Two Subspecies of Bent-Winged Bats
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<I>Mycosphaerella</I> Species of Quarantine
Persoonia 29, 2012: 101–115 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158512X661282 DNA barcoding of Mycosphaerella species of quarantine importance to Europe W. Quaedvlieg1,2, J.Z. Groenewald1, M. de Jesús Yáñez-Morales3, P.W. Crous1,2,4 Key words Abstract The EU 7th Framework Program provided funds for Quarantine Barcoding of Life (QBOL) to develop a quick, reliable and accurate DNA barcode-based diagnostic tool for selected species on the European and Mediter- EPPO ranean Plant Protection Organization (EPPO) A1/A2 quarantine lists. Seven nuclear genomic loci were evaluated Lecanosticta to determine those best suited for identifying species of Mycosphaerella and/or its associated anamorphs. These Q-bank genes included -tubulin (Btub), internal transcribed spacer regions of the nrDNA operon (ITS), 28S nrDNA (LSU), QBOL β Actin (Act), Calmodulin (Cal), Translation elongation factor 1-alpha (EF-1α) and RNA polymerase II second larg- est subunit (RPB2). Loci were tested on their Kimura-2-parameter-based inter- and intraspecific variation, PCR amplification success rate and ability to distinguish between quarantine species and closely related taxa. Results showed that none of these loci was solely suited as a reliable barcoding locus for the tested fungi. A combination of a primary and secondary barcoding locus was found to compensate for individual weaknesses and provide reliable identification. A combination of ITS with either EF-1α or Btub was reliable as barcoding loci for EPPO A1/A2-listed Mycosphaerella species. Furthermore, Lecanosticta acicola was shown to represent a species complex, revealing two novel species described here, namely L. -
Teratosphaeria Nubilosa, a Serious Leaf Disease Pathogen of Eucalyptus Spp
MOLECULAR PLANT PATHOLOGY (2009) 10(1), 1–14 DOI: 10.1111/J.1364-3703.2008.00516.X PathogenBlackwell Publishing Ltd profile Teratosphaeria nubilosa, a serious leaf disease pathogen of Eucalyptus spp. in native and introduced areas GAVIN C. HUNTER1,2,*, PEDRO W. CROUS1,2, ANGUS J. CARNEGIE3 AND MICHAEL J. WINGFIELD2 1CBS Fungal Biodiversity Centre, PO Box 85167, 3508 AD, Utrecht, the Netherlands 2Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, Gauteng, South Africa 3Forest Resources Research, NSW Department of Primary Industries, PO Box 100, Beecroft 2119, NSW, Australia Useful websites: Mycobank, http://www.mycobank.org; SUMMARY Mycosphaerella identification website, http://www.cbs.knaw.nl/ Background: Teratosphaeria nubilosa is a serious leaf pathogen mycosphaerella/BioloMICS.aspx of several Eucalyptus spp. This review considers the taxonomic history, epidemiology, host associations and molecular biology of T. nubilosa. Taxonomy: Kingdom Fungi; Phylum Ascomycota; Class INTRODUCTION Dothideomycetes; Order Capnodiales; Family Teratosphaeriaceae; genus Teratosphaeria; species nubilosa. Many species of the ascomycete genera Mycosphaerella and Teratosphaeria infect leaves of Eucalyptus spp., where they cause Identification: Pseudothecia hypophyllous, less so amphig- a disease broadly referred to as Mycosphaerella leaf disease enous, ascomata black, globose becoming erumpent, asci apara- (MLD) (Burgess et al., 2007; Carnegie et al., 2007; Crous, 1998; physate, fasciculate, bitunicate, obovoid to ellipsoid, straight or Crous et al., 2004a, 2006b, 2007a,b). The predominant symptoms incurved, eight-spored, ascospores hyaline, non-guttulate, thin of MLD are leaf spots on the abaxial and/or adaxial leaf surfaces walled, straight to slightly curved, obovoid with obtuse ends, that vary in size, shape and colour (Crous, 1998). -
