Titan Introduction and Timeline Bronson Messer
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Petaflops for the People
PETAFLOPS SPOTLIGHT: NERSC housands of researchers have used facilities of the Advanced T Scientific Computing Research (ASCR) program and its EXTREME-WEATHER Department of Energy (DOE) computing predecessors over the past four decades. Their studies of hurricanes, earthquakes, NUMBER-CRUNCHING green-energy technologies and many other basic and applied Certain problems lend themselves to solution by science problems have, in turn, benefited millions of people. computers. Take hurricanes, for instance: They’re They owe it mainly to the capacity provided by the National too big, too dangerous and perhaps too expensive Energy Research Scientific Computing Center (NERSC), the Oak to understand fully without a supercomputer. Ridge Leadership Computing Facility (OLCF) and the Argonne Leadership Computing Facility (ALCF). Using decades of global climate data in a grid comprised of 25-kilometer squares, researchers in These ASCR installations have helped train the advanced Berkeley Lab’s Computational Research Division scientific workforce of the future. Postdoctoral scientists, captured the formation of hurricanes and typhoons graduate students and early-career researchers have worked and the extreme waves that they generate. Those there, learning to configure the world’s most sophisticated same models, when run at resolutions of about supercomputers for their own various and wide-ranging projects. 100 kilometers, missed the tropical cyclones and Cutting-edge supercomputing, once the purview of a small resulting waves, up to 30 meters high. group of experts, has trickled down to the benefit of thousands of investigators in the broader scientific community. Their findings, published inGeophysical Research Letters, demonstrated the importance of running Today, NERSC, at Lawrence Berkeley National Laboratory; climate models at higher resolution. -
Technical Manual for a Coupled Sea-Ice/Ocean Circulation Model (Version 3)
OCS Study MMS 2009-062 Technical Manual for a Coupled Sea-Ice/Ocean Circulation Model (Version 3) Katherine S. Hedström Arctic Region Supercomputing Center University of Alaska Fairbanks U.S. Department of the Interior Minerals Management Service Anchorage, Alaska Contract No. M07PC13368 OCS Study MMS 2009-062 Technical Manual for a Coupled Sea-Ice/Ocean Circulation Model (Version 3) Katherine S. Hedström Arctic Region Supercomputing Center University of Alaska Fairbanks Nov 2009 This study was funded by the Alaska Outer Continental Shelf Region of the Minerals Manage- ment Service, U.S. Department of the Interior, Anchorage, Alaska, through Contract M07PC13368 with Rutgers University, Institute of Marine and Coastal Sciences. The opinions, findings, conclusions, or recommendations expressed in this report or product are those of the authors and do not necessarily reflect the views of the U.S. Department of the Interior, nor does mention of trade names or commercial products constitute endorsement or recommenda- tion for use by the Federal Government. This document was prepared with LATEX xfig, and inkscape. Acknowledgments The ROMS model is descended from the SPEM and SCRUM models, but has been entirely rewritten by Sasha Shchepetkin, Hernan Arango and John Warner, with many, many other con- tributors. I am indebted to every one of them for their hard work. Bill Hibler first came up with the viscous-plastic rheology we are using. Paul Budgell has rewritten the dynamic sea-ice model, improving the solution procedure and making the water- stress term implicit in time, then changing it again to use the elastic-viscous-plastic rheology of Hunke and Dukowicz. -
Workload Management and Application Placement for the Cray Linux Environment™
