Ataxin-1 Regulates B Cell Function and the Severity of Autoimmune Experimental Encephalomyelitis
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Establishment of a Novel Human CIC-DUX4 Sarcoma Cell Line, Kitra
www.nature.com/scientificreports Corrected: Author Correction OPEN Establishment of a novel human CIC-DUX4 sarcoma cell line, Kitra-SRS, with autocrine IGF-1R activation and metastatic potential to the lungs Sho Nakai1, Shutaro Yamada2, Hidetatsu Outani1, Takaaki Nakai3, Naohiro Yasuda1, Hirokazu Mae1, Yoshinori Imura4, Toru Wakamatsu4, Hironari Tamiya4, Takaaki Tanaka4, Kenichiro Hamada1, Akiyoshi Tani5, Akira Myoui1, Nobuhito Araki6, Takafumi Ueda7, Hideki Yoshikawa1, Satoshi Takenaka1* & Norifumi Naka1,4 Approximately 60–70% of EWSR1-negative small blue round cell sarcomas harbour a rearrangement of CIC, most commonly CIC-DUX4. CIC-DUX4 sarcoma (CDS) is an aggressive and often fatal high-grade sarcoma appearing predominantly in children and young adults. Although cell lines and their xenograft models are essential tools for basic research and development of antitumour drugs, few cell lines currently exist for CDS. We successfully established a novel human CDS cell line designated Kitra-SRS and developed orthotopic tumour xenografts in nude mice. The CIC-DUX4 fusion gene in Kitra-SRS cells was generated by t(12;19) complex chromosomal rearrangements with an insertion of a chromosome segment including a DUX4 pseudogene component. Kitra-SRS xenografts were histologically similar to the original tumour and exhibited metastatic potential to the lungs. Kitra-SRS cells displayed autocrine activation of the insulin-like growth factor 1 (IGF-1)/IGF-1 receptor (IGF-1R) pathway. Accordingly, treatment with the IGF-1R inhibitor, linsitinib, attenuated Kitra-SRS cell growth and IGF-1-induced activation of IGF-1R/AKT signalling both in vitro and in vivo. Furthermore, upon screening 1134 FDA- approved drugs, the responses of Kitra-SRS cells to anticancer drugs appeared to refect those of the primary tumour. -
Loss of CIC Promotes Mitotic Dysregulation and Chromosome Segregation Defects
bioRxiv preprint doi: https://doi.org/10.1101/533323; this version posted January 29, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Loss of CIC promotes mitotic dysregulation and chromosome segregation defects. Suganthi Chittaranjan1, Jungeun Song1, Susanna Y. Chan1, Stephen Dongsoo Lee1, Shiekh Tanveer Ahmad2,3,4, William Brothers1, Richard D. Corbett1, Alessia Gagliardi1, Amy Lum5, Annie Moradian6, Stephen Pleasance1, Robin Coope1, J Gregory Cairncross2,7, Stephen Yip5,8, Emma Laks5,8, Samuel A.J.R. Aparicio5,8, Jennifer A. Chan2,3,4, Christopher S. Hughes1, Gregg B. Morin1,9, Veronique G. LeBlanc1, Marco A. Marra1,9* Affiliations 1 Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada 2 Arnie Charbonneau Cancer Institute, University of Calgary, Calgary, Canada 3 Department of Pathology & Laboratory Medicine, University of Calgary, Calgary, Canada 4 Alberta Children’s Hospital Research Institute, University of Calgary, Calgary, Canada 5 Department of Molecular Oncology, BC Cancer, Vancouver, Canada 6 California Institute of Technology, Pasadena, USA 7 Department of Clinical Neurosciences, University of Calgary, Calgary, Canada 8 Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada 9 Department of Medical Genetics, University of British Columbia, Vancouver, Canada Corresponding author Marco A. Marra Genome Sciences Centre BC Cancer 675 West 10th Avenue, Vancouver, BC Canada V5Z 1L3 E-mail: [email protected] 604-675-8162 1 bioRxiv preprint doi: https://doi.org/10.1101/533323; this version posted January 29, 2019. -
