The Personalized Medicine Report
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Integrative Analysis of Exogenous, Endogenous, Tumour and Immune
Gut Online First, published on February 6, 2018 as 10.1136/gutjnl-2017-315537 Recent advances in basic science Integrative analysis of exogenous, endogenous, Gut: first published as 10.1136/gutjnl-2017-315537 on 6 February 2018. Downloaded from tumour and immune factors for precision medicine Shuji Ogino,1,2,3,4 Jonathan A Nowak,1 Tsuyoshi Hamada,2 Amanda I Phipps,5,6 Ulrike Peters,5,6 Danny A Milner Jr,7 Edward L Giovannucci,3,8,9 Reiko Nishihara,1,3,4,8,10 Marios Giannakis,4,11,12 Wendy S Garrett,4,11,13 Mingyang Song8,14,15 For numbered affiliations see ABSTRACT including inflammatory and immune cells. A fraction end of article. Immunotherapy strategies targeting immune checkpoints of somatic mutations may result in the generation of such as the CTLA4 and CD274 (programmed cell death new antigens (neoantigens) that can be recognised as Correspondence to 1 ligand 1, PD-L1)/PDCD1 (programmed cell death 1, non-self by the immune system. During an individu- Dr Shuji Ogino, Program in MPE Molecular Pathological PD-1) T-cell coreceptor pathways are revolutionising al's life-course, cells may acquire somatic molecular Epidemiology, Brigham and oncology. The approval of pembrolizumab use for alterations, and some of these cells undergo clonal Women’s Hospital, Boston, MA solid tumours with high-level microsatellite instability expansion, displaying hallmarks of early neoplasia. 02215, USA; shuji_ ogino@ dfci. or mismatch repair deficiency by the US Food and Many of these cells are likely kept in check or killed harvard. edu Drug Administration highlights promise of precision by the host immune system before they can develop Received 24 October 2017 immuno-oncology. -
Preparing Pathology for Personalized Medicine: Possibilities for Improvement of the Pre-Analytical Phase
Preparing pathology for personalized medicine: possibilities for improvement of the pre-analytical phase. Patricia Jta Groenen, Willeke A Blokx, Coos Diepenbroek, Lambert Burgers, Franco Visinoni, Pieter Wesseling, Han van Krieken To cite this version: Patricia Jta Groenen, Willeke A Blokx, Coos Diepenbroek, Lambert Burgers, Franco Visinoni, et al.. Preparing pathology for personalized medicine: possibilities for improvement of the pre-analytical phase.. Histopathology, Wiley, 2011, 59 (1), pp.1. 10.1111/j.1365-2559.2010.03711.x. hal-00630795 HAL Id: hal-00630795 https://hal.archives-ouvertes.fr/hal-00630795 Submitted on 11 Oct 2011 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Histopathology Preparing pathology for personalized medicine: possibilities for improvement of the pre-analytical phase. For Peer Review Journal: Histopathology Manuscript ID: HISTOP-08-10-0429 Wiley - Manuscript type: Review Date Submitted by the 06-Aug-2010 Author: Complete List of Authors: Groenen, Patricia; Radboud University Nijmegen Medical Centre, Pathology Blokx, -
Molecular Diagnostics of Medically Important Bacterial Infections
Curr. Issues Mol. Biol. 9: 21–40. Online journal at www.cimb.org Molecular Diagnostics of Medically Important Bacterial Infections Beverley Cherie Millar1, Jiru Xu2, and John Introduction Edmund Moore1* The last ten years of the twentieth century allowed for an exponential increase in the knowledge of techniques in 1Northern Ireland Public Health Laboratory, Department molecular biology, following the cellular and protein era of Bacteriology, Belfast City Hospital, Belfast, Northern of the 1970s and 1980s. This explosion of technologies Ireland, BT9 7AD, UK from the primary discipline of molecular biology has had 2Northern Ireland Public Health Laboratory, Department major consequences and has allowed for signifcant of Bacteriology, Belfast City Hospital, Belfast, Northern developments in many areas of the life sciences, Ireland, BT9 7AD, UK, and Department of Pathogenic including bacteriology. Molecular bacteriologists are now Biology, Xian-Jiatong University, Xi’an, The People’s beginning to adopt general molecular biology techniques Republic of China to support their particular area of interest. This chapter aims to examine the