Self-Archiving of Research Output
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Version 2.2 Structured Psychosocial Stress and Therapeutic Intervention: Toward a Realistic Biological Medicine
Version 2.2 Structured Psychosocial Stress and Therapeutic Intervention: Toward a Realistic Biological Medicine Rodrick Wallace, Ph.D. The New York State Psychiatric Institute ∗ June 5, 2003 Abstract Using generalized ‘language of thought’ arguments appropriate to interacting cognitive modules, we explore how disease states can inter- act with medical treatment, including, but not limited to, drug ther- apy. The feedback between treatment and response creates a kind of idiotypic ‘hall of mirrors’ generating a pattern of ‘efficacy’, ‘treatment failure’, and ‘adverse reactions’ which will, from a Rate Distortion per- spective, embody a distorted image of externally-imposed structured psychosocial stress. This analysis, unlike current pharmacogenetics, does not either reify ‘race’ or blame the victim by using genetic struc- ture to place the locus-of-control within a group or individual. Rather, it suggests that a comparatively simple series of questions to identify longitudinal and cross-sectional stressors may provide more effective guidance for specification of individual medical therapy than compli- cated genotyping strategies of dubious meaning. These latter are likely ∗Address correspondence to R. Wallace, PISCS Inc., 549 W. 123 St., Suite 16F, New York, NY, 10027. Telephone (212) 865-4766, [email protected]. Affiliation is for identification only. This material has been submitted for publication and is protected by copyright. 1 to be both very expensive and utterly blind to the impact of struc- tured psychosocial stress – a euphemism -
The Oa-Jes Project
Vol 7, No 3 (2011)7 1 Vol 7, No 3 (2011) Table of Contents Events 1 News & Notices 2-3 Articles OPEN MINDS: An interview with members of the FinnOA working group 4-5 Turid Hedlund OPEN MINDS: An interview with Ian Watson, Bifröst University in Iceland 6-7 Solveig Thorsteinsdottir OPEN MINDS - Interviews with Lithuanian politicians and 8-14 famous researchers about Open Access Emilija Banionyte, Ausra Vaskeviciene, Gintare Tautkeviciene The Mega-journals are coming! 15-16 Jan Erik Frantsvåg Exploring Handheld Devices and Digital Learning: the iPad project 17-20 at Oslo University College Trude Eikebrokk, Bettina Grödem Knutsen, Jimi Thaule "Carrot or stick, incentives or mandates, or both" 21-24 Tania Ström We have won the argument about Open Access –now we have to 25-28 bring things together and make it work! Lars Björnshauge Events 2011:3 The 6th Munin conference 22-23 November posters, which resulted in contributions on various 2011 – Enhancing publications topics, within the issue of scientific publishing. The most important annual conference on scientific The day after the conference, Thursday 24. publishing in Norway, the Munin Conference, is November, the University of Tromsø will host a staged each year in November by the University of national open access workshop day, primarily for Tromsø Library. This year’s conference is scheduled to people working with open archives and open access take place Tuesday 22. and Wednesday 23. publishing in Norway. This may also become an November. A key theme this year is “enhancing annual event. publications”, meaning any kind of extra services surrounding the publishing of scientific articles. -
Stevan Harnad 10 the Open Research
Stevan Harnad To appear in: In: Jacobs, N., Eds. Open Access: Key Strategic, Technical and Economic Aspects. Chandos. Note, final versions of figures and captions still to come, but their content and positions will be as shown here. The reference list will also be pruned, to cite or remove uncited works The Open Research Web: A Preview of the Optimal and the Inevitable Nigel Shadbolt, Tim Brody, Les Carr, and Stevan Harnad University of Southampton Most of this book has been about the past and the present of Open Access (OA). Let’s now take a brief glimpse at its future, for it is already within reach and almost within sight: Once the optimal and inevitable outcome for the research literature has became actual , namely, all 2.5 million of the annual articles appearing in the planet’s 24,000 peer-reviewed research journals are freely accessible online to all would-be users, then: (1) All their OAI metadata and full-texts will be harvested and reverse-indexed by services such as Google, OAIster (and new OAI/OA services), making it possible to search all and only the research literature in all disciplines using Boolean full-text search (and, or not, etc.). (2) Boolean full-text search will be augmented by Artificial Intelligence (AI) based text-analysis and classification techniques superior to human pre- classification, infinitely less time-consuming, and applied automatically to the entire OA full-text corpus. (3) Articles and portions of articles will also be classified, tagged and annotated in terms of “ontologies” (lists of the kinds of things of interest in a subject domain, their characteristics, and their relations to other things) as provided by authors, users, other authorities, or automatic AI techniques, creating the OA research subset of the “semantic web” (Berners-Lee et al. -
Object Persistence and Availability in Digital Libraries Michael L
