Amplitude Modulation of Androgen Signaling by C-MYC
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An Animal Model with a Cardiomyocyte-Specific Deletion of Estrogen Receptor Alpha: Functional, Metabolic, and Differential Netwo
Washington University School of Medicine Digital Commons@Becker Open Access Publications 2014 An animal model with a cardiomyocyte-specific deletion of estrogen receptor alpha: Functional, metabolic, and differential network analysis Sriram Devanathan Washington University School of Medicine in St. Louis Timothy Whitehead Washington University School of Medicine in St. Louis George G. Schweitzer Washington University School of Medicine in St. Louis Nicole Fettig Washington University School of Medicine in St. Louis Attila Kovacs Washington University School of Medicine in St. Louis See next page for additional authors Follow this and additional works at: https://digitalcommons.wustl.edu/open_access_pubs Recommended Citation Devanathan, Sriram; Whitehead, Timothy; Schweitzer, George G.; Fettig, Nicole; Kovacs, Attila; Korach, Kenneth S.; Finck, Brian N.; and Shoghi, Kooresh I., ,"An animal model with a cardiomyocyte-specific deletion of estrogen receptor alpha: Functional, metabolic, and differential network analysis." PLoS One.9,7. e101900. (2014). https://digitalcommons.wustl.edu/open_access_pubs/3326 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. Authors Sriram Devanathan, Timothy Whitehead, George G. Schweitzer, Nicole Fettig, Attila Kovacs, Kenneth S. Korach, Brian N. Finck, and Kooresh I. Shoghi This open access publication is available at Digital Commons@Becker: https://digitalcommons.wustl.edu/open_access_pubs/3326 An Animal Model with a Cardiomyocyte-Specific Deletion of Estrogen Receptor Alpha: Functional, Metabolic, and Differential Network Analysis Sriram Devanathan1, Timothy Whitehead1, George G. Schweitzer2, Nicole Fettig1, Attila Kovacs3, Kenneth S. -
KLF6 Depletion Promotes NF-Κb Signaling in Glioblastoma
OPEN Oncogene (2017) 36, 3562–3575 www.nature.com/onc ORIGINAL ARTICLE KLF6 depletion promotes NF-κB signaling in glioblastoma AP Masilamani1,2, R Ferrarese1,2, E Kling1,2, NK Thudi3, H Kim4, DM Scholtens5, F Dai1,2, M Hadler1,2, T Unterkircher1,2, L Platania1,2, A Weyerbrock1,2, M Prinz6,7, GY Gillespie8, GR Harsh IV9, M Bredel3,10 and MS Carro1,2,10 Dysregulation of the NF-κB transcription factor occurs in many cancer types. Krüppel-like family of transcription factors (KLFs) regulate the expression of genes involved in cell proliferation, differentiation and survival. Here, we report a new mechanism of NF- κB activation in glioblastoma through depletion of the KLF6 tumor suppressor. We show that KLF6 transactivates multiple genes negatively controlling the NF-κB pathway and consequently reduces NF-κB nuclear localization and downregulates NF-κB targets. Reconstitution of KLF6 attenuates their malignant phenotype and induces neural-like differentiation and senescence, consistent with NF-κB pathway inhibition. KLF6 is heterozygously deleted in 74.5% of the analyzed glioblastomas and predicts unfavorable patient prognosis suggesting that haploinsufficiency is a clinically relevant means of evading KLF6-dependent regulation of NF-κB. Together, our study identifies a new mechanism by which KLF6 regulates NF-κB signaling, and how this mechanism is circumvented in glioblastoma through KLF6 loss. Oncogene (2017) 36, 3562–3575; doi:10.1038/onc.2016.507; published online 6 February 2017 INTRODUCTION coding region have been controversial.16,18–22 KLF6 has been The NF-κB transcription factor family is oncogenic through proposed to perform its tumor suppression function by promoting suppression of programmed cell death, and promotion of tumor G1 cell cycle arrest mainly through cyclin-dependent kinase 15 growth and invasion.1 In tumors, NF-κB can be activated by inhibitor 1A (CDKN1A) promoter transactivation. -