current situation with regard to the Abstract application of molecular biology techniques in the area Infectious diseases are common diseases all over of medical bacteriology, and is primarily concerned the world. A recent World Health Organization report with the molecular identifcation of causal agents of indicated that infectious diseases are now the world’s bacterial infections. The chapter also aims at giving a biggest killer of children and young adults. Infectious broad overview of the application of current technology diseases in non-industrialized countries caused 45% in all so that the reader has a more comprehensive overview and 63% of death in early childhood. -
Table of Contents
ANTICANCER RESEARCH International Journal of Cancer Research and Treatment ISSN: 0250-7005 Volume 32, Number 4, April 2012 Contents Experimental Studies * Review: Multiple Associations Between a Broad Spectrum of Autoimmune Diseases, Chronic Inflammatory Diseases and Cancer. A.L. FRANKS, J.E. SLANSKY (Aurora, CO, USA)............................................ 1119 Varicella Zoster Virus Infection of Malignant Glioma Cell Cultures: A New Candidate for Oncolytic Virotherapy? H. LESKE, R. HAASE, F. RESTLE, C. SCHICHOR, V. ALBRECHT, M.G. VIZOSO PINTO, J.C. TONN, A. BAIKER, N. THON (Munich; Oberschleissheim, Germany; Zurich, Switzerland) .................................... 1137 Correlation between Adenovirus-neutralizing Antibody Titer and Adenovirus Vector-mediated Transduction Efficiency Following Intratumoral Injection. K. TOMITA, F. SAKURAI, M. TACHIBANA, H. MIZUGUCHI (Osaka, Japan) .......................................................................................................... 1145 Reduction of Tumorigenicity by Placental Extracts. A.M. MARLEAU, G. MCDONALD, J. KOROPATNICK, C.-S. CHEN, D. KOOS (Huntington Beach; Santa Barbara; Loma Linda; San Diego, CA, USA; London, ON, Canada) ...................................................................................................................................... 1153 Stem Cell Markers as Predictors of Oral Cancer Invasion. A. SIU, C. LEE, D. DANG, C. LEE, D.M. RAMOS (San Francisco, CA, USA) ................................................................................................ -
(AAV1-LPLS447X) Gene Therapy for Lipoprotein Lipase Deficiency
Gene Therapy (2013) 20, 361–369 & 2013 Macmillan Publishers Limited All rights reserved 0969-7128/13 www.nature.com/gt ORIGINAL ARTICLE Efficacy and long-term safety of alipogene tiparvovec (AAV1-LPLS447X) gene therapy for lipoprotein lipase deficiency: an open-label trial D Gaudet1,2,JMe´ thot1,2,SDe´ry1, D Brisson1,2, C Essiembre1, G Tremblay1, K Tremblay1,2, J de Wal3, J Twisk3, N van den Bulk3, V Sier-Ferreira3 and S van Deventer3 We describe the 2-year follow-up of an open-label trial (CT-AMT-011–01) of AAV1-LPLS447X gene therapy for lipoprotein lipase (LPL) deficiency (LPLD), an orphan disease associated with chylomicronemia, severe hypertriglyceridemia, metabolic complications and potentially life-threatening pancreatitis. The LPLS447X gene variant, in an adeno-associated viral vector of serotype 1 (alipogene tiparvovec), was administered to 14 adult LPLD patients with a prior history of pancreatitis. Primary objectives were to assess the long-term safety of alipogene tiparvovec and achieve a X40% reduction in fasting median plasma triglyceride (TG) at 3–12 weeks compared with baseline. Cohorts 1 (n ¼ 2) and 2 (n ¼ 4) received 3 Â 1011 gc kg À 1, and cohort 3 (n ¼ 8) received 1 Â 1012 gc kg À 1. Cohorts 2 and 3 also received immunosuppressants from the time of alipogene tiparvovec administration and continued for 12 weeks. Alipogene tiparvovec was well tolerated, without emerging safety concerns for 2 years. Half of the patients demonstrated a X40% reduction in fasting TG between 3 and 12 weeks. TG subsequently returned to baseline, although sustained LPLS447X expression and long-term changes in TG-rich lipoprotein characteristics were noted independently of the effect on fasting plasma TG. -
Personalized Medicine: Definitions, History, and Implications for the OT Profession
