Drug Discovery for Polycystic Kidney Disease
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Autosomal Dominant Medullary Cystic Kidney Disease (ADMCKD)
Autosomal Dominant Medullary Cystic Kidney Disease (ADMCKD) Author: Doctor Antonio Amoroso1 Creation Date: June 2001 Scientific Editor: Professor Francesco Scolari 1Servizio Genetica e Cattedra di Genetica, Istituto per l'infanzia burlo garofolo, Via dell'Istria 65/1, 34137 Trieste, Italy. [email protected] Abstract Keywords Disease name Synonyms Diagnostic criteria Differential diagnosis Prevalence Clinical description Management Etiology Genetic counseling References Abstract Autosomal dominant medullary cystic kidney disease (ADMCKD) belongs, together with nephronophthisis (NPH), to a heterogeneous group of inherited tubulo-interstitial nephritis, termed NPH-MCKD complex. The disorder, usually first seen clinically at an average age of 28 years, is characterized by structural defects in the renal tubules, leading to a reduction of the urine–concentrating ability and decreased sodium conservation. Clinical onset and course of ADMCKD are insidious. The first sign is reduced urine– concentrating ability. Clinical symptoms appear when the urinary concentrating ability is markedly reduced, producing polyuria. Later in the course, the clinical findings reflect the progressive renal insufficiency (anemia, metabolic acidosis and uremic symptoms). End-stage renal disease typically occurs in the third-fifth decade of life or even later. The pathogenesis of ADMCKD is still obscure and how the underlying genetic abnormality leads to renal disease is unknown. ADMCKD is considered to be a rare disease. Until 2000, 55 affected families had been described. There is no specific therapy for ADMCKD other than correction of water and electrolyte imbalances that may occur. Dialysis followed by renal transplantation is the preferred approach for end-stage renal failure. Keywords Autosomal dominant medullary cystic disease, medullary cysts, nephronophthisis, tubulo-interstitial nephritis Disease name Diagnostic criteria Autosomal dominant medullary cystic kidney The renal presentation of MCKD is relatively disease (ADMCKD) non-specific. -
Cryo-EM Structure of the Polycystic Kidney Disease-Like Channel PKD2L1
ARTICLE DOI: 10.1038/s41467-018-03606-0 OPEN Cryo-EM structure of the polycystic kidney disease-like channel PKD2L1 Qiang Su1,2,3, Feizhuo Hu1,3,4, Yuxia Liu4,5,6,7, Xiaofei Ge1,2, Changlin Mei8, Shengqiang Yu8, Aiwen Shen8, Qiang Zhou1,3,4,9, Chuangye Yan1,2,3,9, Jianlin Lei 1,2,3, Yanqing Zhang1,2,3,9, Xiaodong Liu2,4,5,6,7 & Tingliang Wang1,3,4,9 PKD2L1, also termed TRPP3 from the TRPP subfamily (polycystic TRP channels), is involved 1234567890():,; in the sour sensation and other pH-dependent processes. PKD2L1 is believed to be a non- selective cation channel that can be regulated by voltage, protons, and calcium. Despite its considerable importance, the molecular mechanisms underlying PKD2L1 regulations are largely unknown. Here, we determine the PKD2L1 atomic structure at 3.38 Å resolution by cryo-electron microscopy, whereby side chains of nearly all residues are assigned. Unlike its ortholog PKD2, the pore helix (PH) and transmembrane segment 6 (S6) of PKD2L1, which are involved in upper and lower-gate opening, adopt an open conformation. Structural comparisons of PKD2L1 with a PKD2-based homologous model indicate that the pore domain dilation is coupled to conformational changes of voltage-sensing domains (VSDs) via a series of π–π interactions, suggesting a potential PKD2L1 gating mechanism. 1 Ministry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing 100084, China. 2 School of Life Sciences, Tsinghua University, Beijing 100084, China. 3 Beijing Advanced Innovation Center for Structural Biology, Tsinghua University, Beijing 100084, China. 4 School of Medicine, Tsinghua University, Beijing 100084, China. -
Renal Cystic Disorders Infosheet 6-14-19