KLF6-SV1 Overexpression Accelerates Human and Mouse Prostate Cancer Progression and Metastasis
KLF6-SV1 overexpression accelerates human and mouse prostate cancer progression and metastasis Goutham Narla, … , Mark A. Rubin, John A. Martignetti J Clin Invest. 2008;118(8):2711-2721. https://doi.org/10.1172/JCI34780. Research Article Oncology Metastatic prostate cancer (PCa) is one of the leading causes of death from cancer in men. The molecular mechanisms underlying the transition from localized tumor to hormone-refractory metastatic PCa remain largely unknown, and their identification is key for predicting prognosis and targeted therapy. Here we demonstrated that increased expression of a splice variant of the Kruppel-like factor 6 (KLF6) tumor suppressor gene, known as KLF6-SV1, in tumors from men after prostatectomy predicted markedly poorer survival and disease recurrence profiles. Analysis of tumor samples revealed that KLF6-SV1 levels were specifically upregulated in hormone-refractory metastatic PCa. In 2 complementary mouse models of metastatic PCa, KLF6-SV1–overexpressing PCa cells were shown by in vivo and ex vivo bioluminescent imaging to metastasize more rapidly and to disseminate to lymph nodes, bone, and brain more often. Interestingly, while KLF6-SV1 overexpression increased metastasis, it did not affect localized tumor growth. KLF6-SV1 inhibition using RNAi induced spontaneous apoptosis in cultured PCa cell lines and suppressed tumor growth in mice. Together, these findings demonstrate that KLF6-SV1 expression levels in PCa tumors at the time of diagnosis can predict the metastatic behavior of the tumor; thus, KLF-SV1 may represent a novel therapeutic target. Find the latest version: https://jci.me/34780/pdf Research article KLF6-SV1 overexpression accelerates human and mouse prostate cancer progression and metastasis Goutham Narla,1,2 Analisa DiFeo,1 Yolanda Fernandez,1 Saravana Dhanasekaran,3 Fei Huang,1 Jaya Sangodkar,1,2 Eldad Hod,2 Devin Leake,4 Scott L. -
Oestrogen Receptor α AF-1 and AF-2 Domains Have Cell
ARTICLE DOI: 10.1038/s41467-018-07175-0 OPEN Oestrogen receptor α AF-1 and AF-2 domains have cell population-specific functions in the mammary epithelium Stéphanie Cagnet1, Dalya Ataca 1, George Sflomos1, Patrick Aouad1, Sonia Schuepbach-Mallepell2, Henry Hugues3, Andrée Krust4, Ayyakkannu Ayyanan1, Valentina Scabia1 & Cathrin Brisken 1 α α 1234567890():,; Oestrogen receptor (ER ) is a transcription factor with ligand-independent and ligand- dependent activation functions (AF)-1 and -2. Oestrogens control postnatal mammary gland development acting on a subset of mammary epithelial cells (MECs), termed sensor cells, which are ERα-positive by immunohistochemistry (IHC) and secrete paracrine factors, which stimulate ERα-negative responder cells. Here we show that deletion of AF-1 or AF-2 blocks pubertal ductal growth and subsequent development because both are required for expres- sion of essential paracrine mediators. Thirty percent of the luminal cells are ERα-negative by IHC but express Esr1 transcripts. This low level ERα expression through AF-2 is essential for cell expansion during puberty and growth-inhibitory during pregnancy. Cell-intrinsic ERα is not required for cell proliferation nor for secretory differentiation but controls transcript levels of cell motility and cell adhesion genes and a stem cell and epithelial mesenchymal transition (EMT) signature identifying ERα as a key regulator of mammary epithelial cell plasticity. 1 Swiss Institute for Experimental Cancer Research, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland. 2 Department of Biochemistry, University of Lausanne, CH-1066 Epalinges, Switzerland. 3 Centre Hospitalier Universitaire Vaudois, Department of Laboratory Medecine, University Hospital of Lausanne, CH-1011 Lausanne, Switzerland. -