TMTM Workload Management and Application Placement for the Cray Linux Environment™ S–2496–4101 © 2010–2012 Cray Inc. All Rights Reserved. This document or parts thereof may not be reproduced in any form unless permitted by contract or by written permission of Cray Inc. U.S. GOVERNMENT RESTRICTED RIGHTS NOTICE The Computer Software is delivered as "Commercial Computer Software" as defined in DFARS 48 CFR 252.227-7014. All Computer Software and Computer Software Documentation acquired by or for the U.S. Government is provided with Restricted Rights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7014, as applicable. Technical Data acquired by or for the U.S. Government, if any, is provided with Limited Rights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7013, as applicable. Cray and Sonexion are federally registered trademarks and Active Manager, Cascade, Cray Apprentice2, Cray Apprentice2 Desktop, Cray C++ Compiling System, Cray CX, Cray CX1, Cray CX1-iWS, Cray CX1-LC, Cray CX1000, Cray CX1000-C, Cray CX1000-G, Cray CX1000-S, Cray CX1000-SC, Cray CX1000-SM, Cray CX1000-HN, Cray Fortran Compiler, Cray Linux Environment, Cray SHMEM, Cray X1, Cray X1E, Cray X2, Cray XD1, Cray XE, Cray XEm, Cray XE5, Cray XE5m, Cray XE6, Cray XE6m, Cray XK6, Cray XK6m, Cray XMT, Cray XR1, Cray XT, Cray XTm, Cray XT3, Cray XT4, Cray XT5, Cray XT5h, Cray XT5m, Cray XT6, Cray XT6m, CrayDoc, CrayPort, CRInform, ECOphlex, LibSci, NodeKARE, RapidArray, The Way to Better Science, Threadstorm, uRiKA, UNICOS/lc, and YarcData are trademarks of Cray Inc. -
Introducing the Cray XMT
Introducing the Cray XMT Petr Konecny Cray Inc. 411 First Avenue South Seattle, Washington 98104 [email protected] May 5th 2007 Abstract Cray recently introduced the Cray XMT system, which builds on the parallel architecture of the Cray XT3 system and the multithreaded architecture of the Cray MTA systems with a Cray-designed multithreaded processor. This paper highlights not only the details of the architecture, but also the application areas it is best suited for. 1 Introduction past two decades the processor speeds have increased several orders of magnitude while memory speeds Cray XMT is the third generation multithreaded ar- increased only slightly. Despite this disparity the chitecture built by Cray Inc. The two previous gen- performance of most applications continued to grow. erations, the MTA-1 and MTA-2 systems [2], were This has been achieved in large part by exploiting lo- fully custom systems that were expensive to man- cality in memory access patterns and by introducing ufacture and support. Developed under code name hierarchical memory systems. The benefit of these Eldorado [4], the Cray XMT uses many parts built multilevel caches is twofold: they lower average la- for other commercial system, thereby, significantly tency of memory operations and they amortize com- lowering system costs while maintaining the sim- munication overheads by transferring larger blocks ple programming model of the two previous genera- of data. tions. Reusing commodity components significantly The presence of multiple levels of caches forces improves price/performance ratio over the two pre- programmers to write code that exploits them, if vious generations. they want to achieve good performance of their ap- Cray XMT leverages the development of the Red plication. -
Cray XT and Cray XE Y Y System Overview
Crayyy XT and Cray XE System Overview Customer Documentation and Training Overview Topics • System Overview – Cabinets, Chassis, and Blades – Compute and Service Nodes – Components of a Node Opteron Processor SeaStar ASIC • Portals API Design Gemini ASIC • System Networks • Interconnection Topologies 10/18/2010 Cray Private 2 Cray XT System 10/18/2010 Cray Private 3 System Overview Y Z GigE X 10 GigE GigE SMW Fibre Channels RAID Subsystem Compute node Login node Network node Boot /Syslog/Database nodes 10/18/2010 Cray Private I/O and Metadata nodes 4 Cabinet – The cabinet contains three chassis, a blower for cooling, a power distribution unit (PDU), a control system (CRMS), and the compute and service blades (modules) – All components of the system are air cooled A blower in the bottom of the cabinet cools the blades within the cabinet • Other rack-mounted devices within the cabinet have their own internal fans for cooling – The PDU is located behind the blower in the back of the cabinet 10/18/2010 Cray Private 5 Liquid Cooled Cabinets Heat exchanger Heat exchanger (XT5-HE LC only) (LC cabinets only) 48Vdc flexible Cage 2 buses Cage 2 Cage 1 Cage 1 Cage VRMs Cage 0 Cage 0 backplane assembly Cage ID controller Interconnect 01234567 Heat exchanger network cable Cage inlet (LC cabinets only) connection air temp sensor Airflow Heat exchanger (slot 3 rail) conditioner 48Vdc shelf 3 (XT5-HE LC only) 48Vdc shelf 2 L1 controller 48Vdc shelf 1 Blower speed controller (VFD) Blooewer PDU line filter XDP temperature XDP interface & humidity sensor -
