Supplementary Information Mitochondrial dynamics quantitatively revealed by STED nanoscopy with an enhanced squaraine variant probe Xusan Yang1,3, Ɨ, Zhigang Yang2, Ɨ, *, Ying He2, Chunyan Shan4, Wei Yan2, Zhaoyang Wu1, Peiyuan Chai4, Junlin Teng4, Junle Qu2, *, Peng Xi1, * 1 Department of biomedical engineering, College of engineering, Peking University, Beijing, 100871, China 2 Key laboratory of optoelectronic devices and systems of ministry of education and Guangdong province, College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen, 518060, China 3 School of applied and engineering physics, Cornell University, Ithaca, 14853, United States 4 School of life Sciences, Peking University, Beijing, 100871, China *Email:
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[email protected] Ɨ These authors contributed equally to this work Supplementary Figures Supplementary Figure 1 Co-localization experiment employing MitoTracker Green (Rhodamine 123) as golden standard for mitochondrial marker. The first column, DIC image; the second column, ER- Lyso- and Mito-Tracker green labeled HeLa cells; c, g the third column, enhanced squaraine dye labeled HeLa cells; the fourth column, merged images; the fifth column, Pearson’s coefficients, excitation wavelength: Rhodamine 123, Lyso- and ER- trackers (488 nm), MitoESq-635 (633 -nm), detect range of Rhodamine 123 Lyso- and ER-trackers (500-560 nm); MitoESq-635 (640-800 nm), Scale bar, 10 μm. From Supplementary Figure 1-3, it can be demonstrated that MitoESq-635 can preferentially target for mitochondria in live cells. HeLa cells were subjected to incubating with Mito-, Lyso-, ER- trackers and MitoESq-635, respectively. From the confocal imaging results obtained by a Leica SP8 confocal Laser scanning microscope, the probe revealed the best overlapping imaging with Mitotracker (Rho123).