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BMC Evolutionary Biology BioMed Central Research article Open Access An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Georgia Tsagkogeorga1,2, Xavier Turon3, Russell R Hopcroft4, Marie- Ka Tilak1,2, Tamar Feldstein5, Noa Shenkar5,6, Yossi Loya5, Dorothée Huchon5, Emmanuel JP Douzery1,2 and Frédéric Delsuc*1,2 Address: 1Université Montpellier 2, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 2CNRS, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 3Centre d'Estudis Avançats de Blanes (CEAB, CSIC), Accés Cala S. Francesc 14, 17300 Blanes (Girona), Spain, 4Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, Alaska, USA, 5Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel and 6Department of Biology, University of Washington, Seattle WA 98195, USA Email: Georgia Tsagkogeorga - [email protected]; Xavier Turon - [email protected]; Russell R Hopcroft - [email protected]; Marie-Ka Tilak - [email protected]; Tamar Feldstein - [email protected]; Noa Shenkar - [email protected]; Yossi Loya - [email protected]; Dorothée Huchon - [email protected]; Emmanuel JP Douzery - [email protected]; Frédéric Delsuc* - [email protected] * Corresponding author Published: 5 August 2009 Received: 16 October 2008 Accepted: 5 August 2009 BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 This article is available from: http://www.biomedcentral.com/1471-2148/9/187 © 2009 Tsagkogeorga et al; licensee BioMed Central Ltd. -
Ascidiacea (Chordata: Tunicata) of Greece: an Updated Checklist
Biodiversity Data Journal 4: e9273 doi: 10.3897/BDJ.4.e9273 Taxonomic Paper Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist Chryssanthi Antoniadou‡, Vasilis Gerovasileiou§§, Nicolas Bailly ‡ Department of Zoology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece § Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Greece Corresponding author: Chryssanthi Antoniadou ([email protected]) Academic editor: Christos Arvanitidis Received: 18 May 2016 | Accepted: 17 Jul 2016 | Published: 01 Nov 2016 Citation: Antoniadou C, Gerovasileiou V, Bailly N (2016) Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist. Biodiversity Data Journal 4: e9273. https://doi.org/10.3897/BDJ.4.e9273 Abstract Background The checklist of the ascidian fauna (Tunicata: Ascidiacea) of Greece was compiled within the framework of the Greek Taxon Information System (GTIS), an application of the LifeWatchGreece Research Infrastructure (ESFRI) aiming to produce a complete checklist of species recorded from Greece. This checklist was constructed by updating an existing one with the inclusion of recently published records. All the reported species from Greek waters were taxonomically revised and cross-checked with the Ascidiacea World Database. New information The updated checklist of the class Ascidiacea of Greece comprises 75 species, classified in 33 genera, 12 families, and 3 orders. In total, 8 species have been added to the previous species list (4 Aplousobranchia, 2 Phlebobranchia, and 2 Stolidobranchia). Aplousobranchia was the most speciose order, followed by Stolidobranchia. Most species belonged to the families Didemnidae, Polyclinidae, Pyuridae, Ascidiidae, and Styelidae; these 4 families comprise 76% of the Greek ascidian species richness. The present effort revealed the limited taxonomic research effort devoted to the ascidian fauna of Greece, © Antoniadou C et al. -
And Description of a New Species, Ciona Interme
An integrative taxonomic framework for the study of the genus Ciona (Ascidiacea) and description of a new species, Ciona intermedia Francesco Mastrototaro, Federica Montesanto, Marika Salonna, Frédérique Viard, Giovanni Chimienti, Egidio Trainito, Carmela Gissi To cite this version: Francesco Mastrototaro, Federica Montesanto, Marika Salonna, Frédérique Viard, Giovanni Chimi- enti, et al.. An integrative taxonomic framework for the study of the genus Ciona (Ascidiacea) and description of a new species, Ciona intermedia. Zoological Journal of the Linnean Society, Linnean Society of London, 2020, 10.1093/zoolinnean/zlaa042. hal-02861027 HAL Id: hal-02861027 https://hal.archives-ouvertes.fr/hal-02861027 Submitted on 8 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Doi: 10.1093/zoolinnean/zlaa042 An integrative taxonomy framework for the study of the genus Ciona (Ascidiacea) and the description of the new species Ciona intermedia Francesco Mastrototaro1, Federica Montesanto1*, Marika Salonna2, Frédérique Viard3, Giovanni Chimienti1, Egidio Trainito4, Carmela Gissi2,5,* 1 Department of Biology and CoNISMa LRU, University of Bari “Aldo Moro” Via Orabona, 4 - 70125 Bari, Italy 2 Department of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari “Aldo Moro”, Via Orabona, 4 - 70125 Bari, Italy 3 Sorbonne Université, CNRS, Lab. -
Redalyc.Keys for the Identification of Families and Genera of Atlantic