The Open Journal of Occupational Therapy Volume 3 Issue 4 Fall 2015 Article 1 October 2015 Personalized medicine: Definitions, history, and implications for the OT profession Diane Powers Dirette Western Michigan University - USA, [email protected] Follow this and additional works at: https://scholarworks.wmich.edu/ojot Part of the Occupational Therapy Commons Recommended Citation Dirette, D. P. (2015) "Personalized medicine: Definitions, history, and implications for the OT profession," The Open Journal of Occupational Therapy: Vol. 3: Iss. 4, Article 1. Available at: https://doi.org/10.15453/ 2168-6408.1213 This document has been accepted for inclusion in The Open Journal of Occupational Therapy by the editors. Free, open access is provided by ScholarWorks at WMU. For more information, please contact wmu- [email protected]. Personalized medicine: Definitions, history, and implications for the OT profession Keywords individualized medicine, personalized medicine, precision medicine, stratified medicine, paradigm shifts Credentials Display Diane Powers Dirette, Ph.D., OTL Copyright transfer agreements are not obtained by The Open Journal of Occupational Therapy (OJOT). Reprint permission for this Letter from the Editor should be obtained from the corresponding author(s). Click here to view our open access statement regarding user rights and distribution of this Letter from the Editor. DOI: 10.15453/2168-6408.1213 This letter from the editor is available in The Open Journal of Occupational Therapy: https://scholarworks.wmich.edu/ ojot/vol3/iss4/1 Dirette: Personalized medicine in OT That dreaded phone call comes from your treatment of leukemia, cystic fibrosis, liver cancer physician in the middle of the day informing you of (Kaiser, 2015), lung cancer (Eisenstein, 2014), the results of your biopsy that was ordered amyotrophic lateral sclerosis (Cashman & Ospri, following an abnormal mammogram. -
Current Update of Laboratory Molecular Diagnostics Advancement in Management of Colorectal Cancer (CRC)
diagnostics Review Current Update of Laboratory Molecular Diagnostics Advancement in Management of Colorectal Cancer (CRC) Siew-Wai Pang 1,*, Noel Jacques Awi 1, Subasri Armon 2 , Wendy Wan-Dee Lim 3, John Seng-Hooi Low 3, Kaik-Boo Peh 4, Suat-Cheng Peh 1,3 and Sin-Yeang Teow 1,* 1 Department of Medical Sciences, School of Healthcare and Medical Sciences, Sunway University, Jalan Universiti, Bandar Sunway, Subang Jaya 47500, Malaysia; [email protected] (N.J.A.); [email protected] (S.-C.P.) 2 Pathology Department, Hospital Kuala Lumpur, Jalan Pahang, Kuala Lumpur 50588, Malaysia; [email protected] 3 Sunway Medical Centre, Jalan Lagoon Selatan, Bandar Sunway, Subang Jaya 47500, Malaysia; [email protected] (W.W.-D.L.); [email protected] (J.S.-H.L.) 4 Mahkota Medical Centre, Mahkota Melaka, Jalan Merdeka, Melaka 75000, Malaysia; [email protected] * Correspondence: [email protected] (S.-W.P.); [email protected] (S.-Y.T.); Tel.: +60-17-621-6191 (S.-W.P.); +60-37-491-8622 (ext. 7449) (S.-Y.T.) Received: 26 September 2019; Accepted: 23 November 2019; Published: 23 December 2019 Abstract: Colorectal cancer (CRC) continues to be one of the most common cancers globally. The incidence has increased in developing countries in the past few decades, this could be partly attributed to aging populations and unhealthy lifestyles. While the treatment of CRC has seen significant improvement since the advent of target-specific therapies and personalized medicine, CRC is oftentimes detected at late or advanced stages, thereby reducing the efficacy of treatment. -
Molecular Testing of Solid Tumors
Molecular Testing of Solid Tumors Maria E Arcila MD Memorial Sloan Kettering Cancer Center New York, NY Disclosure Information • Advisory Board: Eli Lilly-ImClone Learning Objectives • After this presentation, you should be able to: – Describe the most common molecular diagnostics tests performed in the evaluation of malignant solid tumors – Have working knowledge of the Molecular markers recommended by the National Comprehensive Cancer Network (NCCN) Clinical Practice Guidelines in Oncology for common solid tumors – Recognize some of emerging molecular markers Molecular Biomarkers • Potential therapeutic targets • Provide further insight into the clinicopathologic features