Old Dominion University ODU Digital Commons Computer Science Faculty Publications Computer Science 2002 Object Persistence and Availability in Digital Libraries Michael L. Nelson Old Dominion University B. Danette Allen Follow this and additional works at: https://digitalcommons.odu.edu/computerscience_fac_pubs Part of the Computer Sciences Commons, and the Digital Communications and Networking Commons Repository Citation Nelson, Michael L. and Allen, B. Danette, "Object Persistence and Availability in Digital Libraries" (2002). Computer Science Faculty Publications. 2. https://digitalcommons.odu.edu/computerscience_fac_pubs/2 Original Publication Citation Nelson, M.L., & Allen, B.D. (2002). Object persistence and availability in digital libraries. D-Lib Magazine, 8(1), 1-24. doi: 10.1045/ january2002-nelson This Article is brought to you for free and open access by the Computer Science at ODU Digital Commons. It has been accepted for inclusion in Computer Science Faculty Publications by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. Object Persistence and Availability in Digital Libraries Search | Back Issues | Author Index | Title Index | Contents D-Lib Magazine January 2002 Volume 8 Number 1 ISSN 1082-9873 Object Persistence and Availability in Digital Libraries Michael L. Nelson, B. Danette Allen NASA Langley Research Center Hampton, VA 23681 {m.l.nelson, b.d.allen}@nasa.gov Abstract We have studied object persistence and availability of 1,000 digital library (DL) objects. Twenty World Wide Web accessible DLs were chosen and from each DL, 50 objects were chosen at random. A script checked the availability of each object three times a week for just over 1 year for a total of 161 data samples. -
Citebase Search: Autonomous Citation Database for E-Print Archives
Citebase Search: Autonomous Citation Database for e-Print Archives Citebase Search: Autonomous Citation Database for e-Print Archives Tim Brody <[email protected]> Intelligence, Agents, Multimedia Group University of Southampton Abstract Citebase is a culmination of the Opcit Project and the Open Archives Initiative. The Opcit Project's aim to citation-link arXiv.org was coupled with the interoperability of the OAI to develop a cross-archive search engine with the ability to harvest, parse, and link research paper bibliographies. These citation links create a classic citation database which is used to generate citation analysis and navigation over the e- print literature. Citebase is now linked from arXiv.org, alongside SLAC/SPIRES, and is integrated with e- Prints.org repositories using Paracite. Introduction Citebase Search is a Web service that harvests research articles from online, e- print archives (both pre- and post- peer-reviewed articles). Citebase parses references from the full-text, citation-linking those references to the cited articles. This is the basis for a classical citation database. Citebase was first announced in December 2001 [1], although it was not until Citebase was integrated in August 2002 with arXiv.org that any sizeable number of users started to use Citebase. As an add-on to arXiv.org, arXiv provides links from its abstract pages to the equivalent abstract page in Citebase. Citebase currently draws most of its traffic from users following these links, without them then going onto use Citebase’s own search service (see Figure 1). In the first section I will introduce the motivation behind Citebase, section 2 gives some of the structure of the system, section 3 introduces the service as seen by the user and section 4 gives an example of some of the data mining that can be performed on Citebase’s database. -
Language Beyond Our Grasp: What Mirror Neurons Can, and Cannot, Do for Language Evolution
LANGUAGE BEYOND OUR GRASP: WHAT MIRROR NEURONS CAN, AND CANNOT, DO FOR LANGUAGE EVOLUTION James R Hurford, Language Evolution and Computation Research Unit, Linguistics Department, University of Edinburgh (Note: To appear in Kimbrough Oller, D., U. Griebel and K. Plunkett (eds.) (2002) The Evolution of Communication Systems: A Comparative Approach. The Vienna Series in Theoretical Biology, MIT Press, Cambridge MA. [in press]. In case of any discrepancy with the eventually printed version, the printed version will be the `authorized' version.) ... before trying to construct scenarios of language origin and evolution based on MNS we must take care to analyse properly the nature of MNS itself. (Stamenov, 2002) [MNS = mirror neurons or mirror neuron system] And, I would add, we must also take care to analyse properly the nature of language itself. Several recent papers (Rizzolatti and Arbib, 1998; Arbib, 2001; Arbib, 2002) suggest that the discovery of mirror neurons helps us to understand in some more detail how human language evolved. The present paper tries to explore and continue further the development of ideas in these papers(1). Two main issues raised by mirror neurons are addressed, in Sections 1 and 2, respectively. Section 1 aims to correct a possibly widespread misunderstanding of the significance of mirror neurons, as reflected in the following journalistic passages. USC's Michael A. Arbib, Ph.D., says ``the neurons, located in the premotor cortex just in front of the motor cortex, are a mechanism for recognizing the meaning of actions made by others ... For communication to succeed, both the individual sending a message and the individual receiving it must recognize the significance of the sender's signal. -
Version 4 New Mathematical Foundations for AI and Alife: Are the Necessary Conditions for Animal Consciousness Sufficient for the Design of Intelligent Machines?