Next Generation Sequencing Panel for Renal Cystic Disorders Clinical Features: Renal cystic diseases are a genetically heterogeneous group of conditions characterized By isolated renal disease or renal cysts in conjunction with extrarenal features (1). Age of onset of renal cystic disease ranges from neonatal to adult onset. Common features of renal cystic diseases include renal insufficiency and progression to end stage renal disease (ESRD). Identification of the genetic etiology of renal cystic disease can aid in appropriate clinical management of the affected patient. Our Renal Cystic Disorders Panel includes sequence and deletion/duplicaton analysis of all 79 genes listed below. Renal Cystic Disorders Sequencing Panel AHI1 BMPER HNF1B NEK8 TCTN3 WDPCP ANKS6 C5orf42 IFT27 NOTCH2 TFAP2A WDR19 ARL13B CC2D2A IFT140 NPHP1 TMEM107 XPNPEP3 ARL6 CDC73 IFT172 NPHP3 TMEM138 ZNF423 B9D1 CEP104 INPP5E NPHP4 TMEM216 B9D2 CEP120 INVS OFD1 TMEM231 BBIP1 CEP164 IQCB1 PDE6D TMEM237 BBS1 CEP290 JAG1 PKD2 TMEM67 BBS10 CEP41 KIAA0556 PKHD1 TRIM32 BBS12 CEP83 KIAA0586 REN TSC1 BBS2 CRB2 KIF14 RPGRIP1L TSC2 BBS4 CSPP1 KIF7 SALL1 TTC21B BBS5 DCDC2 LZTFL1 SDCCAG8 TTC8 BBS7 GLIS2 MKKS TCTN1 UMOD BBS9 GLIS3 MKS1 TCTN2 VHL Disorder Genes Inheritance Clinical features/molecular genetics Bardet Biedl ARL6 AR Bardet-Biedl syndrome (BBS) is an autosomal syndrome BBS1 recessive multi-systemic ciliopathy characterized By BBS10 retinal dystrophy, oBesity, postaxial polydactyly, BBS12 leaning difficulties, renal involvement and BBS2 genitourinary abnormalities (2). Visual prognosis is BBS4 poor, and the mean age of legal Blindness is 15.5 BBS5 years. Birth weight is typically normal But significant BBS7 weight gain Begins within the first year. Renal BBS9 disease is a major cause of morBidity and mortality. -
Macromolecular Assembly of Polycystin-2 Intracytosolic C-Terminal Domain
Macromolecular assembly of polycystin-2 intracytosolic C-terminal domain Frederico M. Ferreiraa,b,1, Leandro C. Oliveirac, Gregory G. Germinod, José N. Onuchicc,1, and Luiz F. Onuchica,1 aDivision of Nephrology, University of São Paulo School of Medicine, 01246-903, São Paulo, Brazil; bLaboratory of Immunology, Heart Institute, University of São Paulo School of Medicine, 05403-900, São Paulo, Brazil; cCenter for Theoretical Biological Physics, University of California at San Diego, La Jolla, CA 92093; dNational Institute of Diabetes, Digestive, and Kidney Diseases, Bethesda, MD 20892-2560 Contributed by José N. Onuchic, April 28, 2011 (sent for review March 20, 2011) Mutations in PKD2 are responsible for approximately 15% of the In spite of the aforementioned information and insights, the autosomal dominant polycystic kidney disease cases. This gene macromolecular assembly of PC2t homooligomer continued to encodes polycystin-2, a calcium-permeable cation channel whose be an open question. In the current work, we present the most C-terminal intracytosolic tail (PC2t) plays an important role in its comprehensive set of analyses yet performed and that show interaction with a number of different proteins. In the present PC2t forms a homotetrameric oligomer. We have proposed a study, we have comprehensively evaluated the macromolecular PC2 C-terminal domain delimitation and submitted it to a range assembly of PC2t homooligomer using a series of biophysical of biochemical and biophysical evaluations, including chemical and biochemical analyses. Our studies, based on a new delimitation cross-linking, dynamic light scattering (DLS), circular dichroism of PC2t, have revealed that it is capable of assembling as a homo- (CD) and small angle X-ray scattering (SAXS) analyses. -
Congenital Kidney and Urinary Tract Anomalies: a Review for Nephrologists
REVIEW ARTICLE Port J Nephrol Hypert 2018; 32(4): 385-391 • Advance Access publication 4 January 2019 Congenital kidney and urinary tract anomalies: a review for nephrologists Marina Vieira, Aníbal Ferreira, Fernando Nolasco Nephrology Department, Hospital Curry Cabral, Centro Hospitalar Lisboa Central, Lisboa, Portugal Received for publication: Sep 7, 2018 Accepted in revised form: Dec 7, 2018 ABSTRACT Kidney and urinary tract development disorder are two of the most prevalent congenital malformations and the main cause of chronic kidney disease in pediatric age patients. As such, it is very important that the neph‑ rologist understands these pathologies to improve transition and ensure a good continuity between pediatric and adult nephrological care. The purpose of this article is to present a brief review of congenital anomalies of the kidney and urinary tract (CAKUT). Kidney malformations are classified according to macroscopic and microscopic anatomic features, and are the result of the following abnormal renal developmental processes: malformations of the renal parenchyma, abnor‑ malities of the embryonic migration of the kidneys and abnormalities of the developing urinary collecting system. Keys words: congenital anomalies of the kidneys and urinary tract, dysplasia, ciliopathies, posterior urethral valves, vesicoureteral reflux. INTRODUCTION are more likely to require dialysis6. Kidney malforma‑ tions are classified according to macroscopic and micro‑ Kidney and urinary tract development disorders scopic anatomic features, and -
