Ontology and Information Systems
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Artificial Intelligence in Health Care: the Hope, the Hype, the Promise, the Peril
Artificial Intelligence in Health Care: The Hope, the Hype, the Promise, the Peril Michael Matheny, Sonoo Thadaney Israni, Mahnoor Ahmed, and Danielle Whicher, Editors WASHINGTON, DC NAM.EDU PREPUBLICATION COPY - Uncorrected Proofs NATIONAL ACADEMY OF MEDICINE • 500 Fifth Street, NW • WASHINGTON, DC 20001 NOTICE: This publication has undergone peer review according to procedures established by the National Academy of Medicine (NAM). Publication by the NAM worthy of public attention, but does not constitute endorsement of conclusions and recommendationssignifies that it is the by productthe NAM. of The a carefully views presented considered in processthis publication and is a contributionare those of individual contributors and do not represent formal consensus positions of the authors’ organizations; the NAM; or the National Academies of Sciences, Engineering, and Medicine. Library of Congress Cataloging-in-Publication Data to Come Copyright 2019 by the National Academy of Sciences. All rights reserved. Printed in the United States of America. Suggested citation: Matheny, M., S. Thadaney Israni, M. Ahmed, and D. Whicher, Editors. 2019. Artificial Intelligence in Health Care: The Hope, the Hype, the Promise, the Peril. NAM Special Publication. Washington, DC: National Academy of Medicine. PREPUBLICATION COPY - Uncorrected Proofs “Knowing is not enough; we must apply. Willing is not enough; we must do.” --GOETHE PREPUBLICATION COPY - Uncorrected Proofs ABOUT THE NATIONAL ACADEMY OF MEDICINE The National Academy of Medicine is one of three Academies constituting the Nation- al Academies of Sciences, Engineering, and Medicine (the National Academies). The Na- tional Academies provide independent, objective analysis and advice to the nation and conduct other activities to solve complex problems and inform public policy decisions. -
Annual Report 2018–2019 Our Vision
ANNUAL REPORT 2018–2019 OUR VISION We shape tomorrow. We confront problems and create solutions. We expand information’s impact and technology’s potential. Together, our faculty, staff, students, and alumni make the world a better place—day by day, project by project, leap by leap. LEADERSHIP Raj Acharya Since its establishment in 2000, the Luddy School of Informatics, Computing, and Dean Engineering has built a reputation as one of the broadest of its kind. Our more than 3,000 students come from Indiana and around the world, and our unique blend Mathew Palakal of programs in informatics, computer science, intelligent systems engineering, Senior Executive Associate information and library science, data science, and more create an interdisciplinary, Dean collaborative environment where ideas thrive. Erik Stolterman Bergqvist Our forward-looking school is a mélange, a salad bowl of disparate but related Senior Executive Associate disciplines. That salad bowl provides us with a holistic taste of creativity and Dean innovation while preserving and enhancing the taste of the individual components. Esfandiar Haghverdi As we have grown exponentially through our first two decades, we have maintained Executive Associate Dean for our core values with an open-minded view of tomorrow, one that has allowed us to Undergraduate Education stay on the cutting edge of technology while anticipating what the future holds. David Leake We accomplished much during the 2018-19 school year. Our information and library Executive Associate Dean science program was ranked second in the world behind only Harvard by the 2018 Academic Ranking of World Universities. Researchers at our school garnered Kay Connelly $16.1 million in grants from the National Science Foundation, the National Institute Associate Dean for Research of Health, the National Cancer Institute, the Department of Defense, and other prestigious organizations, and our school ranks 12th in computer and information Karl F. -
A Framework for Comparing the Use of a Linguistic Ontology in an Application