Version 4 New mathematical foundations for AI and Alife: Are the necessary conditions for animal consciousness sufficient for the design of intelligent machines? Rodrick Wallace, Ph.D. The New York State Psychiatric Institute∗ May 23, 2006 Abstract matter... We may simply not be seeing some fun- damental mathematical description of what is go- Rodney Brooks’ call for ‘new mathematics’ to revitalize the ing on in living systems and so be leaving it out of disciplines of artificial intelligence and artificial life can be our AI and Alife models... there might be some or- answered by adaptation of what Adams has called ‘the in- ganizing principle, some mathematical notion that formational turn in philosophy’, aided by the novel perspec- we need in order to understand how they work... tives that program gives regarding empirical studies of ani- What form might this mathematical notion take? It mal cognition and consciousness. Going backward from the need not be disruptive of our current view of living necessary conditions communication theory imposes on ani- things, but could be as non-threatening as the notion mal cognition and consciousness to sufficient conditions for of computation, just different from anything anyone machine design is, however, an extraordinarily difficult engi- has currently thought of. Perhaps other mathemat- neering task. The most likely use of the first generations of ical principles or notions, necessary to build good conscious machines will be to model the various forms of psy- explanations of the details of evolution, cognition, chopathology, since we have little or no understanding of how consciousness or learning, will be discovered or in- consciousness is stabilized in humans or other animals. -
Open Access Self-Archiving: an Author Study
Open access self-archiving: An author study May 2005 Alma Swan and Sheridan Brown Key Perspectives Limited 48 Old Coach Road, Playing Place, TRURO, Cornwall, TR3 6ET, UK (Registered Office) Tel. +44 (0)1392 879702 www.keyperspectives.co.uk www.keyperspectives.com CONTENTS Executive summary 1. Introduction 1 2. The respondents 7 3. Open access journals 10 4. The use of research information 13 4.1 Ease of access to work-related information 13 4.2 Age of articles most commonly used 13 4.3 Respondents’ publishing activities 17 4.3.1 Number of articles published 17 4.3.2 Respondents’ citation records 20 4.3.3 Publishing objectives 23 4.4 Searching for information 23 4.4.1 Research articles in closed archives 24 4.4.2 Research articles in open archives 24 5. Self-archiving 26 5.1 Self-archiving experience 26 5.1.1 The level of self-archiving activity 26 5.1.2 Length of experience of self-archiving 38 5.2 Awareness of self-archiving as a means to providing open access 43 5.3 Motivation issues 49 5.4 The mechanics of self-archiving 51 5.4.1 Who has actually done the depositing? 51 5.4.2 How difficult is it to self-archive? 51 5.4.3 How long does it take to self-archive? 53 5.4.4 Preservation of archived articles 55 5.4.5 Copyright 56 5.4.6 Digital objects being deposited in open archives 57 5.4.7 Mandating self-archiving? 62 6. Discussion 69 References 74 Appendices: Appendix 1: Reasons for publishing in open access journals, by subject area (table) 77 Appendix 2: Reasons for publishing in open access journals, by subject area (verbatim responses) 79 Appendix 3: Reasons for not publishing in open access journals, by subject area (table) 83 Appendix 4: Reasons for not publishing in open access journals, by subject area (verbatim responses) 86 Appendix 5: Ease of access to research articles needed for work, by subject area 93 Appendix 6: Reasons for publishing research results (verbatim responses) 94 Appendix 7: Use of closed archives: results broken down by subject area 97 Tables 1. -
Faculty Self-Archiving Practices: a Case Study Denise Troll Covey Principal Librarian for Special Projects, Carnegie Mellon
Working Paper Faculty Self-Archiving Practices: A Case Study Denise Troll Covey Principal Librarian for Special Projects, Carnegie Mellon July 2008 Abstract. Faculty web pages were examined to learn about self-archiving practice at Carnegie Mellon. More faculty are self-archiving their work and more work is being self-archived than expected. However, the distribution of self-archiving activity across the disciplines is not as expected. More faculty self-archive journal articles than other publications, but more conference papers are self-archived than journal articles. Many faculty who self-archive have self-archived fewer than ten publications. A small number of faculty has self-archived most of the work that is available open access from faculty web pages. Significant differences in faculty behavior within departments cannot be explained by disciplinary culture. Introduction and Background The success of initiatives to incorporate free-to-read versions of scholarly publications in the digital library hinges on the participation of faculty authors. Authors must retain the right to self-archive their work or publish in open access journals. Despite the availability of publisher self-archiving policies and research confirming the impact advantage of open access in many disciplines,1 there is a broad gap between what could be available open access and what is available open access.2 Though profound differences in disciplinary culture suggest that providing open access to scholarly work might not inevitably become standard practice in all fields,3 a narrowing of the gap between opportunity and practice is likely, given educational initiatives to improve faculty understanding of access issues and copyrights, better tools and institutional support, and new public policies. -