Expression Is a New Potential Biomarker for Adverse
www.nature.com/scientificreports OPEN Decreased MYC‑associated factor X (MAX) expression is a new potential biomarker for adverse prognosis in anaplastic large cell lymphoma Takahisa Yamashita1, Morihiro Higashi1, Shuji Momose1, Akiko Adachi2, Toshiki Watanabe3, Yuka Tanaka4, Michihide Tokuhira4, Masahiro Kizaki4 & Jun‑ichi Tamaru1* MYC-associated factor X (MAX) is a protein in the basic helix‑loop‑helix leucine zipper family, which is ubiquitously and constitutively expressed in various normal tissues and tumors. MAX protein mediates various cellular functions such as proliferation, diferentiation, and apoptosis through the MYC-MAX protein complex. Recently, it has been reported that MYC regulates the proliferation of anaplastic large cell lymphoma. However, the expression and function of MAX in anaplastic large cell lymphoma remain to be elucidated. We herein investigated MAX expression in anaplastic large cell lymphoma (ALCL) and peripheral T-cell lymphoma, not otherwise specifed (PTCL-NOS) and found 11 of 37 patients (30%) with ALCL lacked MAX expression, whereas 15 of 15 patients (100%) with PTCL-NOS expressed MAX protein. ALCL patients lacking MAX expression had a signifcantly inferior prognosis compared with patients having MAX expression. Moreover, patients without MAX expression signifcantly had histological non-common variants, which were mainly detected in aggressive ALCL cases. Immunohistochemical analysis showed that MAX expression was related to the expression of MYC and cytotoxic molecules. These fndings demonstrate that lack of MAX expression is a potential poor prognostic biomarker in ALCL and a candidate marker for diferential diagnosis of ALCL and PTCL‑noS. Anaplastic large cell lymphoma (ALCL) is an aggressive mature T-cell lymphoma that usually expresses the lymphocyte activation marker CD30 and ofen lacks expression of T-cell antigens, such as CD3, CD5, and CD71. -
A High-Throughput Genome-Integrated Assay Reveals Spatial Dependencies Governing Tcf7l2 Binding
bioRxiv preprint doi: https://doi.org/10.1101/2020.03.16.993204; this version posted March 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. A high-throughput genome-integrated assay reveals spatial dependencies governing Tcf7l2 binding Tomasz Szczesnik1,2,3, Lendy Chu4, Joshua W. K. Ho1,2,5, Richard Sherwood4,6,7 March 16, 2020 1 Author affiliations 1. Victor Chang Cardiac Research Institute, NSW 2010 Darlinghurst, Australia. 2. St Vincent’s Clinical School, University of New South Wales, NSW 2010 Darlinghurst, Australia. 3. Department of Biosystems Science and Engineering, ETH-Zürich, Mattenstrasse 26, Basel, 4058, Switzerland. 4. Division of Genetics, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, MA 02115 Boston, USA. 5. School of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam, Hong Kong SAR, China. 6. Hubrecht Institute, 3584 CT Utrecht, the Netherlands. 7. Corresponding author, [email protected] 2 Summary Predicting where transcription factors bind in the genome from their in-vitro DNA binding affinity is confounded by the large number of possible interactions with nearby transcription factors. To characterise the binding logic for the Wnt effector transcription factor Tcf7l2, we have developed a high-throughput screening platform in which thousands of 99-bp synthesised DNA sequences are inserted into a specific genomic locus through CRISPR/Cas9-based homology-directed repair, followed by measurement of Tcf7l2 binding by DamID. Using this platform at two genomic loci in mouse embryonic stem cells, we show that while the binding of Tcf7l2 closely follows the in-vitro motif binding strength and is influenced by local chromatin accessibility, it is also strongly affected by the surrounding 99-bp of sequence. -