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Moreira da Rocha, Rosana; Bastos Zanata, Thais; Moreno, Tatiane Regina Keys for the identification of families and genera of Atlantic shallow water ascidians Biota Neotropica, vol. 12, núm. 1, enero-marzo, 2012, pp. 1-35 Instituto Virtual da Biodiversidade Campinas, Brasil Available in: http://www.redalyc.org/articulo.oa?id=199123750022 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Keys for the identification of families and genera of Atlantic shallow water ascidians Rocha, R.M. et al. Biota Neotrop. 2012, 12(1): 000-000. On line version of this paper is available from: http://www.biotaneotropica.org.br/v12n1/en/abstract?identification-key+bn01712012012 A versão on-line completa deste artigo está disponível em: http://www.biotaneotropica.org.br/v12n1/pt/abstract?identification-key+bn01712012012 Received/ Recebido em 16/07/2011 - Revised/ Versão reformulada recebida em 13/03/2012 - Accepted/ Publicado em 14/03/2012 ISSN 1676-0603 (on-line) Biota Neotropica is an electronic, peer-reviewed journal edited by the Program BIOTA/FAPESP: The Virtual Institute of Biodiversity. This journal’s aim is to disseminate the results of original research work, associated or not to the program, concerned with characterization, conservation and sustainable use of biodiversity within the Neotropical region. Biota Neotropica é uma revista do Programa BIOTA/FAPESP - O Instituto Virtual da Biodiversidade, que publica resultados de pesquisa original, vinculada ou não ao programa, que abordem a temática caracterização, conservação e uso sustentável da biodiversidade na região Neotropical. -
Benthic Field Guide 5.5.Indb
Field Identifi cation Guide to Heard Island and McDonald Islands Benthic Invertebrates Invertebrates Benthic Moore Islands Kirrily and McDonald and Hibberd Ty Island Heard to Guide cation Identifi Field Field Identifi cation Guide to Heard Island and McDonald Islands Benthic Invertebrates A guide for scientifi c observers aboard fi shing vessels Little is known about the deep sea benthic invertebrate diversity in the territory of Heard Island and McDonald Islands (HIMI). In an initiative to help further our understanding, invertebrate surveys over the past seven years have now revealed more than 500 species, many of which are endemic. This is an essential reference guide to these species. Illustrated with hundreds of representative photographs, it includes brief narratives on the biology and ecology of the major taxonomic groups and characteristic features of common species. It is primarily aimed at scientifi c observers, and is intended to be used as both a training tool prior to deployment at-sea, and for use in making accurate identifi cations of invertebrate by catch when operating in the HIMI region. Many of the featured organisms are also found throughout the Indian sector of the Southern Ocean, the guide therefore having national appeal. Ty Hibberd and Kirrily Moore Australian Antarctic Division Fisheries Research and Development Corporation covers2.indd 113 11/8/09 2:55:44 PM Author: Hibberd, Ty. Title: Field identification guide to Heard Island and McDonald Islands benthic invertebrates : a guide for scientific observers aboard fishing vessels / Ty Hibberd, Kirrily Moore. Edition: 1st ed. ISBN: 9781876934156 (pbk.) Notes: Bibliography. Subjects: Benthic animals—Heard Island (Heard and McDonald Islands)--Identification. -
Ascidian News*
ASCIDIAN NEWS* Gretchen Lambert 12001 11th Ave. NW, Seattle, WA 98177 206-365-3734 [email protected] home page: http://depts.washington.edu/ascidian/ Number 79 June 2017 Rosana Rocha and I will be teaching the next tunicate workshop June 20-July 4 in Panama, at the Smithsonian’s Bocas del Toro Tropical Research Institute on the Caribbean. This is the 5th advanced workshop we have taught since 2006 at this lab; it is very gratifying to see that many of the participants are now faculty members at various institutions, with their own labs and students pursuing research projects on ascidians. A big thank-you to all who sent in contributions. There are 113 New Publications listed at the end of this issue. Please continue to send me articles, and your new papers, to be included in the next issue of AN. *Ascidian News is not part of the scientific literature and should not be cited as such. NEWS AND VIEWS 1. I hope to see many of you at the upcoming Intl. Tunicata meeting in New York City July 17-21, at New York University, hosted by Dr. Lionel Christiaen. There will be a welcome reception on the evening of July 16th. For more information see https://2017-tunicate- meeting.bio.nyu.edu/ . 2. The next International Summer Course will be held at Sugashima Marine Biological Laboratory, Toba, Mie Prefecture, Japan, from July 7 to July 14, 2017. This course deals with experiments and lectures on basic developmental biology of sea urchins and ascidians, basic taxonomy, and advanced course of experiments on genome editing and proteomics. -
Ascidiacea Ascidiacea