Creating Institutional E-Print Repositories Stephen Pinfield
CORE Metadata, citation and similar papers at core.ac.uk Provided by Nottingham ePrints Creating institutional e-print repositories Stephen Pinfield Published in: Serials, 15, 3, November 2002, pp. 261-264. This article aims to address three questions: • What are ‘institutional e-print repositories’? • Why create them? • How can they be created? What are institutional e-print repositories? ‘E-prints’ are electronic copies of research papers or similar research output. They might be ‘pre-prints’ (pre-refereed papers), ‘post-prints’ (post-refereed papers), conference papers, book chapters, reports, or related kinds of material. Online collections of such material are sometimes called e-print ‘archives’. The term ‘archive’ is however ambiguous. For many it implies a sophisticated system of the curation and preservation which may not necessarily be in place for e-prints. Some people therefore prefer to use the more neutral ‘repository’. E-print repositories are usually made freely available on the internet. The principle of so-called ‘open access’ is one supported by many advocates of e-prints1. The term ‘open’ in the context of e-prints does not always refer to access however. The Open Archives Initiative uses the term in a more technical way to indicate system interoperability2. The OAI has produced a protocol which allows archives to expose information about their contents on the internet in the form of structured metadata which can be automatically collected up and placed in searchable databases. Any e- print repository which is OAI-compliant can therefore be a part of an interoperable network of databases, the metadata from which can be easily searched by users. -
Metadata for Harvesting: the Open Archives Initiative, and How to Find Things on the Web', the Electronic Library, Vol
Citation for published version: Hunter, P & Guy, M 2004, 'Metadata for Harvesting: The Open Archives Initiative, and how to find things on the Web', The Electronic Library, vol. 22, no. 2, pp. 168-174. https://doi.org/10.1108/02640470410533434 DOI: 10.1108/02640470410533434 Publication date: 2004 Document Version Peer reviewed version Link to publication http://dx.doi.org/10.1108/02640470410533434 University of Bath Alternative formats If you require this document in an alternative format, please contact: [email protected] General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 02. Oct. 2021 Metadata for Harvesting: the Open Archives Initiative, and how to find things on the Web. Philip Hunter and Marieke Guy. Abstract The OAI Protocol for Metadata Harvesting offers the prospect of resource discovery tools far beyond what is currently available to users of the Web via standard search engines. This article illustrates how existing information about available resources can be repurposed fairly easily and cheaply using standard tools. However the publishing of this information throws up a number of practical and philosophical questions which have to be addressed by projects and institutions. Keywords Open Archives Initiative, Metadata, Harvesting, Resource Discovery, ePrints, Dublin Core. -
OAI-PMH for Absolute Beginners a Non-Technical Introduction
Tutorial 1 OAI and OAI-PMH for absolute beginners a non-technical introduction Monica Duke UKOLN, University of Bath, United Kingdom [email protected] Philip Hunter UKOLN, University of Bath, United Kingdom [email protected] Overview of the morning ¾ Overview and Introductions ¾ Part I History and overview ¾ Short break (10.30 am) ¾ Quiz ¾ Part II Main Ideas of the OAI-PMH ¾ Part III Implementation issues CERN Workshop on Innovations in Scholarly Communications (OAI3) 12th-14th Febuary 2004 Acknowledgements ¾ These slides have a long history! ¾ Many of them have been kindly donated by (taken from!) Herbert Van de Sompel Carl Lagoze Michael Nelson Simeon Warner Andy Powell Pete Cliff Uwe Muller (and others probably!) CERN Workshop on Innovations in Scholarly Communications (OAI3) 12th-14th Febuary 2004 Tutorial 1 OAI and OAI-PMH for absolute beginners An introduction to the Open Archives Initiative and the Protocol for Metadata Harvesting Part I: History and basic concepts The Open Archives Approach ¾ Facilitates access to heterogenous web- accessible material ¾ A low-barrier interoperability solution ¾ Based on repositories supporting Metadata sharing Publishing Archiving ¾ Arose out of the e-print community ¾ 2 main features Open Archives Initiative OAI Protocol for Metadata Harvesting (OAI-PMH) CERN Workshop on Innovations in Scholarly Communications (OAI3) 12th-14th Febuary 2004 The Open Archives Initiative ¾ Mission "The Open Archives Initiative develops and promotes interoperability standards that aim to facilitate the efficient