A Framework for Comparing the use of a Linguistic Ontology in an Application Julieanne van Zyl1 and Dan Corbett2 Abstract. A framework recently developed for understanding and “a body of knowledge about the world (or a domain) that a) is classifying ontology applications provides opportunities to review a repository of primitive symbols used in meaning the state of the art, and to provide guidelines for application b) organises these symbols in a tangled subsumption developers from different communities [1]. The framework hierarchy; and identifies four main categories of ontology applications: neutral c) further interconnects these symbols using a rich system of authoring, ontology as specification, common access to semantic and discourse-pragmatic relations defined among information, and ontology-based search. Specific scenarios are the concepts” [2]. described for each category and a number of features have been identified to highlight the similarities and differences between There has been some work on comparing ontology applications, them. In this paper we identify additional scenarios, describing the which refer to “the application that makes use of or benefits from use of a linguistic ontology in an application. We populate the the ontology (possibly directly)” [1]. A framework [3] was scenarios with a number of prominent research and industrial developed for comparing various projects in ontology design, applications from diverse communities such as knowledge-based which considered the differences and similarities in the way the machine translation, medical databases, heterogenous information projects treat some basic knowledge representation aspects. The systems integration, multilingual text generation, Web-based projects compared include three natural language ontologies, two applications, and information retrieval. -
A Survey of Top-Level Ontologies to Inform the Ontological Choices for a Foundation Data Model
A survey of Top-Level Ontologies To inform the ontological choices for a Foundation Data Model Version 1 Contents 1 Introduction and Purpose 3 F.13 FrameNet 92 2 Approach and contents 4 F.14 GFO – General Formal Ontology 94 2.1 Collect candidate top-level ontologies 4 F.15 gist 95 2.2 Develop assessment framework 4 F.16 HQDM – High Quality Data Models 97 2.3 Assessment of candidate top-level ontologies F.17 IDEAS – International Defence Enterprise against the framework 5 Architecture Specification 99 2.4 Terminological note 5 F.18 IEC 62541 100 3 Assessment framework – development basis 6 F.19 IEC 63088 100 3.1 General ontological requirements 6 F.20 ISO 12006-3 101 3.2 Overarching ontological architecture F.21 ISO 15926-2 102 framework 8 F.22 KKO: KBpedia Knowledge Ontology 103 4 Ontological commitment overview 11 F.23 KR Ontology – Knowledge Representation 4.1 General choices 11 Ontology 105 4.2 Formal structure – horizontal and vertical 14 F.24 MarineTLO: A Top-Level 4.3 Universal commitments 33 Ontology for the Marine Domain 106 5 Assessment Framework Results 37 F. 25 MIMOSA CCOM – (Common Conceptual 5.1 General choices 37 Object Model) 108 5.2 Formal structure: vertical aspects 38 F.26 OWL – Web Ontology Language 110 5.3 Formal structure: horizontal aspects 42 F.27 ProtOn – PROTo ONtology 111 5.4 Universal commitments 44 F.28 Schema.org 112 6 Summary 46 F.29 SENSUS 113 Appendix A F.30 SKOS 113 Pathway requirements for a Foundation Data F.31 SUMO 115 Model 48 F.32 TMRM/TMDM – Topic Map Reference/Data Appendix B Models 116 ISO IEC 21838-1:2019 -
How to Keep a Knowledge Base Synchronized with Its Encyclopedia Source
Proceedings of the Twenty-Sixth International Joint Conference on Artificial Intelligence (IJCAI-17) How to Keep a Knowledge Base Synchronized with Its Encyclopedia Source Jiaqing Liang12, Sheng Zhang1, Yanghua Xiao134∗ 1School of Computer Science, Shanghai Key Laboratory of Data Science Fudan University, Shanghai, China 2Shuyan Technology, Shanghai, China 3Shanghai Internet Big Data Engineering Technology Research Center, China 4Xiaoi Research, Shanghai, China [email protected], fshengzhang16,[email protected] Abstract However, most of these knowledge bases tend to be out- dated, which limits their utility. For example, in many knowl- Knowledge bases are playing an increasingly im- edge bases, Donald Trump is only a business man even af- portant role in many real-world applications. How- ter the inauguration. Obviously, it is important to let ma- ever, most of these knowledge bases tend to be chines know that Donald Trump is the president of the United outdated, which limits the utility of these knowl- States so that they can understand that the topic of an arti- edge bases. In this paper, we investigate how to cle mentioning Donald Trump is probably related to politics. keep the freshness of the knowledge base by syn- Moreover, new entities are continuously emerging and most chronizing it with its data source (usually ency- of them are popular, such as iphone 8. However, it is hard for clopedia websites). A direct solution is revisiting a knowledge base to cover these entities in time even if the the whole encyclopedia periodically and rerun the encyclopedia websites have already covered them. entire pipeline of the construction of knowledge freshness base like most existing methods. -