of cancer • Guide to treatment decisions – Predictors of response to therapy – Prognostic indicators of risk – Monitor progression or response to treatment Solid tumors where molecular diagnostics make the highest contribution • Lung • Colorectal • Brain • Breast • Sarcomas • Head and neck - Thyroid • Melanoma Lung Carcinoma MORPHOLOGIC CLASSIFICATION OF LUNG CARCINOMA (Historically used to guide treatment decisions) NSCLC • Lung cancer is the most common cause of cancer-related death in men and women • Responsible for over 1.3 million PROPORTION (%) deaths annually worldwide SQUAMOUS A NEW WAY TO LOOK AT LUNG CANCER LARGE CELL “The Lung Adenocarcinoma ADENOCARCINOMA Oncogenome” Pie chart of mutually exclusive mutations (ca 2011) MEK1 (2008) ERBB2 (2004) UNKNOWN (36%) BRAF (2002) ALK fusions (2007) KRAS(1987) NF1 (2008) EGFR (2004) Overlapping mutations: p53 (30%), -
Classification of Medicinal Drugs and Driving: Co-Ordination and Synthesis Report
Project No. TREN-05-FP6TR-S07.61320-518404-DRUID DRUID Driving under the Influence of Drugs, Alcohol and Medicines Integrated Project 1.6. Sustainable Development, Global Change and Ecosystem 1.6.2: Sustainable Surface Transport 6th Framework Programme Deliverable 4.4.1 Classification of medicinal drugs and driving: Co-ordination and synthesis report. Due date of deliverable: 21.07.2011 Actual submission date: 21.07.2011 Revision date: 21.07.2011 Start date of project: 15.10.2006 Duration: 48 months Organisation name of lead contractor for this deliverable: UVA Revision 0.0 Project co-funded by the European Commission within the Sixth Framework Programme (2002-2006) Dissemination Level PU Public PP Restricted to other programme participants (including the Commission x Services) RE Restricted to a group specified by the consortium (including the Commission Services) CO Confidential, only for members of the consortium (including the Commission Services) DRUID 6th Framework Programme Deliverable D.4.4.1 Classification of medicinal drugs and driving: Co-ordination and synthesis report. Page 1 of 243 Classification of medicinal drugs and driving: Co-ordination and synthesis report. Authors Trinidad Gómez-Talegón, Inmaculada Fierro, M. Carmen Del Río, F. Javier Álvarez (UVa, University of Valladolid, Spain) Partners - Silvia Ravera, Susana Monteiro, Han de Gier (RUGPha, University of Groningen, the Netherlands) - Gertrude Van der Linden, Sara-Ann Legrand, Kristof Pil, Alain Verstraete (UGent, Ghent University, Belgium) - Michel Mallaret, Charles Mercier-Guyon, Isabelle Mercier-Guyon (UGren, University of Grenoble, Centre Regional de Pharmacovigilance, France) - Katerina Touliou (CERT-HIT, Centre for Research and Technology Hellas, Greece) - Michael Hei βing (BASt, Bundesanstalt für Straßenwesen, Germany). -
Personalized Medicine: the Impact of Molecular Testing on Patient Care
Personalized Medicine: The Impact of Molecular Testing on Patient Care Mini-Elective Spring 2020 University Course Dates: January 17, 24, 31, February 7, 14 Fridays, 2:30-4:30 PM of Pittsburgh Maximum Students: 5 School of Class Year: MS1 and MS2 Medicine Course Directors: Simion Chiosea, MD Professor of Pathology Somak Roy, MD Assistant Professor of Pathology Contact Information: Lynn Wolkenstein 412-647-7065 [email protected] Jessica Tebbets 412-802-6797 [email protected] Registration: Betsy Nero, Office of Medical Education [email protected] Description: Personalized medicine applies knowledge of molecular data for early disease detection, targeted treatment, and detection of person’s predisposition to a particular disease. It improves diagnosis and treatment of a disease and advances effectiveness of healthcare. This mini-elective is based in the Department of Pathology and will introduce students to principles and current applications of personalized medicine. During mini-elective students will be able to observe and discuss the principles of molecular testing, become familiar with the clinical interpretation of molecular results in all areas of medicine, including oncology, neuro-oncology, endocrinology, and gastroenterology. The training will be conducted in the clinical Molecular and Genomic Pathology (MGP) laboratory, Department of Pathology, University of Pittsburgh. MGP laboratory is one of the largest laboratories in the US focused on molecular diagnostics of solid tumors. It processes over 22,000 samples each year using high-throughput technologies, such as Next Generation Sequencing (NGS) and a variety of the conventional molecular biology techniques. It performs molecular testing for all hospitals of the UPMC system and serves as reference laboratory for other medical centers across the United States. -