Negative MAPK-ERK Regulation Sustains CIC-DUX4 Oncoprotein Expression in Undifferentiated Sarcoma
Negative MAPK-ERK regulation sustains CIC-DUX4 oncoprotein expression in undifferentiated sarcoma Yone Kawe Lina, Wei Wua,b, Rovingaile Kriska Poncea, Ji Won Kima, and Ross A. Okimotoa,b,c,1 aDivision of Hematology and Oncology, University of California, San Francisco, CA 94143; bHelen Diller Comprehensive Cancer Center, University of California, San Francisco, CA 94115; and cDepartment of Medicine, University of California, San Francisco, CA 94143 Edited by Harold Varmus, Weill Cornell Medical College, New York, NY, and approved July 15, 2020 (received for review May 12, 2020) Transcription factor fusions (TFFs) are present in ∼30% of soft- CIC-DUX4 bearing cell line, NCC_CDS_X1 (6, 13). Using tissue sarcomas. TFFs are not readily “druggable” in a direct phar- model-based analysis for ChIP-seq (MACS) (14, 15), we identi- macologic manner and thus have proven difficult to target in the fied 260 CIC-DUX4 binding peaks present at a high level of clinic. A prime example is the CIC-DUX4 oncoprotein, which fuses significance (P < 0.05 and false discovery rate [FDR] <0.01) Capicua (CIC) to the double homeobox 4 gene, DUX4. CIC-DUX4 (Fig. 1A). Eighty-two percent of the binding peaks were located sarcoma is a highly aggressive and lethal subtype of small round in either intergenic (43%) or intronic (39%) sites, and 12% were cell sarcoma found predominantly in adolescents and young within 3 kb of the transcriptional start site (TSS), defined as the adults. To identify new therapeutic targets in CIC-DUX4 sarcoma, promoter region (Fig. 1B). Among the genes identified were we performed chromatin immunoprecipitation sequencing analy- known CIC-DUX4 targets including ETV1, ETV4, and ETV5 sis using patient-derived CIC-DUX4 cells. -
The Tumor Suppressor CIC Directly Regulates MAPK Pathway Genes Via Histone Deacetylation Simon Weissmann1,2, Paul A
Published OnlineFirst May 29, 2018; DOI: 10.1158/0008-5472.CAN-18-0342 Cancer Genome and Epigenome Research The Tumor Suppressor CIC Directly Regulates MAPK Pathway Genes via Histone Deacetylation Simon Weissmann1,2, Paul A. Cloos1,2, Simone Sidoli2,3, Ole N. Jensen2,3, Steven Pollard4, and Kristian Helin1,2,5 Abstract Oligodendrogliomas are brain tumors accounting for approximately 10% of all central nervous system can- Low MAPK signaling High MAPK signaling cers. CIC is a transcription factor that is mutated in most RTKs patients with oligodendrogliomas; these mutations are believed to be a key oncogenic event in such cancers. MEK Analysis of the Drosophila melanogaster ortholog of ERK SIN3 CIC, Capicua, indicates that CIC loss phenocopies CIC HDAC activation of the EGFR/RAS/MAPK pathway, and HMG C-term studies in mammalian cells have demonstrated a role SIN3 CIC HDAC for CIC in repressing the transcription of the PEA3 HMG C-term Ac Ac subfamily of ETS transcription factors. Here, we address Ac Ac the mechanism by which CIC represses transcription and assess the functional consequences of CIC inacti- vation. Genome-wide binding patterns of CIC in several cell types revealed that CIC target genes were enriched ETV, DUSP, CCND1/2, SHC3,... for MAPK effector genes involved in cell-cycle regulation Normal Astrocytoma and proliferation. CIC binding to target genes was Glioblastoma multiforme abolished by high MAPK activity, which led to their 1p/19q deletion CIC-Mutants transcriptional activation. CIC interacted with the SIN3 SIN3 deacetylation complex and, based on our results, we SIN3 CIC suggest that CIC functions as a transcriptional repressor HDAC HDAC HMG C-term through the recruitment of histone deacetylases. -