Endomycobiome Associated with Females of the Planthopper Delphacodes Kuscheli (Hemiptera: Delphacidae): a Metabarcoding Approach
Heliyon 6 (2020) e04634 Contents lists available at ScienceDirect Heliyon journal homepage: www.cell.com/heliyon Research article Endomycobiome associated with females of the planthopper Delphacodes kuscheli (Hemiptera: Delphacidae): A metabarcoding approach María E. Brentassi a,b,*, Rocío Medina c,d, Daniela de la Fuente a,c, Mario EE. Franco c,d, Andrea V. Toledo c,d, Mario CN. Saparrat c,e,f,g, Pedro A. Balatti b,d,g a Division Entomología, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Buenos Aires, Argentina b Comision de Investigaciones Científicas de la Provincia de Buenos Aires (CIC), Buenos Aires, Argentina c Consejo Nacional de Investigaciones Científicas y Tecnicas (CONICET), Buenos Aires, Argentina d Centro de Investigaciones de Fitopatología (CIDEFI), Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, Buenos Aires, Argentina e Instituto de Fisiología Vegetal (INFIVE), Universidad Nacional de La Plata, Buenos Aires, Argentina f Instituto de Botanica Carlos Spegazzini, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Buenos Aires, Argentina g Catedra de Microbiología Agrícola, Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, Buenos Aires, Argentina ARTICLE INFO ABSTRACT Keywords: A metabarcoding approach was performed aimed at identifying fungi associated with Delphacodes kuscheli Ecology (Hemiptera: Delphacidae), the main vector of “Mal de Río Cuarto” disease in Argentina. A total of 91 fungal Environmental science genera were found, and among them, 24 were previously identified for Delphacidae. The detection of fungi that Microbiology are frequently associated with the phylloplane or are endophytes, as well as their presence in digestive tracts of Mutualism other insects, suggest that feeding might be an important mechanism of their horizontal transfer in planthoppers. -
Mycosphaerella Is Polyphyletic
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 58: 1–32. 2007. doi:0.3114/sim.2007.58.0 Mycosphaerella is polyphyletic P.W. Crous*, U. Braun2 and J.Z. Groenewald CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; 2Martin-Luther-Universität, Institut für Biologie, Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany *Correspondence: Pedro W. Crous, [email protected] Abstract: Mycosphaerella, one of the largest genera of ascomycetes, encompasses several thousand species and has anamorphs residing in more than 30 form genera. Although previous phylogenetic studies based on the ITS rDNA locus supported the monophyly of the genus, DNA sequence data derived from the LSU gene distinguish several clades and families in what has hitherto been considered to represent the Mycosphaerellaceae. Several important leaf spotting and extremotolerant species need to be disposed to the genus Teratosphaeria, for which a new family, the Teratosphaeriaceae, is introduced. Other distinct clades represent the Schizothyriaceae, Davidiellaceae, Capnodiaceae, and the Mycosphaerellaceae. Within the two major clades, namely Teratosphaeriaceae and Mycosphaerellaceae, most anamorph genera are polyphyletic, and new anamorph concepts need to be derived to cope with dual nomenclature within the Mycosphaerella complex. Taxonomic novelties: Batcheloromyces eucalypti (Alcorn) Crous & U. Braun, comb. nov., Catenulostroma Crous & U. Braun, gen. nov., Catenulostroma abietis (Butin & Pehl) Crous & U. Braun, comb. nov., Catenulostroma chromoblastomycosum Crous & U. Braun, sp. nov., Catenulostroma elginense (Joanne E. Taylor & Crous) Crous & U. Braun, comb. nov., Catenulostroma excentricum (B. Sutton & Ganap.) Crous & U. Braun, comb. nov., Catenulostroma germanicum Crous & U. Braun, sp. nov., Catenulostroma macowanii (Sacc.) Crous & U. -