Functions in Basic Formal Ontology
Applied Ontology 11 (2016) 103–128 103 DOI 10.3233/AO-160164 IOS Press Functions in Basic Formal Ontology Andrew D. Spear a,∗, Werner Ceusters b and Barry Smith c a Philosophy Department, Grand Valley State University, 1 Campus Drive, Allendale, MI 49401, USA Tel.: +1 616 331 2847; Fax: +1 616 331 2601; E-mail: [email protected] b Departments of Biomedical Informatics and Psychiatry, University at Buffalo, 77 Goodell street, Buffalo, NY 14203, USA E-mail: [email protected] c Department of Philosophy, University at Buffalo, 135 Park Hall, Buffalo, NY 14260, USA E-mail: [email protected] Abstract. The notion of function is indispensable to our understanding of distinctions such as that between being broken and being in working order (for artifacts) and between being diseased and being healthy (for organisms). A clear account of the ontology of functions and functioning is thus an important desideratum for any top-level ontology intended for application to domains such as engineering or medicine. The benefit of using top-level ontologies in applied ontology can only be realized when each of the categories identified and defined by a top-level ontology is integrated with the others in a coherent fashion. Basic Formal Ontology (BFO) has from the beginning included function as one of its categories, exploiting a version of the etiological account of function that is framed at a level of generality sufficient to accommodate both biological and artifactual functions. This account has been subjected to a series of criticisms and refinements. We here articulate BFO’s account of function, provide some reasons for favoring it over competing views, and defend it against objections. -
Learning Ontologies from RDF Annotations
/HDUQLQJÃRQWRORJLHVÃIURPÃ5')ÃDQQRWDWLRQV $OH[DQGUHÃ'HOWHLOÃ&DWKHULQHÃ)DURQ=XFNHUÃ5RVHÃ'LHQJ ACACIA project, INRIA, 2004, route des Lucioles, B.P. 93, 06902 Sophia Antipolis, France {Alexandre.Delteil, Catherine.Faron, Rose.Dieng}@sophia.inria.fr $EVWUDFW objects, as in [Mineau, 1990; Carpineto and Romano, 1993; Bournaud HWÃDO., 2000]. In this paper, we present a method for learning Since all RDF annotations are gathered inside a common ontologies from RDF annotations of Web RDF graph, the problem which arises is the extraction of a resources by systematically generating the most description for a given resource from the whole RDF graph. specific generalization of all the possible sets of After a brief description of the RDF data model (Section 2) resources. The preliminary step of our method and of RDF Schema (Section 3), Section 4 presents several consists in extracting (partial) resource criteria for extracting partial resource descriptions. In order descriptions from the whole RDF graph gathering to deal with the intrinsic complexity of the building of a all the annotations. In order to deal with generalization hierarchy, we propose an incremental algorithmic complexity, we incrementally build approach by gradually increasing the size of the descriptions the ontology by gradually increasing the size of the resource descriptions we consider. we consider. The principle of the approach is explained in Section 5 and more deeply detailed in Section 6. Ã ,QWURGXFWLRQ Ã 7KHÃ5')ÃGDWDÃPRGHO The Semantic Web, expected to be the next step that will RDF is the emerging Web standard for annotating resources lead the Web to its full potential, will be based on semantic HWÃDO metadata describing all kinds of Web resources. -
A Translation Approach to Portable Ontology Specifications