Data-Driven Analysis of TRP Channels in Cancer
CANCER GENOMICS & PROTEOMICS 13 : 83-90 (2016) Data-driven Analysis of TRP Channels in Cancer: Linking Variation in Gene Expression to Clinical Significance YU RANG PARK 1* , JUNG NYEO CHUN 2* , INSUK SO 2, HWA JUNG KIM 3, SEUNGHEE BAEK 4, JU-HONG JEON 2 and SOO-YONG SHIN 1,5 1Office of Clinical Research Information, and Departments of 3Clinical Epidemiology and Biostatistics, and 5Biomedical Informatics, Asan Medical Center, Seoul, Republic of Korea; 2Department of Physiology and Biomedical Sciences, Institute of Human-Environment Interface Biology, Seoul National University College of Medicine, Seoul, Republic of Korea; 4Department of Preventive Medicine, University of Ulsan College of Medicine, Seoul, Republic of Korea Abstract. Background: Experimental evidence has intracellular Ca 2+ in response to various internal and external suggested that transient receptor potential (TRP) channels stimuli (1, 2). In human, the TRP channel superfamily play a crucial role in tumor biology. However, clinical consists of 27 isotypes that are classified into six subfamilies relevance and significance of TRP channels in cancer remain (3): canonical (TRPC), vanilloid (TRPV), melastatin (TRPM), largely unknown. Materials and Methods: We applied a data- polycystin (TRPP), mucolipin (TRPML), and ankyrin driven approach to dissect the expression landscape of 27 (TRPA). Emerging evidence has shown that the aberrant TRP channel genes in 14 types of human cancer using functions of TRP channels are closely associated with cancer International Cancer Genome Consortium data. Results: hallmarks, such as sustaining proliferative signaling, evading TRPM2 was found overexpressed in most tumors, whereas growth suppressors, resisting cell death, and activating TRPM3 was broadly down-regulated. TRPV4 and TRPA1 invasion and metastasis (4, 5). -
Antenatal Diagnosis of Renal Tract Abnormalities and What I Tell My Patients
Antenatal diagnosis of renal tract abnormalities and what I tell my patients Dr Lucy Kean Consultant fetal and maternal medicine Nottingham University Hospitals Referral groups • Previously affected pregnancy • Almost anything! • Family history • Dysplasia • Cystic disease • Sometimes severe reflux • Scan findings (largest group) • Can be anything at any gestation from 11 weeks when the first scan is usually performed What is visible and when? . • Fetal kidneys begin to function after 12 weeks • Bladder usually visible from 12 weeks and major obstruction can be visible at this stage • By 14 weeks urine output takes over amniotic fluid production • By 16 weeks urine output is such that upper renal tract obstruction can begin to cause problems and be visible • Nephrogenesis continues to term, so dysplasia can worsen during fetal life • Posterior urethral valves can present late 12-14 weeks • Bladder outflow obstruction/megacystis Lower urinary tract obstruction – Associations • Associated anomalies are common and include: – posterior urethral valves – Urethral agenesis – chromosomal anomalies – At 10-14 weeks – if the longitudinal bladder diameter is 7-15 mm risk of chromosomal defects ~25% • microcolon intestinal hypoperistalsis (MMIH) syndrome (Berdon syndrome) • megacystis megaureter syndrome • prune belly syndrome Treatment and prognosis: What do I tell patients? • A karyotype should be considered (CVS) • Prognosis can be variable. It can completely resolve or lead to progressive obstruction • A follow-up ultrasound is necessary • If the fetus is chromosomally normal – spontaneous resolution in about 90% if he bladder diameter is 7-15 mm – if the bladder diameter is >15 mm there is a very high likelihood of progressive obstructive uropathy • Management will depend on the whole clinical picture – Liquor volume – Other findings • Vesicoamniotic shunting may improve survival in severe cases, but survival with normal renal function is rare. -
The Heteromeric PC-1/PC-2 Polycystin Complex Is Activated by the PC-1 N-Terminus