Encapsulation of Nedaplatin in Novel Pegylated Liposomes Increases Its Cytotoxicity and Genotoxicity Against A549 and U2OS Human Cancer Cells
pharmaceutics Article Encapsulation of Nedaplatin in Novel PEGylated Liposomes Increases Its Cytotoxicity and Genotoxicity against A549 and U2OS Human Cancer Cells 1, 2, 1 1 2, Salma El-Shafie y, Sherif Ashraf Fahmy y , Laila Ziko , Nada Elzahed , Tamer Shoeib * and Andreas Kakarougkas 1,* 1 Department of Biology, School of Sciences and Engineering, The American University in Cairo, Cairo 11835, Egypt; [email protected] (S.E.-S.); [email protected] (L.Z.); [email protected] (N.E.) 2 Department of Chemistry, School of Sciences and Engineering, The American University in Cairo, Cairo 11835 Egypt; sheriff[email protected] * Correspondence: [email protected] (T.S.); [email protected] (A.K.) These authors contribute equally to this paper. y Received: 7 April 2020; Accepted: 25 August 2020; Published: 10 September 2020 Abstract: Following the discovery of cisplatin over 50 years ago, platinum-based drugs have been a widely used and effective form of cancer therapy, primarily causing cell death by inducing DNA damage and triggering apoptosis. However, the dose-limiting toxicity of these drugs has led to the development of second and third generation platinum-based drugs that maintain the cytotoxicity of cisplatin but have a more acceptable side-effect profile. In addition to the creation of new analogs, tumor delivery systems such as liposome encapsulated platinum drugs have been developed and are currently in clinical trials. In this study, we have created the first PEGylated liposomal form of nedaplatin using thin film hydration. Nedaplatin, the main focus of this study, has been exclusively used in Japan for the treatment of non-small cell lung cancer, head and neck, esophageal, bladder, ovarian and cervical cancer. -
The Future of Precision Medicine : Potential Impacts for Health Technology Assessment
This is a repository copy of The Future of Precision Medicine : Potential Impacts for Health Technology Assessment. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/133069/ Version: Accepted Version Article: Love-Koh, James orcid.org/0000-0001-9009-5346, Peel, Alison, Rejon-Parilla, Juan Carlos et al. (6 more authors) (2018) The Future of Precision Medicine : Potential Impacts for Health Technology Assessment. Pharmacoeconomics. pp. 1439-1451. ISSN 1179-2027 https://doi.org/10.1007/s40273-018-0686-6 Reuse This article is distributed under the terms of the Creative Commons Attribution-NonCommercial (CC BY-NC) licence. This licence allows you to remix, tweak, and build upon this work non-commercially, and any new works must also acknowledge the authors and be non-commercial. You don’t have to license any derivative works on the same terms. More information and the full terms of the licence here: https://creativecommons.org/licenses/ Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ The Future of Precision Medicine: Potential Impacts for Health Technology Assessment Title: The Future of Precision Medicine: Potential Impacts for Health Technology Assessment Authors: James Love-Koh1,2, Alison Peel1, Juan Carlos Rejon-Parilla3, Kate Ennis1,4, Rosemary Lovett3, Andrea Manca2,5, Anastasia Chalkidou6, Hannah Wood1, Matthew Taylor1 1 YorK Health Economics Consortium 2 Centre for Health Economics, University of YorK 3 National Institute for Health and Care Excellence 4 Institute of Infection and Global Health, University of Liverpool 5 Luxembourg Institute of Health 6 Kings Technology Evaluation Centre Corresponding Author Details: Name: James Love-Koh Address: Centre for Health Economics, Alcuin A Block, University of York, Heslington, York, YO10 5DD, UK.