Knowledge Systems Laboratory September 1992 Technical Report KSL 92-71 Revised April 1993 A Translation Approach to Portable Ontology Specifications by Thomas R. Gruber Appeared in Knowledge Acquisition, 5(2):199-220, 1993. KNOWLEDGE SYSTEMS LABORATORY Computer Science Department Stanford University Stanford, California 94305 A Translation Approach to Portable Ontology Specifications Thomas R. Gruber Knowledge System Laboratory Stanford University 701 Welch Road, Building C Palo Alto, CA 94304 [email protected] Abstract To support the sharing and reuse of formally represented knowledge among AI systems, it is useful to define the common vocabulary in which shared knowledge is represented. A specification of a representational vocabulary for a shared domain of discourse — definitions of classes, relations, functions, and other objects — is called an ontology. This paper describes a mechanism for defining ontologies that are portable over representation systems. Definitions written in a standard format for predicate calculus are translated by a system called Ontolingua into specialized representations, including frame-based systems as well as relational languages. This allows researchers to share and reuse ontologies, while retaining the computational benefits of specialized implementations. We discuss how the translation approach to portability addresses several technical problems. One problem is how to accommodate the stylistic and organizational differences among representations while preserving declarative content. Another is how -
Artificial Intelligence
BROAD AI now and later Michael Witbrock, PhD University of Auckland Broad AI Lab @witbrock Aristotle (384–322 BCE) Organon ROOTS OF AI ROOTS OF AI Santiago Ramón y Cajal (1852 -1934) Cerebral Cortex WHAT’S AI • OLD definition: AI is everything we don’t yet know how program • Now some things that people can’t do: • unique capabilities (e.g. Style transfer) • superhuman performance (some areas of speech, vision, games, some QA, etc) • Current AI Systems can be divided by their kind of capability: • Skilled (Image recognition, Game Playing (Chess, Atari, Go, DoTA), Driving) • Attentive (Trading: Aidyia; Senior Care: CareMedia, Driving) • Knowledgeable, (Google Now, Siri, Watson, Cortana) • High IQ (Cyc, Soar, Wolfram Alpha) GOFAI • Thought is symbol manipulation • Large numbers of precisely defined symbols (terms) • Based on mathematical logic (implies (and (isa ?INST1 LegalAgreement) (agreeingAgents ?INST1 ?INST2)) (isa ?INST2 LegalAgent)) • Problems solved by searching for transformations of symbolic representations that lead to a solution Slow Development Thinking Quickly Thinking Slowly (System I) (System II) Human Superpower c.f. other Done well by animals and people animals Massively parallel algorithms Serial and slow Done poorly until now by computers Done poorly by most people Not impressive to ordinary people Impressive (prizes, high pay) "Sir, an animal’s reasoning is like a dog's walking on his hind legs. It is not done well; but you are surprised to find it done at all.“ - apologies to Samuel Johnson Achieved on computers by high- Fundamental design principle of power, low density, slow computers simulation of vastly different Computer superpower c.f. neural hardware human Recurrent Deep Learning & Deep Reasoning MACHINE LEARNING • Meaning is implicit in the data • Thought is the transformation of learned representations http://karpathy.github.io/2015/05/21/rnn- effectiveness/ . -
Semantic Web Foundations for Representing, Reasoning, and Traversing Contextualized Knowledge Graphs
Wright State University CORE Scholar Browse all Theses and Dissertations Theses and Dissertations 2017 Semantic Web Foundations for Representing, Reasoning, and Traversing Contextualized Knowledge Graphs Vinh Thi Kim Nguyen Wright State University Follow this and additional works at: https://corescholar.libraries.wright.edu/etd_all Part of the Computer Engineering Commons, and the Computer Sciences Commons Repository Citation Nguyen, Vinh Thi Kim, "Semantic Web Foundations for Representing, Reasoning, and Traversing Contextualized Knowledge Graphs" (2017). Browse all Theses and Dissertations. 