RESEARCH ARTICLE The heteromeric PC-1/PC-2 polycystin complex is activated by the PC-1 N-terminus Kotdaji Ha1, Mai Nobuhara1, Qinzhe Wang2, Rebecca V Walker3, Feng Qian3, Christoph Schartner1, Erhu Cao2, Markus Delling1* 1Department of Physiology, University of California, San Francisco, San Francisco, United States; 2Department of Biochemistry, University of Utah School of Medicine, Salt Lake City, United States; 3Division of Nephrology, Department of Medicine, University of Maryland School of Medicine, Baltimore, United States Abstract Mutations in the polycystin proteins, PC-1 and PC-2, result in autosomal dominant polycystic kidney disease (ADPKD) and ultimately renal failure. PC-1 and PC-2 enrich on primary cilia, where they are thought to form a heteromeric ion channel complex. However, a functional understanding of the putative PC-1/PC-2 polycystin complex is lacking due to technical hurdles in reliably measuring its activity. Here we successfully reconstitute the PC-1/PC-2 complex in the plasma membrane of mammalian cells and show that it functions as an outwardly rectifying channel. Using both reconstituted and ciliary polycystin channels, we further show that a soluble fragment generated from the N-terminal extracellular domain of PC-1 functions as an intrinsic agonist that is necessary and sufficient for channel activation. We thus propose that autoproteolytic cleavage of the N-terminus of PC-1, a hotspot for ADPKD mutations, produces a soluble ligand in vivo. These findings establish a mechanistic framework for understanding the role of PC-1/PC-2 heteromers in ADPKD and suggest new therapeutic strategies that would expand upon the limited symptomatic treatments currently available for this progressive, terminal disease. -
Opening TRPP2 (PKD2L1) Requires the Transfer of Gating Charges
Opening TRPP2 (PKD2L1) requires the transfer of gating charges Leo C. T. Nga, Thuy N. Viena, Vladimir Yarov-Yarovoyb, and Paul G. DeCaena,1 aDepartment of Pharmacology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611; and bDepartment of Physiology and Membrane Biology, University of California, Davis, CA 95616 Edited by Richard W. Aldrich, The University of Texas at Austin, Austin, TX, and approved June 19, 2019 (received for review February 18, 2019) The opening of voltage-gated ion channels is initiated by transfer their ligands (exogenous or endogenous) is sufficient to initiate of gating charges that sense the electric field across the mem- channel opening. Although TRP channels share a similar to- brane. Although transient receptor potential ion channels (TRP) pology with most VGICs, few are intrinsically voltage gated, and are members of this family, their opening is not intrinsically linked most do not have gating charges within their VSD-like domains to membrane potential, and they are generally not considered (16). Current conducted by TRP family members is often rectifying, voltage gated. Here we demonstrate that TRPP2, a member of the but this form of voltage dependence is usually attributed to divalent polycystin subfamily of TRP channels encoded by the PKD2L1 block or other conditional effects (17, 18). There are 3 members of gene, is an exception to this rule. TRPP2 borrows a biophysical riff the polycystin subclass: TRPP1 (PKD2 or polycystin-2), TRPP2 from canonical voltage-gated ion channels, using 2 gating charges (PKD2-L1 or polycystin-L), and TRPP3 (PKD2-L2). TRPP1 is the found in its fourth transmembrane segment (S4) to control its con- founding member of this family, and variants in the PKD2 gene ductive state. -
Function and Regulation of Polycystin-2 and Epithelial Sodium Channel
Function and Regulation of Polycystin-2 and Epithelial Sodium Channel by Qian Wang A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Physiology University of Alberta © Qian Wang, 2016 ABSTRACT Polycystin-2, encoded by the PKD2 gene, is mutated in ~15% of autosomal dominant polycystic kidney disease, and functions as a Ca2+ permeable non-selective cation channel. It is mainly localized on the endoplasmic reticulum membrane, and is also present on the plasma membrane and primary cilium. Polycystin-2 is critical for cellular homeostasis and thus a tight regulation of its expression and function is needed. In Chapter 2, filamin-A, a large cytoskeletal actin-binding protein, was identified as a novel polycystin-2 binding partner. Their physical interaction was confirmed by different molecular biology techniques, e.g., yeast