AP-1 in Cell Proliferation and Survival
Oncogene (2001) 20, 2390 ± 2400 ã 2001 Nature Publishing Group All rights reserved 0950 ± 9232/01 $15.00 www.nature.com/onc AP-1 in cell proliferation and survival Eitan Shaulian1 and Michael Karin*,1 1Laboratory of Gene Regulation and Signal Transduction, Department of Pharmacology, University of California San Diego, 9500 Gilman Drive, La Jolla, California, CA 92093-0636, USA A plethora of physiological and pathological stimuli extensively discussed previously (Angel and Karin, induce and activate a group of DNA binding proteins 1991; Karin, 1995). that form AP-1 dimers. These proteins include the Jun, The mammalian AP-1 proteins are homodimers and Fos and ATF subgroups of transcription factors. Recent heterodimers composed of basic region-leucine zipper studies using cells and mice de®cient in individual AP-1 (bZIP) proteins that belong to the Jun (c-Jun, JunB proteins have begun to shed light on their physiological and JunD), Fos (c-Fos, FosB, Fra-1 and Fra-2), Jun functions in the control of cell proliferation, neoplastic dimerization partners (JDP1 and JDP2) and the closely transformation and apoptosis. Above all such studies related activating transcription factors (ATF2, LRF1/ have identi®ed some of the target genes that mediate the ATF3 and B-ATF) subfamilies (reviewed by (Angel eects of AP-1 proteins on cell proliferation and death. and Karin, 1991; Aronheim et al., 1997; Karin et al., There is evidence that AP-1 proteins, mostly those that 1997; Liebermann et al., 1998; Wisdom, 1999). In belong to the Jun group, control cell life and death addition, some of the Maf proteins (v-Maf, c-Maf and through their ability to regulate the expression and Nrl) can heterodimerize with c-Jun or c-Fos (Nishiza- function of cell cycle regulators such as Cyclin D1, p53, wa et al., 1989; Swaroop et al., 1992), whereas other p21cip1/waf1, p19ARF and p16. -
ORIGINAL ARTICLE Correlation Between Density of CD8 + T Cell
Author Manuscript Published OnlineFirst on June 9, 2015; DOI: 10.1158/0008-5472.CAN-14-3051 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. ORIGINAL ARTICLE Correlation between density of CD8+ T cell infiltrates in microsatellite unstable colorectal cancers and frameshift mutations: a rationale for personalized immunotherapy Running title: CD8+ cell density correlates with mutations in MSI-CRCs Pauline Maby1; David Tougeron1,2,3; Mohamad Hamieh1; Bernhard Mlecnik4,5,6; Hafid Kora1; Gabriela Bindea4,5,6; Helen K Angell4,5,6,7; Tessa Fredriksen4,5,6; Nicolas Elie8; Emilie Fauquembergue1; Aurélie Drouet1; Jérôme Leprince9; Jacques Benichou10; Jacques Mauillon11,12; Florence Le Pessot13; Richard Sesboüé1; Thierry Frébourg1,11; Jérôme Galon4,5,6; Jean-Baptiste Latouche1,11 1Inserm U1079, Institute for Research and Innovation in Biomedecine (IRIB), Rouen, France; 2Gastroenterology Department, Poitiers University Hospital, Poitiers, France; 3Laboratoire Inflammation Tissus Epithéliaux et Cytokines, EA 4331, Poitiers University, Poitiers, France; 4 Inserm U1138, Laboratory of Integrative Cancer Immunology, Paris, France; 5Université Paris Descartes, Paris, France; 6Cordeliers Research Centre, Université Pierre et Marie Curie, Paris 6, Paris, France; 7AstraZeneca Pharmaceuticals, Alderley Park, Cheshire, UK 8Imaging Core Facility, CMABIO, Caen University Hospital, Caen, France; 9Inserm U982, Institute for Research and Innovation in Biomedecine (IRIB), Rouen University, France 1 Downloaded from -