ETV4 and ETV5 Drive Synovial Sarcoma Through Cell Cycle and DUX4 Embryonic Pathway Control
The Journal of Clinical Investigation RESEARCH ARTICLE ETV4 and ETV5 drive synovial sarcoma through cell cycle and DUX4 embryonic pathway control Joanna DeSalvo,1,2 Yuguang Ban,2,3 Luyuan Li,1,2 Xiaodian Sun,2 Zhijie Jiang,4 Darcy A. Kerr,5 Mahsa Khanlari,5 Maria Boulina,6 Mario R. Capecchi,7 Juha M. Partanen,8 Lin Chen,9 Tadashi Kondo,10 David M. Ornitz,11 Jonathan C. Trent,1,2 and Josiane E. Eid1,2 1Department of Medicine, Division of Medical Oncology, 2Sylvester Comprehensive Cancer Center, and 3Department of Public Health Sciences, University of Miami Miller School of Medicine, Miami, Florida, USA. 4University of Miami Center for Computational Science, Coral Gables, Florida, USA. 5Department of Pathology and 6Analytical Imaging Core Facility, Diabetes Research Institute, University of Miami Miller School of Medicine, Miami, Florida, USA. 7Department of Human Genetics, Howard Hughes Medical Institute, University of Utah, Salt Lake City, Utah, USA. 8Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland. 9Center of Bone Metabolism and Repair, Research Institute of Surgery, Daping Hospital, Army Medical University, Chongqing, China. 10Division of Rare Cancer Research, National Cancer Center Research Institute, Tokyo, Japan. 11Department of Developmental Biology, Washington University School of Medicine, St. Louis, Missouri, USA. Synovial sarcoma is an aggressive malignancy with no effective treatments for patients with metastasis. The synovial sarcoma fusion SS18-SSX, which recruits the SWI/SNF-BAF chromatin remodeling and polycomb repressive complexes, results in epigenetic activation of FGF receptor (FGFR) signaling. In genetic FGFR-knockout models, culture, and xenograft synovial sarcoma models treated with the FGFR inhibitor BGJ398, we show that FGFR1, FGFR2, and FGFR3 were crucial for tumor growth. -
C-Src Phosphorylates and Inhibits the Function of the CIC Tumor
Published OnlineFirst February 6, 2020; DOI: 10.1158/1541-7786.MCR-18-1370 MOLECULAR CANCER RESEARCH | SIGNAL TRANSDUCTION AND FUNCTIONAL IMAGING c-Src Phosphorylates and Inhibits the Function of the CIC Tumor Suppressor Protein Severa Bunda1, Pardeep Heir1, Annie Si Cong Li1, Yasin Mamatjan1, Gelareh Zadeh1,2,3, and Kenneth Aldape1,4 ABSTRACT ◥ Capicua (CIC) is a transcriptional repressor that counteracts Src family kinase inhibitor, dasatinib, which prevents EGF- activation of genes in response to receptor tyrosine kinase (RTK)/ mediated tyrosine phosphorylation of CIC and attenuates ele- Ras/ERK signaling. Following activation of RTK, ERK enters the vated ETV1 and ETV5 levels, reduces viability of GBM cells and nucleus and serine-phosphorylates CIC, releasing it from its glioma stem cells (GSC), but not of their control cells with targets to permit gene expression. We recently showed that ERK undetectable c-Src activity. In fact, GBM cells and GSC expres- triggers ubiquitin-mediated degradation of CIC in glioblastoma sing the tyrosine-defective CIC mutant (Y1455F) lose sensitivity (GBM). In this study, we examined whether another important to dasatinib, further endorsing the effect of dasatinib on Src- downstream effector of RTK/EGFR, the non-RTK c-Src, affects mediated tyrosine phosphorylation of CIC. These findings elu- CIC repressor function in GBM. We found that c-Src binds and cidate important mechanisms of CIC regulation and provide the tyrosine-phosphorylates CIC on residue 1455 to promote nuclear rationale to target c-Src alongside ERK pathway inhibitors as a export of CIC. On the other hand, CIC-mutant allele (CIC- way to fully restore CIC tumor suppressor function in neoplasms Y1455F), that escapes c-Src–mediated tyrosine phosphorylation, such as GBM. -
