DECEMBER 2015 You Can’t Unscramble an Egg: Population Genetic Structure of Oncorhynchus mykiss in the California Central Valley Inferred from Combined Microsatellite and Single Nucleotide Polymorphism Data Devon E. Pearse*1 and John Carlos Garza1 Volume 13, Issue 4 | Article 3 doi: http://dx.doi.org/10.15447/sfews.2015v13iss4art3 addition, we evaluate introgression by both hatchery * Corresponding author:
[email protected] rainbow trout strains, which have primarily native 1 Fisheries Ecology Division, Southwest Fisheries Science Center, Central Valley ancestry, and imported coastal steel- National Marine Fisheries Service, Santa Cruz, CA 95060 USA head stocks. In contrast to patterns typical of coastal and University of California, Santa Cruz, CA 95060 USA steelhead, Central Valley O. mykiss above and below KEY WORDS dams within the same tributary were not found to be each others’ closest relatives, and we found no Evolution, genetics, adaptation, steelhead, trout, relationship between genetic and geographic distance Central Valley. among below-barrier populations. While introgression by hatchery rainbow trout strains does not appear ABSTRACT to be widespread among above-barrier populations, steelhead in the American River and some neigh- Steelhead/rainbow trout (Oncorhynchus mykiss) boring tributaries have been introgressed by coastal are found in all of the major tributaries of the steelhead. Together, these results demonstrate that Sacramento and San Joaquin rivers, which flow the ancestral population genetic structure that existed through California’s Central Valley and enter the among Central Valley tributaries has been signifi- ocean through San Francisco Bay and the Golden cantly altered in contemporary populations. Future Gate. This river system is heavily affected by water conservation, restoration, and mitigation efforts development, agriculture, and invasive species, and should take this into account when working to meet salmon and trout hatchery propagation has been recovery planning goals.