Cray XT3/XT4 Software
Cray XT3/XT4 Software: Status and Plans David Wallace Cray Inc ABSTRACT: : This presentation will discuss the current status of software and development plans for the CRAY XT3 and XT4 systems. A review of major milestones and accomplishments over the past year will be presented. KEYWORDS: ‘Cray XT3’, ‘Cray XT4’, software, CNL, ‘compute node OS’, Catamount/Qk processors, support for larger system configurations (five 1. Introduction rows and larger), a new version of SuSE Linux and CFS Lustre as well as a host of other new features and fixes to The theme for CUG 2007 is "New Frontiers ," which software deficiencies. Much has been done in terms of reflects upon how the many improvements in High new software releases and adding support for new Performance Computing have significantly facilitated hardware. advances in Technology and Engineering. UNICOS/lc is 2.1 UNICOS/lc Releases moving to new frontiers as well. The first section of this paper will provide a perspective of the major software The last twelve months have been very busy with milestones and accomplishments over the past twelve respect to software releases. Two major releases months. The second section will discuss the current status (UNICOS/lc 1.4 and 1.5) and almost weekly updates have of the software with respect to development, releases and provided a steady stream of new features, enhancements support. The paper will conclude with a view of future and fixes to our customers. UNICOS/lc 1.4 was released software plans. for general availability in June 2006. A total of fourteen minor releases have been released since last June. -
The Gemini Network
The Gemini Network Rev 1.1 Cray Inc. © 2010 Cray Inc. All Rights Reserved. Unpublished Proprietary Information. This unpublished work is protected by trade secret, copyright and other laws. Except as permitted by contract or express written permission of Cray Inc., no part of this work or its content may be used, reproduced or disclosed in any form. Technical Data acquired by or for the U.S. Government, if any, is provided with Limited Rights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7013, as applicable. Autotasking, Cray, Cray Channels, Cray Y-MP, UNICOS and UNICOS/mk are federally registered trademarks and Active Manager, CCI, CCMT, CF77, CF90, CFT, CFT2, CFT77, ConCurrent Maintenance Tools, COS, Cray Ada, Cray Animation Theater, Cray APP, Cray Apprentice2, Cray C90, Cray C90D, Cray C++ Compiling System, Cray CF90, Cray EL, Cray Fortran Compiler, Cray J90, Cray J90se, Cray J916, Cray J932, Cray MTA, Cray MTA-2, Cray MTX, Cray NQS, Cray Research, Cray SeaStar, Cray SeaStar2, Cray SeaStar2+, Cray SHMEM, Cray S-MP, Cray SSD-T90, Cray SuperCluster, Cray SV1, Cray SV1ex, Cray SX-5, Cray SX-6, Cray T90, Cray T916, Cray T932, Cray T3D, Cray T3D MC, Cray T3D MCA, Cray T3D SC, Cray T3E, Cray Threadstorm, Cray UNICOS, Cray X1, Cray X1E, Cray X2, Cray XD1, Cray X-MP, Cray XMS, Cray XMT, Cray XR1, Cray XT, Cray XT3, Cray XT4, Cray XT5, Cray XT5h, Cray Y-MP EL, Cray-1, Cray-2, Cray-3, CrayDoc, CrayLink, Cray-MP, CrayPacs, CrayPat, CrayPort, Cray/REELlibrarian, CraySoft, CrayTutor, CRInform, CRI/TurboKiva, CSIM, CVT, Delivering the power…, Dgauss, Docview, EMDS, GigaRing, HEXAR, HSX, IOS, ISP/Superlink, LibSci, MPP Apprentice, ND Series Network Disk Array, Network Queuing Environment, Network Queuing Tools, OLNET, RapidArray, RQS, SEGLDR, SMARTE, SSD, SUPERLINK, System Maintenance and Remote Testing Environment, Trusted UNICOS, TurboKiva, UNICOS MAX, UNICOS/lc, and UNICOS/mp are trademarks of Cray Inc. -
Understanding the Cray X1 System