Nuclear Receptor Reverbα Is a State-Dependent Regulator of Liver Energy Metabolism
Nuclear receptor REVERBα is a state-dependent regulator of liver energy metabolism A. Louise Huntera,1, Charlotte E. Pelekanoua,1, Antony Adamsonb, Polly Downtona, Nichola J. Barrona, Thomas Cornfieldc,d, Toryn M. Poolmanc,d, Neil Humphreysb,2, Peter S. Cunninghama, Leanne Hodsonc,d, Andrew S. I. Loudona, Mudassar Iqbale, David A. Bechtolda,3,4, and David W. Rayc,d,3,4 aCentre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, M13 9PT Manchester, United Kingdom; bGenome Editing Unit, Faculty of Biology, Medicine and Health, University of Manchester, M13 9PT Manchester, United Kingdom; cOxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, OX3 7LE Oxford, United Kingdom; dNational Institute for Health Research Oxford Biomedical Research Centre, John Radcliffe Hospital, OX3 9DU Oxford, United Kingdom; and eDivision of Informatics, Imaging & Data Sciences, Faculty of Biology, Medicine and Health, University of Manchester, M13 9PT Manchester, United Kingdom Edited by David D. Moore, Baylor College of Medicine, Houston, TX, and approved August 25, 2020 (received for review April 3, 2020) The nuclear receptor REVERBα is a core component of the circadian motifs (paired AGGTCA hexamers with a two-nucleotide spacer) clock and proposed to be a dominant regulator of hepatic lipid metab- or two closely situated RORE sites (16–19) or, as has more re- olism. Using antibody-independent ChIP-sequencing of REVERBα in cently been proposed, when tethered to tissue-specific transcrip- mouse liver, we reveal a high-confidence cistrome and define direct tion factors (e.g., HNF6) through mechanisms independent of target genes. REVERBα-binding sites are highly enriched for consensus direct DNA binding (20). -
Diversity of Human Clock Genotypes and Consequences
UCSF UC San Francisco Previously Published Works Title Diversity of human clock genotypes and consequences. Permalink https://escholarship.org/uc/item/4125b7mv Authors Zhang, Luoying Ptáček, Louis J Fu, Ying-Hui Publication Date 2013 DOI 10.1016/b978-0-12-396971-2.00003-8 Peer reviewed eScholarship.org Powered by the California Digital Library University of California CHAPTER THREE Diversity of Human Clock Genotypes and Consequences Luoying Zhang*, Louis J. Ptáček*,†, Ying-Hui Fu* *Department of Neurology, University of California, San Francisco, California, USA †Howard Hughes Medical Institute, University of California, San Francisco, California, USA Contents 1. Introduction 52 2. BMAL1 53 3. CLOCK 54 4. NPAS2 57 5. PER1 58 6. PER2 58 7. PER3 62 8. CRY1 64 9. CRY2 64 10. REV-ERBa 65 11. CK1e 65 12. CK1d 66 13. CUL1 67 14. b-TrCP 67 15. DEC1 68 16. DEC2 68 17. TIMELESS 70 18. Concluding Remarks 70 References 74 Abstract The molecular clock consists of a number of genes that form transcriptional and post- transcriptional feedback loops, which function together to generate circadian oscilla- tions that give rise to circadian rhythms of our behavioral and physiological processes. Genetic variations in these clock genes have been shown to be associated with phenotypic effects in a repertoire of biological processes, such as diurnal prefer- ence, sleep, metabolism, mood regulation, addiction, and fertility. Consistently, rodent models carrying mutations in clock genes also demonstrate similar phenotypes. Taken together, these studies suggest that human clock-gene variants contribute to the phe- notypic differences observed in various behavioral and physiological processes, # Progress in Molecular Biology and Translational Science, Volume 119 2013 Elsevier Inc. -