ATAXIN-1 Interacts with the Repressor Capicua in Its Native Complex to Cause SCA1 Neuropathology
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector ATAXIN-1 Interacts with the Repressor Capicua in Its Native Complex to Cause SCA1 Neuropathology Yung C. Lam,1,9 Aaron B. Bowman,2,8,9 Paymaan Jafar-Nejad,2 Janghoo Lim,2 Ronald Richman,4 John D. Fryer,4 Eric D. Hyun,3 Lisa A. Duvick,5,6,7 Harry T. Orr,5,6,7 Juan Botas,2 and Huda Y. Zoghbi1,2,3,4,* 1 Department of Neuroscience 2 Department of Molecular and Human Genetics 3 Program in Developmental Biology 4 Howard Hughes Medical Institute Baylor College of Medicine, Houston, TX 77030, USA 5 Department of Laboratory Medicine and Pathology 6 Department of Biochemistry 7 Institute of Human Genetics University of Minnesota, Minneapolis, MN 55455, USA 8 Present address: Department of Neurology, Kennedy Center for Research on Human Development, Vanderbilt University, Nashville, TN 37232, USA. 9 These authors contributed equally to this work. *Contact: [email protected] DOI 10.1016/j.cell.2006.11.038 SUMMARY triplet repeat causes a dominantly inherited neurodegen- erative disease. Despite broad expression of polyglut- Spinocerebellar ataxia type 1 (SCA1) is one of amine proteins, distinct subsets of neurons are vulnerable several neurodegenerative diseases caused in each disease. Genetic studies have shown that expan- by expansion of a polyglutamine tract in the sion of the polyglutamine tract confers a toxic gain of func- disease protein, in this case, ATAXIN-1 tion (Duyao et al., 1995; Ikeda et al., 2005; Matilla et al., (ATXN1). -
CIC Protein Instability Contributes to Tumorigenesis in Glioblastoma
ARTICLE https://doi.org/10.1038/s41467-018-08087-9 OPEN CIC protein instability contributes to tumorigenesis in glioblastoma Severa Bunda1, Pardeep Heir1, Julie Metcalf1, Annie Si Cong Li 1, Sameer Agnihotri1,7, Stefan Pusch 5,6, Mamatjan Yasin1, Mira Li 1, Kelly Burrell1, Sheila Mansouri1, Olivia Singh 1, Mark Wilson1, Amir Alamsahebpour1, Romina Nejad1, Bethany Choi 1, David Kim1, Andreas von Deimling5,6, Gelareh Zadeh1,2,3 & Kenneth Aldape1,4 1234567890():,; Capicua (CIC) is a transcriptional repressor that counteracts activation of genes downstream of receptor tyrosine kinase (RTK)/Ras/ERK signaling. It is well-established that tumorigen- esis, especially in glioblastoma (GBM), is attributed to hyperactive RTK/Ras/ERK signaling. While CIC is mutated in other tumors, here we show that CIC has a tumor suppressive function in GBM through an alternative mechanism. We find that CIC protein levels are negligible in GBM due to continuous proteasome-mediated degradation, which is mediated by the E3 ligase PJA1 and show that this occurs through binding of CIC to its DNA target and phosphorylation on residue S173. PJA1 knockdown increased CIC stability and extended survival using in-vivo models of GBM. Deletion of the ERK binding site resulted in stabilization of CIC and increased therapeutic efficacy of ERK inhibition in GBM models. Our results provide a rationale to target CIC degradation in Ras/ERK-driven tumors, including GBM, to increase efficacy of ERK inhibitors. 1 MacFeeters Hamilton Centre for Neuro-Oncology Research, Princess Margaret Cancer Centre, Toronto, ON M5G 2C1, Canada. 2 Division of Neurosurgery, Toronto Western Hospital, Toronto, ON M5G 2C1, Canada. -
Inactivation of Capicua Drives Cancer Metastasis