Discovery of New Mycoviral Genomes Within Publicly Available Fungal Transcriptomic Datasets
bioRxiv preprint doi: https://doi.org/10.1101/510404; this version posted January 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Discovery of new mycoviral genomes within publicly available fungal transcriptomic datasets 1 1 1,2 1 Kerrigan B. Gilbert , Emily E. Holcomb , Robyn L. Allscheid , James C. Carrington * 1 Donald Danforth Plant Science Center, Saint Louis, Missouri, USA 2 Current address: National Corn Growers Association, Chesterfield, Missouri, USA * Address correspondence to James C. Carrington E-mail: [email protected] Short title: Virus discovery from RNA-seq data bioRxiv preprint doi: https://doi.org/10.1101/510404; this version posted January 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Abstract The distribution and diversity of RNA viruses in fungi is incompletely understood due to the often cryptic nature of mycoviral infections and the focused study of primarily pathogenic and/or economically important fungi. As most viruses that are known to infect fungi possess either single-stranded or double-stranded RNA genomes, transcriptomic data provides the opportunity to query for viruses in diverse fungal samples without any a priori knowledge of virus infection. Here we describe a systematic survey of all transcriptomic datasets from fungi belonging to the subphylum Pezizomycotina. -
Proposed Generic Names for Dothideomycetes
Naming and outline of Dothideomycetes–2014 Nalin N. Wijayawardene1, 2, Pedro W. Crous3, Paul M. Kirk4, David L. Hawksworth4, 5, 6, Dongqin Dai1, 2, Eric Boehm7, Saranyaphat Boonmee1, 2, Uwe Braun8, Putarak Chomnunti1, 2, , Melvina J. D'souza1, 2, Paul Diederich9, Asha Dissanayake1, 2, 10, Mingkhuan Doilom1, 2, Francesco Doveri11, Singang Hongsanan1, 2, E.B. Gareth Jones12, 13, Johannes Z. Groenewald3, Ruvishika Jayawardena1, 2, 10, James D. Lawrey14, Yan Mei Li15, 16, Yong Xiang Liu17, Robert Lücking18, Hugo Madrid3, Dimuthu S. Manamgoda1, 2, Jutamart Monkai1, 2, Lucia Muggia19, 20, Matthew P. Nelsen18, 21, Ka-Lai Pang22, Rungtiwa Phookamsak1, 2, Indunil Senanayake1, 2, Carol A. Shearer23, Satinee Suetrong24, Kazuaki Tanaka25, Kasun M. Thambugala1, 2, 17, Saowanee Wikee1, 2, Hai-Xia Wu15, 16, Ying Zhang26, Begoña Aguirre-Hudson5, Siti A. Alias27, André Aptroot28, Ali H. Bahkali29, Jose L. Bezerra30, Jayarama D. Bhat1, 2, 31, Ekachai Chukeatirote1, 2, Cécile Gueidan5, Kazuyuki Hirayama25, G. Sybren De Hoog3, Ji Chuan Kang32, Kerry Knudsen33, Wen Jing Li1, 2, Xinghong Li10, ZouYi Liu17, Ausana Mapook1, 2, Eric H.C. McKenzie34, Andrew N. Miller35, Peter E. Mortimer36, 37, Dhanushka Nadeeshan1, 2, Alan J.L. Phillips38, Huzefa A. Raja39, Christian Scheuer19, Felix Schumm40, Joanne E. Taylor41, Qing Tian1, 2, Saowaluck Tibpromma1, 2, Yong Wang42, Jianchu Xu3, 4, Jiye Yan10, Supalak Yacharoen1, 2, Min Zhang15, 16, Joyce Woudenberg3 and K. D. Hyde1, 2, 37, 38 1Institute of Excellence in Fungal Research and 2School of Science, Mae Fah Luang University, -
Phylogenetic Placement of Bahusandhika, Cancellidium and Pseudoepicoccum (Asexual Ascomycota)