ASCIDIACEA ASCIDIACEA The Ascidiacea, the largest class of the Tunicata, are fixed, filter feeding organisms found in most marine habitats from intertidal to hadal depths. The class contains two orders, the Enterogona in which the atrial cavity (atrium) develops from paired dorsal invaginations, and the Pleurogona in which it develops from a single median invagination. These ordinal characters are not present in adult organisms. Accordingly, the subordinal groupings, Aplousobranchia and Phlebobranchia (Enterogona) and Stolidobranchia (Pleurogona), are of more practical use at the higher taxon level. In the earliest classification (Savigny 1816; Milne-Edwards 1841) ascidians-including the known salps, doliolids and later (Huxley 1851), appendicularians-were subdivided according to their social organisation, namely, solitary and colonial forms, the latter with zooids either embedded (compound) or joined by basal stolons (social). Recognising the anomalies this classification created, Lahille (1886) used the branchial sacs to divide the group (now known as Tunicata) into three orders: Aplousobranchia (pharynx lacking both internal longitudinal vessels and folds), Phlebobranchia (pharynx with internal longitudinal vessels but lacking folds), and Stolidobranchia (pharynx with both internal longitudinal vessels and folds). Subsequently, with thaliaceans and appendicularians in their own separate classes, Lahille's suborders came to refer only to the Class Ascidiacea, and his definitions were amplified by consideration of the position of the gut and gonads relative to the branchial sac (Harant 1929). Kott (1969) recognised that the position of the gut and gonads are linked with the condition and function of the epicardium. These are significant characters and are informative of phylogenetic relationships. However, although generally conforming with Lahille's orders, the new phylogeny cannot be reconciled with a too rigid adherence to his definitions based solely on the branchial sac. -
Coralligenous Based Indicators to Evaluate and Monitor
Towards Integrated Marine Research Strategy and Programmes CIGESMED : Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the Mediterranean coastal waters French dates: 1st March2013 -29th October2016 Greek dates: 1st January2013 -31st December2015 Turkish dates: 1st February2013 –31st January2016 FINAL REPORT 1 INDEX 1. Project consortium. Total funding and per partner .............................................................. 3 2. Executive summary ............................................................................................................... 3 3. Aims and scope (objectives) .................................................................................................. 6 4. Results by work package ....................................................................................................... 8 WP1: MANAGEMENT, COORDINATION & REPORTING ............................................................. 8 WP2: CORALLIGEN ASSESSMENT AND THREATS ..................................................................... 15 WP3: INDICATORS DEVELOPMENT AND TEST ......................................................................... 39 WP4: INNOVATIVE MONITORING TOOLS ................................................................................ 52 WP5: CITIZEN SCIENCE NETWORK IMPLEMENTATION ........................................................... 58 WP6: DATA MANAGEMENT, MAPPING AND ASSIMILATION TOOLS ....................................... 61 WP7: OUTREACH, STAKEHOLDER ENGAGEMENT -
A New Species of the Genus Rhopalaea (Class: Ascidiacea) from the Red Sea
Zootaxa 3599 (1): 051–058 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2013 Magnolia Press ISSN 1175-5334 (online edition) http://zoobank.org/urn:lsid:zoobank.org:pub:11A05DB6-4B22-4113-999E-183F7020233F A new species of the genus Rhopalaea (Class: Ascidiacea) from the Red Sea NOA SHENKAR Department of Zoology, The George S. Wise Faculty of Life Sciences, Tel-Aviv University, Tel Aviv 69978, Israel E-mail: [email protected] Telephone: +972-3-6409809 Fax: +972-36407682 Abstract During regular surveys and collection of ascidians along the Red Sea coast of Israel, several specimens of an undescribed species of Rhopalaea were collected. Samples were collected by SCUBA from the natural coral reef and man-made struc- tures at depths between 10 to 40m. This is the first species of the genus Rhopalaea described from the Red Sea, which is characterized by a transparent, uncolored gelatinous tunic with elongated attachment extensions, and is distinguished by its eight atrial lobes, thoracic muscle arrangement, and branchial sac structure. Key words: Ascidians, Red Sea, Gulf of Aqaba, Elat, Coral reef Introduction The coral reefs of the Red Sea are well known for their extraordinarily high biodiversity and high number of endemic species (Loya 1972, Goren 1993). Many species of ascidians that have a widely cosmopolitan distribution nowadays such as Phallusia nigra and Didemnum candidum were originally described by Savigny of this area (Savigny 1816). However, not many species have been added to the original inventory list since then. In order to monitor the current ascidian fauna of the region a new collection of ascidians has been established at the National Collections of Natural History at Tel-Aviv University (TAU), Israel. -
13 Acorn-Worms and Sea Squirts