UCSF UC San Francisco Previously Published Works Title Inactivation of Capicua drives cancer metastasis. Permalink https://escholarship.org/uc/item/7zb7n7c5 Journal Nature genetics, 49(1) ISSN 1061-4036 Authors Okimoto, Ross A Breitenbuecher, Frank Olivas, Victor R et al. Publication Date 2017 DOI 10.1038/ng.3728 Peer reviewed eScholarship.org Powered by the California Digital Library University of California HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Nat Genet Manuscript Author . Author manuscript; Manuscript Author available in PMC 2017 May 21. Published in final edited form as: Nat Genet. 2017 January ; 49(1): 87–96. doi:10.1038/ng.3728. Inactivation of Capicua drives cancer metastasis Ross A. Okimoto1,2, Frank Breitenbuecher3, Victor R. Olivas1, Wei Wu1,2, Beatrice Gini1,2, Matan Hofree4,5, Saurabh Asthana2, Gorjan Hrustanovic2, Jennifer Flanagan2, Asmin Tulpule1,2, Collin M. Blakely1,2, Henry J. Haringsma6, Andrew D. Simmons6, Kyle Gowen7, James Suh7, Vincent A. Miller7, Siraj Ali7, Martin Schuler3,8, and Trever G. Bivona1,2 1Department of Medicine, University of California, San Francisco, San Francisco, CA 2Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA 3Department of Medical Oncology, West German Cancer Center, University Hospital Essen, Essen, Germany 4Broad Institute of MIT and Harvard, Cambridge, Massachusetts 5Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 6Clovis Oncology Inc., San Francisco, California 7Foundation Medicine, Cambridge, Massachusetts 8German Cancer Consortium (DKTK), Heidelberg, Germany Abstract Metastasis is the leading cause of death in lung cancer patients, yet the molecular effectors underlying tumor dissemination remain poorly defined. Through development of an in vivo spontaneous lung cancer metastasis model, we show that the developmentally-regulated transcriptional repressor Capicua (CIC) suppresses invasion and metastasis. -
High-Density Array Comparative Genomic Hybridization Detects Novel Copy Number Alterations in Gastric Adenocarcinoma
ANTICANCER RESEARCH 34: 6405-6416 (2014) High-density Array Comparative Genomic Hybridization Detects Novel Copy Number Alterations in Gastric Adenocarcinoma ALINE DAMASCENO SEABRA1,2*, TAÍSSA MAÍRA THOMAZ ARAÚJO1,2*, FERNANDO AUGUSTO RODRIGUES MELLO JUNIOR1,2, DIEGO DI FELIPE ÁVILA ALCÂNTARA1,2, AMANDA PAIVA DE BARROS1,2, PAULO PIMENTEL DE ASSUMPÇÃO2, RAQUEL CARVALHO MONTENEGRO1,2, ADRIANA COSTA GUIMARÃES1,2, SAMIA DEMACHKI2, ROMMEL MARIO RODRÍGUEZ BURBANO1,2 and ANDRÉ SALIM KHAYAT1,2 1Human Cytogenetics Laboratory and 2Oncology Research Center, Federal University of Pará, Belém Pará, Brazil Abstract. Aim: To investigate frequent quantitative alterations gastric cancer is the second most frequent cancer in men and of intestinal-type gastric adenocarcinoma. Materials and the third in women (4). The state of Pará has a high Methods: We analyzed genome-wide DNA copy numbers of 22 incidence of gastric adenocarcinoma and this disease is a samples and using CytoScan® HD Array. Results: We identified public health problem, since mortality rates are above the 22 gene alterations that to the best of our knowledge have not Brazilian average (5). been described for gastric cancer, including of v-erb-b2 avian This tumor can be classified into two histological types, erythroblastic leukemia viral oncogene homolog 4 (ERBB4), intestinal and diffuse, according to Laurén (4, 6, 7). The SRY (sex determining region Y)-box 6 (SOX6), regulator of intestinal type predominates in high-risk areas, such as telomere elongation helicase 1 (RTEL1) and UDP- Brazil, and arises from precursor lesions, whereas the diffuse Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 type has a similar distribution in high- and low-risk areas and (B4GALT5). -
CIC-DUX4 Oncoprotein Drives Sarcoma Metastasis and Tumorigenesis Via Distinct Regulatory Programs