Physical Interaction of the Retinoblastoma Protein with Human D Cyclins
Cell, Vol. 73, 499-511, May 7, 1993, Copyright 0 1993 by Cell Press Physical Interaction of the Retinoblastoma Protein with Human D Cyclins Steven F. Dowdy,* Philip W. Hinds,’ Kenway Louie,’ into Rb- tumor cells by microinjection, viral infection, or Steven I. Reed,t Andrew Arnold,* transfection can lead to the growth arrest of these recipient and Robert A. Weinberg” cells (Huang et al., 1988; Goodrich et al., 1991; Templeton *The Whitehead Institute for Biomedical Research et al., 1991; Hinds et al., 1992). and Department of Biology Oncoproteins specified by the SV40, adenovirus, and Massachusetts Institute of Technology papilloma DNA tumor viruses have been shown to associ- Cambridge, Massachusetts 02142 ate with pRb in virus-transformed cells (Whyte et al., 1988; tThe Scripps Research Institute DeCaprio et al., 1988; Dyson et al., 1989). Oncoprotein Department of Molecular Biology binding of pRb is presumed to lead to its sequestration 10666 North Torrey Pines Road and functional inactivation. Conserved region II mutants La Jolla, California 92037 of adenovirus ElA, SV40 large T antigen, human papil- *Endocrine Unit loma E7 viral oncoproteins that have lost their ability to and Massachusetts General Hospital Cancer Center bind pflb, and other pRb-related proteins exhibit signifi- Massachusetts General Hospital cantly reduced transforming potential (Moran et al., 1986; and Harvard Medical School Lillie et al., 1987; Cherington et al., 1988; DeCaprio et al., Boston, Massachusetts 02114 1988; Moran, 1988; Smith and Ziff, 1988; Whyte et al., 1989). This suggests that binding of pRb and related pro- teins by these oncoproteins is critical to their transforming abilities. -
TP53 Mutations As a Driver of Metastasis Signaling in Advanced Cancer Patients
cancers Article TP53 Mutations as a Driver of Metastasis Signaling in Advanced Cancer Patients Ritu Pandey 1,2,*, Nathan Johnson 3, Laurence Cooke 1, Benny Johnson 4, Yuliang Chen 1, Manjari Pandey 5, Jason Chandler 5 and Daruka Mahadevan 6,* 1 Cancer Center, University of Arizona, Tucson, AZ 85724, USA; [email protected] (L.C.); [email protected] (Y.C.) 2 Department of Cellular and Molecular Medicine, University of Arizona, Tucson, AZ 85724, USA 3 School of Medicine, Vanderbilt University, Nashville, TN 37325, USA; [email protected] 4 MD Anderson Cancer Center, Houston, TX 77030, USA; [email protected] 5 West Cancer Center, 7945 Wolf River Blvd, Germantown, TN 38138, USA; [email protected] (M.P.); [email protected] (J.C.) 6 Mays Cancer Center, University of Texas Health San Antonio, San Antonio, TX 78229, USA * Correspondence: [email protected] (R.P.); [email protected] (D.M.) Simple Summary: The DNA sequencing of cancer provides information about specific genetic changes that could help with treatment decisions. Tumors from different tissues change over time and acquire new genetic changes particularly with treatment. Our study analyzed the gene changes of 171 advanced cancer patients. We predicted that tumors gain new mutations but that TP53 mutations (guardian of the human genome) are conserved as the tumor progresses from primary to metastatic sites and across tissue types. We analyzed the primary and metastatic site gene changes in 25 tissue types and conducted in-depth analysis of colon and lung cancer sites for substantial changes. TP53 site specific mutations were different across tissue types and suggest different molecular changes.