1912. https://corescholar.libraries.wright.edu/etd_all/1912 This Dissertation is brought to you for free and open access by the Theses and Dissertations at CORE Scholar. It has been accepted for inclusion in Browse all Theses and Dissertations by an authorized administrator of CORE Scholar. For more information, please contact [email protected]. Semantic Web Foundations for Representing, Reasoning, and Traversing Contextualized Knowledge Graphs A dissertation submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy By VINH THI KIM NGUYEN B.E., Vietnam National University, 2007 2017 Wright State University WRIGHT STATE UNIVERSITY GRADUATE SCHOOL December 15, 2017 I HEREBY RECOMMEND THAT THE THESIS PREPARED UNDER MY SUPERVISION BY Vinh Thi Kim Nguyen ENTITLED Semantic Web Foundations of Representing, Reasoning, and Traversing in Contextualized Knowledge Graphs BE ACCEPTED IN PARTIAL FUL- FILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF Doctor of Philosophy. Amit Sheth, Ph.D. Dissertation Director Michael Raymer, Ph.D. Director, Computer Science and Engineering Ph.D. Program Barry Milligan, Ph.D. Interim Dean of the Graduate School Committee on Final Examination Amit Sheth, Ph.D. -
Knowledge Graphs on the Web – an Overview Arxiv:2003.00719V3 [Cs
January 2020 Knowledge Graphs on the Web – an Overview Nicolas HEIST, Sven HERTLING, Daniel RINGLER, and Heiko PAULHEIM Data and Web Science Group, University of Mannheim, Germany Abstract. Knowledge Graphs are an emerging form of knowledge representation. While Google coined the term Knowledge Graph first and promoted it as a means to improve their search results, they are used in many applications today. In a knowl- edge graph, entities in the real world and/or a business domain (e.g., people, places, or events) are represented as nodes, which are connected by edges representing the relations between those entities. While companies such as Google, Microsoft, and Facebook have their own, non-public knowledge graphs, there is also a larger body of publicly available knowledge graphs, such as DBpedia or Wikidata. In this chap- ter, we provide an overview and comparison of those publicly available knowledge graphs, and give insights into their contents, size, coverage, and overlap. Keywords. Knowledge Graph, Linked Data, Semantic Web, Profiling 1. Introduction Knowledge Graphs are increasingly used as means to represent knowledge. Due to their versatile means of representation, they can be used to integrate different heterogeneous data sources, both within as well as across organizations. [8,9] Besides such domain-specific knowledge graphs which are typically developed for specific domains and/or use cases, there are also public, cross-domain knowledge graphs encoding common knowledge, such as DBpedia, Wikidata, or YAGO. [33] Such knowl- edge graphs may be used, e.g., for automatically enriching data with background knowl- arXiv:2003.00719v3 [cs.AI] 12 Mar 2020 edge to be used in knowledge-intensive downstream applications. -
A Definition of Ontological Category
Two Demarcation Problems In Ontology Pawel Garbacz Department of Philosophy John Paul II Catholic University of Lublin, Poland Abstract his or her research interests. Or if not, then everything goes into the scope. In this paper I will attempt to characterise the difference be- This paper is then about the proper subject matter of ap- tween ontological and non-ontological categories for the sake of a better understanding of the subject matter of ontology. plied ontology. I will attempt to draw a demarcation line My account of ontological categories defines them as equiva- between ontological and non-ontological categories. To this lence classes of a certain family of equivalence relations that end I will search for the proper level of generality of the lat- are determined by ontological relations. As a result, the de- ter by looking at how philosophical ontology defines its sub- marcation problem for ontological categories turns out to be ject matter. I will discuss a number of attempts to capture the dependent on the demarcation problem for ontological rela- specific nature of the ontological categories, as they are used tions. in philosophy, and on the basis of this survey I outline my own proposal. The main point of my contribution is the idea Introduction that ontological categories are the most general categories that cut the reality at its joints, where cutting is provided There are a lot of ontologies out there. (Ding et al., 2005) by ontological relations. In consequence it will turn out that claim to harvest from the Internet more than 300 000 Se- this account depends on how one can draw a demarcation mantic Web documents, of which 1.5% may be unique on- line between ontological and non-ontological relations.