NAS Technical Report NAS-04-014 December 2004 Understanding the Cray X1 System Samson Cheung, Ph.D. Halcyon Systems Inc. NASA Advanced Supercomputing Division NASA Ames Research Center [email protected] Abstract This paper helps the reader understand the characteristics of the Cray X1 vector supercomputer system, and provides hints and information to enable the reader to port codes to the system. It provides a comparison between the basic performance of the X1 platform and other platforms available at NASA Ames Research Center. A set of codes, solving the Laplacian equation with different parallel paradigms, is used to understand some features of the X1 compiler. An example code from the NAS Parallel Benchmarks is used to demonstrate performance optimization on the X1 platform.* Key Words: Cray X1, High Performance Computing, MPI, OpenMP Introduction The Cray vector supercomputer, which dominated in the ‘80s and early ‘90s, was replaced by clusters of shared-memory processors (SMPs) in the mid-‘90s. Universities across the U.S. use commodity components to build Beowulf systems to achieve high peak speed [1]. The supercomputer center at NASA Ames Research Center had over 2,000 CPUs of SGI Origin ccNUMA machines in 2003. This technology path provides excellent price/performance ratio; however, many application software programs (e.g., Earth Science, validated vectorized CFD codes) sustain only a small faction of the peak without a major rewrite of the code. The Japanese Earth Simulator demonstrated the low price/performance ratio by using vector processors connected to high-bandwidth memory and high-performance networking [2]. Several scientific applications sustain a large fraction of its 40 TFLOPS/sec peak performance. -
Overview of the Next Generation Cray XMT
Overview of the Next Generation Cray XMT Andrew Kopser and Dennis Vollrath, Cray Inc. ABSTRACT: The next generation of Cray’s multithreaded supercomputer is architecturally very similar to the Cray XMT, but the memory system has been improved significantly and other features have been added to improve reliability, productivity, and performance. This paper begins with a review of the Cray XMT followed by an overview of the next generation Cray XMT implementation. Finally, the new features of the next generation XMT are described in more detail and preliminary performance results are given. KEYWORDS: Cray, XMT, multithreaded, multithreading, architecture 1. Introduction The primary objective when designing the next Cray XMT generation Cray XMT was to increase the DIMM The Cray XMT is a scalable multithreaded computer bandwidth and capacity. It is built using the Cray XT5 built with the Cray Threadstorm processor. This custom infrastructure with DDR2 technology. This change processor is designed to exploit parallelism that is only increases each node’s memory capacity by a factor of available through its unique ability to rapidly context- eight and DIMM bandwidth by a factor of three. switch among many independent hardware execution streams. The Cray XMT excels at large graph problems Reliability and productivity were important goals for that are poorly served by conventional cache-based the next generation Cray XMT as well. A source of microprocessors. frustration, especially for new users of the current Cray XMT, is the issue of hot spots. Since all memory is The Cray XMT is a shared memory machine. The programming model assumes a flat, globally accessible, globally accessible and the application has access to shared address space. -
Pubtex Output 2011.12.12:1229
TM Using Cray Performance Analysis Tools S–2376–53 © 2006–2011 Cray Inc. All Rights Reserved. This document or parts thereof may not be reproduced in any form unless permitted by contract or by written permission of Cray Inc. U.S. GOVERNMENT RESTRICTED RIGHTS NOTICE The Computer Software is delivered as "Commercial Computer Software" as defined in DFARS 48 CFR 252.227-7014. All Computer Software and Computer Software Documentation acquired by or for the U.S. Government is provided with Restricted Rights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7014, as applicable. Technical Data acquired by or for the U.S. Government, if any, is provided with Limited Rights. Use, duplication or disclosure by the U.S. Government is subject to the restrictions described in FAR 48 CFR 52.227-14 or DFARS 48 CFR 252.227-7013, as applicable. Cray, LibSci, and PathScale are federally registered trademarks and Active Manager, Cray Apprentice2, Cray Apprentice2 Desktop, Cray C++ Compiling System, Cray CX, Cray CX1, Cray CX1-iWS, Cray CX1-LC, Cray CX1000, Cray CX1000-C, Cray CX1000-G, Cray CX1000-S, Cray CX1000-SC, Cray CX1000-SM, Cray CX1000-HN, Cray Fortran Compiler, Cray Linux Environment, Cray SHMEM, Cray X1, Cray X1E, Cray X2, Cray XD1, Cray XE, Cray XEm, Cray XE5, Cray XE5m, Cray XE6, Cray XE6m, Cray XK6, Cray XMT, Cray XR1, Cray XT, Cray XTm, Cray XT3, Cray XT4, Cray XT5, Cray XT5h, Cray XT5m, Cray XT6, Cray XT6m, CrayDoc, CrayPort, CRInform, ECOphlex, Gemini, Libsci, NodeKARE, RapidArray, SeaStar, SeaStar2, SeaStar2+, Sonexion, The Way to Better Science, Threadstorm, uRiKA, and UNICOS/lc are trademarks of Cray Inc. -