1 13 ACORN-WORMS AND SEA SQUIRTS PHYLUM CHORDATA: SUBPHYLUM UROCHORDATA (= TUNICATA) Class Ascidiacea The tunicate body is contained within a test, or tunic, secreted by the underlying mantle. This test may be thin, thick, clear, opaque, clean, or covered with sand or living organisms. Tunicates are represented on most rocky shores by the ascidians, which are sessile and either colonial or unitary. Some are indefinite in shape, and so hidden within their tunics that they superficially resemble sponges or some of the more fleshy bryozoans or cnidarians (e.g. Alcyonidium or Alcyonium). When cut open, however, they display a more complicated internal organization (Fig. 13.2), particularly a filter-feeding pharynx, or branchial sac, in which mucus is secreted by the ventral endostyle. The branchial sac contains perforations, the stigmata, in transverse rows. Transverse blood vessels pass between adjacent rows. In some genera the stigmata are arranged in spiral groups. The feeding current enters the test via an oral (or branchial) opening or siphon, and passes into the pharynx through a ring of oral tentacles. Flow is generated by cilia, passing through the stigmata into the surrounding atrium. From there the water passes to the exterior via a dorsal atrial (excurrent) siphon. Positive pressure builds up inside the atrium, which becomes distended with water. On disturbance, contraction of mantle muscles forces out jets of water through the oral and atrial sphincters, hence the term ‘sea squirts’ popularly applied to larger ascidians. Unitary ascidians may be 1 cm long or more, and the largest British forms reach about 15 cm. -
Towards Integrated Marine Research Strategy and Programmes CIGESMED
Towards Integrated Marine Research Strategy and Programmes CIGESMED : Coralligenous based Indicators to evaluate and monitor the "Good Environmental Status" of the Mediterranean coastal waters French dates: 1st March2013 -29th October2016 Greek dates: 1st January2013 -31st December2015 Turkish dates: 1st February2013 –31st January2016 FINAL REPORT Féral (J.-P.)/P.I., Arvanitidis (C.), Chenuil (A.), Çinar (M.E.), David (R.), Egea (E.), Sartoretto (S.) 1 INDEX 1. Project consortium. Total funding and per partner .............................................................. 3 2. Executive summary ............................................................................................................... 3 3. Aims and scope (objectives) .................................................................................................. 6 4. Results by work package ....................................................................................................... 8 WP1: MANAGEMENT, COORDINATION & REPORTING ............................................................. 8 WP2: CORALLIGEN ASSESSMENT AND THREATS ..................................................................... 15 WP3: INDICATORS DEVELOPMENT AND TEST ......................................................................... 39 WP4: INNOVATIVE MONITORING TOOLS ................................................................................ 52 WP5: CITIZEN SCIENCE NETWORK IMPLEMENTATION ........................................................... 58 WP6: DATA MANAGEMENT, MAPPING -
Haig Fras SAC Monitoring Report 2015 V3
Haig Fras Special Area of Conservation (SAC) Monitoring Report 2015 MPA Monitoring Programme Contract Reference: MB0129 Report Number: 11 Version: 3 July 2019 Project Title: Marine Protected Areas (MPA) Monitoring Programme Report No. 11. Title: Haig Fras Special Area of Conservation (SAC) Monitoring Report 2015 Defra Project Code: MB0129 Defra Contract Manager: Carole Kelly Funded by: Department for Environment, Food and Rural Affairs (Defra) Marine and Fisheries Seacole Block 2 Marsham Street London SW1P 4DF Authorship Anna Downie Centre for Environment, Fisheries and Aquaculture Science (Cefas) Joanna Bluemel Centre for Environment, Fisheries and Aquaculture Science (Cefas) Mark Breckels Centre for Environment, Fisheries and Aquaculture Science (Cefas) Fionnuala McBreen Joint Nature Conservation Committee (JNCC) Recommended Citation Downie, A., Bluemel, J., Breckels, M. and McBreen, F. (2019). Haig Fras Special Area of Conservation (SAC) Monitoring Report 2015. MPA Monitoring Programme Report No. 11. Department for Environment, Food and Rural Affairs (Defra). Contact JNCC: Marine Monitoring Team ([email protected]) Acknowledgements We thank the Marine Protected Areas Survey Coordination and Evidence Group (MPAG) representatives for reviewing earlier drafts of this report, and Dr. Marcel Austenfeld for his advice and support in designing the macro for batch processing the laser measurements of images using ImageJ. Disclaimer: The content of this report does not necessarily reflect the views of Defra, nor is Defra liable for the accuracy of information provided, or responsible for any use of the reports content. Although the data provided in this report have been quality assured, the final products - e.g. habitat maps – may be subject to revision following any further data provision or once they have been used in SNCB advice or assessments.