. USA 98, 9437–9442. -
Functional Consequences of Synapse Remodeling Following Astrocyte-Specific Regulation of Ephrin-B1 in the Adult Hippocampus
5710 • The Journal of Neuroscience, June 20, 2018 • 38(25):5710–5726 Cellular/Molecular Functional Consequences of Synapse Remodeling Following Astrocyte-Specific Regulation of Ephrin-B1 in the Adult Hippocampus Jordan Koeppen,1,2* XAmanda Q. Nguyen,1,3* Angeliki M. Nikolakopoulou,1 XMichael Garcia,1 XSandy Hanna,1 Simone Woodruff,1 Zoe Figueroa,1 XAndre Obenaus,4 and XIryna M. Ethell1,2,3 1Division of Biomedical Sciences, University of California Riverside School of Medicine, Riverside, California 92521, 2Cell, Molecular, and Developmental Biology Graduate program, University of California Riverside, California, 92521, 3Neuroscience Graduate Program, University of California Riverside, Riverside, California 92521, and 4Department of Pediatrics, University of California Irvine, Irvine, California 92350 Astrocyte-derived factors can control synapse formation and functions, making astrocytes an attractive target for regulating neuronal circuits and associated behaviors. Abnormal astrocyte-neuronal interactions are also implicated in neurodevelopmental disorders and neurodegenera- tive diseases associated with impaired learning and memory. However, little is known about astrocyte-mediated mechanisms that regulate learning and memory. Here, we propose astrocytic ephrin-B1 as a regulator of synaptogenesis in adult hippocampus and mouse learning behaviors. We found that astrocyte-specific ablation of ephrin-B1 in male mice triggers an increase in the density of immature dendritic spines and excitatory synaptic sites in the adult CA1 hippocampus. However, the prevalence of immature dendritic spines is associated with decreased evoked postsynaptic firing responses in CA1 pyramidal neurons, suggesting impaired maturation of these newly formed and potentially silent synapses or increased excitatory drive on the inhibitory neurons resulting in the overall decreased postsynaptic firing. -
Specific Labeling of Synaptic Schwann Cells Reveals Unique Cellular And
RESEARCH ARTICLE Specific labeling of synaptic schwann cells reveals unique cellular and molecular features Ryan Castro1,2,3, Thomas Taetzsch1,2, Sydney K Vaughan1,2, Kerilyn Godbe4, John Chappell4, Robert E Settlage5, Gregorio Valdez1,2,6* 1Department of Molecular Biology, Cellular Biology, and Biochemistry, Brown University, Providence, United States; 2Center for Translational Neuroscience, Robert J. and Nancy D. Carney Institute for Brain Science and Brown Institute for Translational Science, Brown University, Providence, United States; 3Neuroscience Graduate Program, Brown University, Providence, United States; 4Fralin Biomedical Research Institute at Virginia Tech Carilion, Roanoke, United States; 5Department of Advanced Research Computing, Virginia Tech, Blacksburg, United States; 6Department of Neurology, Warren Alpert Medical School of Brown University, Providence, United States Abstract Perisynaptic Schwann cells (PSCs) are specialized, non-myelinating, synaptic glia of the neuromuscular junction (NMJ), that participate in synapse development, function, maintenance, and repair. The study of PSCs has relied on an anatomy-based approach, as the identities of cell-specific PSC molecular markers have remained elusive. This limited approach has precluded our ability to isolate and genetically manipulate PSCs in a cell specific manner. We have identified neuron-glia antigen 2 (NG2) as a unique molecular marker of S100b+ PSCs in skeletal muscle. NG2 is expressed in Schwann cells already associated with the NMJ, indicating that it is a marker of differentiated PSCs. Using a newly generated transgenic mouse in which PSCs are specifically labeled, we show that PSCs have a unique molecular signature that includes genes known to play critical roles in *For correspondence: PSCs and synapses. These findings will serve as a springboard for revealing drivers of PSC [email protected] differentiation and function.