Phytotaxa 176 (1): 068–080 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2014 Magnolia Press ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.176.1.9 Phylogenetic placement of Bahusandhika, Cancellidium and Pseudoepicoccum (asexual Ascomycota) PRATIBHA, J.1, PRABHUGAONKAR, A.1,2, HYDE, K.D.3,4 & BHAT, D.J.1 1 Department of Botany, Goa University, Goa 403206, India 2 Nurture Earth R&D Pvt Ltd, MIT Campus, Aurangabad-431028, India; email: [email protected] 3 Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 4 School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand Abstract Most hyphomycetous conidial fungi cannot be presently placed in a natural classification. They need recollecting and sequencing so that phylogenetic analysis can resolve their taxonomic affinities. The type species of the asexual genera, Bahusandhika, Cancellidium and Pseudoepicoccum were recollected, isolated in culture, and the ITS and LSU gene regions sequenced. The sequence data were analysed with reference data obtained through GenBank. The DNA sequence analyses shows that Bahusandhika indica has a close relationship with Berkleasmium in the order Pleosporales and Pseudoepicoccum cocos with Piedraia in Capnodiales; both are members of Dothideomycetes. Cancellidium applanatum forms a distinct lineage in the Sordariomycetes. Key words: anamorphic fungi, ITS, LSU, phylogeny Introduction Asexually reproducing ascomycetous fungi are ubiquitous in nature and worldwide in distribution, occurring from the tropics to the polar regions and from mountain tops to the deep oceans. These fungi colonize, multiply and survive in diverse habitats, such as water, soil, air, litter, dung, foam, live plants and animals, as saprobes, pathogens and mutualists. -
Teratopyrones A–C, Dimeric Naphtho–Pyrones and Other Metabolites
molecules Article Teratopyrones A–C, Dimeric Naphtho-γ-Pyrones and Other Metabolites from Teratosphaeria sp. AK1128, a Fungal Endophyte of Equisetum arvense 1 2 2 3 3 Ya-Ming Xu , A. Elizabeth Arnold , Jana M. U0Ren , Li-Jiang Xuan , Wen-Qiong Wang and A. A. Leslie Gunatilaka 1,* 1 Southwest Center for Natural Products Research, School of Natural Resources and the Environment, College of Agriculture and Life Sciences, University of Arizona, 250 E, Valencia Road, Tucson, AZ 85706, USA; [email protected] 2 School of Plant Sciences, College of Agriculture and Life Sciences, University of Arizona, Tucson, AZ 85721, USA; [email protected] (A.E.A.); [email protected] (J.M.U.) 3 State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 501 Haike Road, Zhangjiang Hi-Tech Park, Shanghai 201203, China; [email protected] (L.-J.X.); [email protected] (W.-Q.W.) * Correspondence: [email protected]; Tel.: +520-621-9932 Academic Editors: Muhammad Ilias and Dhammika Nanayakkara Received: 12 October 2020; Accepted: 26 October 2020; Published: 30 October 2020 Abstract: Bioassay-guided fractionation of a cytotoxic extract derived from a solid potato dextrose agar (PDA) culture of Teratosphaeria sp. AK1128, a fungal endophyte of Equisetum arvense, afforded three new naphtho-γ-pyrone dimers, teratopyrones A–C (1–3), together with five known naphtho-γ-pyrones, aurasperone B (4), aurasperone C (5), aurasperone F (6), nigerasperone A (7), and fonsecin B (8), and two known diketopiperazines, asperazine (9) and isorugulosuvine (10). The structures of 1–3 were determined on the basis of their spectroscopic data. -
I. General Introduction ……………………………………………………………