two-hybrid, GST pull-down, and co-immunoprecipitation. Filamin-A C terminal fragment (FLNAC) mediates the interaction with both N- and C- termini of polycystin-2. Functional study in lipid bilayer reconstitution system showed that filamin substantially inhibits polycystin-2 channel activity. This study indicates that filamin is an important regulator of polycystin-2 channel function, and further links actin cytoskeletal dynamics to the regulation of this channel. In Chapter 3, further effect of filamin on polycystin-2 stability was studied using filamin-deficient and filamin-A replete human melanoma cells, as well other human cell lines together with filamin-A siRNA/shRNA knockdown. Filamin-A was found to repress polycystin-2 degradation and enhance its total expression and plasma membrane targeting. -
Congenital Anomalies Surveillance 2013-2014
NHS Greater Glasgow & Clyde CONGENITAL ANOMALIES SURVEILLANCE 2013-2014 REVIEW OF DATA RELATING TO CONGENITAL ANOMALIES DETECTED IN NHS GG&C BETWEEN 1 ST APRIL 2013 AND 31ST MARCH 2014 Dr. James Robins Source data provided by Hilary Jordan of Information Services Final 18th October 2014 Congenital Anomalies Report 2013-2014 Table of Contents Definitions ............................................................................................................................................... 5 Links to Previous Reports ........................................................................................................................ 6 GG&C Congenital Anomaly Report for 2012-2013 ............................................................................. 6 GG&C Congenital Anomaly Report for 2011-2012 ............................................................................. 6 1. Core Data ............................................................................................................................................ 7 1.1. Case based review........................................................................................................................ 7 1.2. Abnormality based review ......................................................................................................... 10 1.3. Maternal Age ............................................................................................................................. 11 1.4. Gender ...................................................................................................................................... -
Beyond Water Homeostasis: Diverse Functional Roles of Mammalian Aquaporins Philip Kitchena, Rebecca E. Dayb, Mootaz M. Salmanb
CORE Metadata, citation and similar papers at core.ac.uk Provided by Aston Publications Explorer © 2015, Elsevier. Licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International http://creativecommons.org/licenses/by-nc-nd/4.0/ Beyond water homeostasis: Diverse functional roles of mammalian aquaporins Philip Kitchena, Rebecca E. Dayb, Mootaz M. Salmanb, Matthew T. Connerb, Roslyn M. Billc and Alex C. Connerd* aMolecular Organisation and Assembly in Cells Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, UK bBiomedical Research Centre, Sheffield Hallam University, Howard Street, Sheffield S1 1WB, UK cSchool of Life & Health Sciences and Aston Research Centre for Healthy Ageing, Aston University, Aston Triangle, Birmingham, B4 7ET, UK dInstitute of Clinical Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK * To whom correspondence should be addressed: Alex C. Conner, School of Clinical and Experimental Medicine, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK. 0044 121 415 8809 ([email protected]) Keywords: aquaporin, solute transport, ion transport, membrane trafficking, cell volume regulation The abbreviations used are: GLP, glyceroporin; MD, molecular dynamics; SC, stratum corneum; ANP, atrial natriuretic peptide; NSCC, non-selective cation channel; RVD/RVI, regulatory volume decrease/increase; TM, transmembrane; ROS, reactive oxygen species 1 Abstract BACKGROUND: Aquaporin (AQP) water channels are best known as passive transporters of water that are vital for water homeostasis. SCOPE OF REVIEW: AQP knockout studies in whole animals and cultured cells, along with naturally occurring human mutations suggest that the transport of neutral solutes through AQPs has important physiological roles. Emerging biophysical evidence suggests that AQPs may also facilitate gas (CO2) and cation transport.