CIC-DUX4 oncoprotein drives sarcoma metastasis and tumorigenesis via distinct regulatory programs Ross A. Okimoto, … , Tadashi Kondo, Trever G. Bivona J Clin Invest. 2019;129(8):3401-3406. https://doi.org/10.1172/JCI126366. Concise Communication Oncology Transcription factor fusion genes create oncoproteins that drive oncogenesis and represent challenging therapeutic targets. Understanding the molecular targets by which such fusion oncoproteins promote malignancy offers an approach to develop rational treatment strategies to improve clinical outcomes. Capicua–double homeobox 4 (CIC-DUX4) is a transcription factor fusion oncoprotein that defines certain undifferentiated round cell sarcomas with high metastatic propensity and poor clinical outcomes. The molecular targets regulated by the CIC-DUX4 oncoprotein that promote this aggressive malignancy remain largely unknown. We demonstrated that increased expression of ETS variant 4 (ETV4) and cyclin E1 (CCNE1) occurs via neomorphic, direct effects of CIC-DUX4 and drives tumor metastasis and survival, respectively. We uncovered a molecular dependence on the CCNE-CDK2 cell cycle complex that renders CIC-DUX4– expressing tumors sensitive to inhibition of the CCNE-CDK2 complex, suggesting a therapeutic strategy for CIC-DUX4– expressing tumors. Our findings highlight a paradigm of functional diversification of transcriptional repertoires controlled by a genetically aberrant transcriptional regulator, with therapeutic implications. Find the latest version: https://jci.me/126366/pdf The Journal of Clinical Investigation CONCISE COMMUNICATION CIC-DUX4 oncoprotein drives sarcoma metastasis and tumorigenesis via distinct regulatory programs Ross A. Okimoto,1,2 Wei Wu,1 Shigeki Nanjo,1 Victor Olivas,1 Yone K. Lin,1 Rovingaile Kriska Ponce,1 Rieko Oyama,3 Tadashi Kondo,3 and Trever G. -
Twenty-Five Years Since the Identification of the First SCA Gene
https://doi.org/10.1590/0004-282X20180080 VIEWS AND REVIEWS Twenty-five years since the identification of the first SCA gene: history, clinical features and perspectives for SCA1 Vinte e cinco anos desde a identificação do primeiro gene das SCAs: história, aspectos clínicos e perspectivas para a SCA1 Carlos Roberto Martins Junior1, Fabrício Castro de Borba1, Alberto Rolim Muro Martinez1, Thiago Junqueira Ribeiro de Rezende1, Iscia Lopes Cendes2, José Luiz Pedroso3, Orlando Graziani Povoas Barsottini3, Marcondes Cavalcante França Júnior1 ABSTRACT Spinocerebellar ataxias (SCA) are a clinically and genetically heterogeneous group of monogenic diseases that share ataxia and autosomal dominant inheritance as the core features. An important proportion of SCAs are caused by CAG trinucleotide repeat expansions in the coding region of different genes. In addition to genetic heterogeneity, clinical features transcend motor symptoms, including cognitive, electrophysiological and imaging aspects. Despite all the progress in the past 25 years, the mechanisms that determine how neuronal death is mediated by these unstable expansions are still unclear. The aim of this article is to review, from an historical point of view, the first CAG-related ataxia to be genetically described: SCA 1. Keywords: Spinocerebellar ataxias; ataxin 1; spinocerebellar degenerations. RESUMO As ataxias espinocerebelares (SCA) são um grupo clínico e geneticamente heterogêneo de doenças monogênicas que compartilham ataxia e herança autossômica dominante como características principais. Uma proporção importante de SCAs é causada por expansões de repetição de trinucleotídeos CAG na região de codificação de diferentes genes. Além da heterogeneidade genética, os aspectos clínicos transcendem os sintomas motores, incluindo aspectos cognitivos, eletrofisiológicos e de imagem.