Performance Evaluation of the Cray X1 Distributed Shared Memory Architecture
Performance Evaluation of the Cray X1 Distributed Shared Memory Architecture Tom Dunigan Jeffrey Vetter Pat Worley Oak Ridge National Laboratory Highlights º Motivation – Current application requirements exceed contemporary computing capabilities – Cray X1 offered a ‘new’ system balance º Cray X1 Architecture Overview – Nodes architecture – Distributed shared memory interconnect – Programmer’s view º Performance Evaluation – Microbenchmarks pinpoint differences across architectures – Several applications show marked improvement ORNL/JV 2 1 ORNL is Focused on Diverse, Grand Challenge Scientific Applications SciDAC Genomes Astrophysics to Life Nanophase Materials SciDAC Climate Application characteristics vary dramatically! SciDAC Fusion SciDAC Chemistry ORNL/JV 3 Climate Case Study: CCSM Simulation Resource Projections Science drivers: regional detail / comprehensive model Machine and Data Requirements 1000 750 340.1 250 154 100 113.3 70.3 51.5 Tflops 31.9 23.4 Tbytes 14.5 10 10.6 6.6 4.8 3 2.2 1 1 dyn veg interactivestrat chem biogeochem eddy resolvcloud resolv trop chemistry Years CCSM Coupled Model Resolution Configurations: 2002/2003 2008/2009 Atmosphere 230kmL26 30kmL96 • Blue line represents total national resource dedicated Land 50km 5km to CCSM simulations and expected future growth to Ocean 100kmL40 10kmL80 meet demands of increased model complexity Sea Ice 100km 10km • Red line show s data volume generated for each Model years/day 8 8 National Resource 3 750 century simulated (dedicated TF) Storage (TB/century) 1 250 At 2002-3 scientific complexity, a century simulation required 12.5 days. ORNL/JV 4 2 Engaged in Technical Assessment of Diverse Architectures for our Applications º Cray X1 Cray X1 º IBM SP3, p655, p690 º Intel Itanium, Xeon º SGI Altix º IBM POWER5 º FPGAs IBM Federation º Planned assessments – Cray X1e – Cray X2 – Cray Red Storm – IBM BlueGene/L – Optical processors – Processors-in-memory – Multithreading – Array processors, etc. -
Use Style: Paper Title
Titan: Early experience with the Cray XK6 at Oak Ridge National Laboratory Arthur S. Bland, Jack C. Wells, Otis E. Messer, Oscar R. Hernandez, James H. Rogers National Center for Computational Sciences Oak Ridge National Laboratory Oak Ridge, Tennessee, 37831, USA [blandas, wellsjc, bronson, oscar, jrogers, at ORNL.GOV] Abstract— In 2011, Oak Ridge National Laboratory began an turbines, building a virtual nuclear reactor to increase power upgrade to Jaguar to convert it from a Cray XT5 to a Cray output and longevity of nuclear power plants, modeling the XK6 system named Titan. This is being accomplished in two ITER prototype fusion reactor, predicting impacts from phases. The first phase, completed in early 2012, replaced all of climate change, earthquakes and tsunamis, and improving the XT5 compute blades with XK6 compute blades, and the aerodynamics of vehicles to increase fuel economy. replaced the SeaStar interconnect with Cray’s new Gemini Access to Titan is available through several allocation network. Each compute node is configured with an AMD programs. More information about access is available Opteron™ 6274 16-core processors and 32 gigabytes of DDR3- through the OLCF web site at: 1600 SDRAM. The system aggregate includes 600 terabytes of http://www.olcf.ornl.gov/support/getting-started/. system memory. In addition, the first phase includes 960 The OLCF worked with Cray to design Titan to be an NVIDIA X2090 Tesla processors. In the second phase, ORNL will add NVIDIA’s next generation Tesla processors to exceptionally well-balanced system for modeling and increase the combined system peak performance to over 20 simulation at the highest end of high-performance PFLOPS.