Márcia Filipa Lopes Rosendo de Castro Silva MSc Studies on the Eucalyptus Leaf Disease Complex in Portugal Dissertação para obtenção do Grau de Doutor em Biologia (especialidade em Microbiologia) Orientador: Doutor Alan John Lander Phillips, FCT/UNL Co-orientador: Doutora Maria Helena Neves Machado, INIAV Outubro 2015 Márcia Filipa Lopes Rosendo de Castro Silva MSc Studies on the Eucalyptus Leaf Disease Complex in Portugal Dissertação para obtenção do Grau de Doutor em Biologia (especialidade em Microbiologia) Orientador: Doutor Alan John Lander Phillips, FCT/UNL Co-orientador: Doutora Maria Helena Neves Machado, INIAV Outubro 2015 Para os meus meninos To my little boys “In God’s garden of grace, even a broken tree can bear fruit.” Rick Warren V “Copyright” Márcia Filipa Lopes Rosendo de Castro Silva FCT/UNL e da UNL A Faculdade de Ciências e Tecnologia e a Universidade Nova de Lisboa têm o direito, perpétuo e sem limites geográficos, de arquivar e publicar esta dissertação através de exemplares impressos reproduzidos em papel ou de forma digital, ou por qualquer outro meio conhecido ou que venha a ser inventado, e de a divulgar através de repositórios científicos e de admitir a sua cópia e distribuição com objetivos educacionais ou de investigação, não comerciais, desde que seja dado crédito ao autor e editor. Excetuando, os capítulos referentes a artigos científicos os quais só podem ser reproduzidos sob a permissão dos editores originais e sujeitos às restrições de cópia impostas pelos mesmos, mais concretamente os capítulos 1, 2, 3, 4, 5 e 6. VII Esta dissertação foi financiada pela Fundação para a Ciência e Tecnologia através da bolsa de doutoramento SFRH/BD/40784/2007. -
Microbial Hitchhikers on Intercontinental Dust: Catching a Lift in Chad
The ISME Journal (2013) 7, 850–867 & 2013 International Society for Microbial Ecology All rights reserved 1751-7362/13 www.nature.com/ismej ORIGINAL ARTICLE Microbial hitchhikers on intercontinental dust: catching a lift in Chad Jocelyne Favet1, Ales Lapanje2, Adriana Giongo3, Suzanne Kennedy4, Yin-Yin Aung1, Arlette Cattaneo1, Austin G Davis-Richardson3, Christopher T Brown3, Renate Kort5, Hans-Ju¨ rgen Brumsack6, Bernhard Schnetger6, Adrian Chappell7, Jaap Kroijenga8, Andreas Beck9,10, Karin Schwibbert11, Ahmed H Mohamed12, Timothy Kirchner12, Patricia Dorr de Quadros3, Eric W Triplett3, William J Broughton1,11 and Anna A Gorbushina1,11,13 1Universite´ de Gene`ve, Sciences III, Gene`ve 4, Switzerland; 2Institute of Physical Biology, Ljubljana, Slovenia; 3Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL, USA; 4MO BIO Laboratories Inc., Carlsbad, CA, USA; 5Elektronenmikroskopie, Carl von Ossietzky Universita¨t, Oldenburg, Germany; 6Microbiogeochemie, ICBM, Carl von Ossietzky Universita¨t, Oldenburg, Germany; 7CSIRO Land and Water, Black Mountain Laboratories, Black Mountain, ACT, Australia; 8Konvintsdyk 1, Friesland, The Netherlands; 9Botanische Staatssammlung Mu¨nchen, Department of Lichenology and Bryology, Mu¨nchen, Germany; 10GeoBio-Center, Ludwig-Maximilians Universita¨t Mu¨nchen, Mu¨nchen, Germany; 11Bundesanstalt fu¨r Materialforschung, und -pru¨fung, Abteilung Material und Umwelt, Berlin, Germany; 12Geomatics SFRC IFAS, University of Florida, Gainesville, FL, USA and 13Freie Universita¨t Berlin, Fachbereich Biologie, Chemie und Pharmazie & Geowissenschaften, Berlin, Germany Ancient mariners knew that dust whipped up from deserts by strong winds travelled long distances, including over oceans. Satellite remote sensing revealed major dust sources across the Sahara. Indeed, the Bode´le´ Depression in the Republic of Chad has been called the dustiest place on earth. -
Two Subspecies of Bent-Winged Bats (Miniopterus
RESEARCH ARTICLE Two subspecies of bent-winged bats (Miniopterus orianae bassanii and oceanensis) in southern Australia have diverse fungal skin flora but not Pseudogymnoascus destructans 1,2 3 1 2 Peter H. HolzID *, Linda F. Lumsden , Marc S. Marenda , Glenn F. Browning , Jasmin Hufschmid1 a1111111111 1 Department of Veterinary Biosciences, Melbourne Veterinary School, The Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Werribee, Victoria, Australia, 2 Asia-Pacific Centre for a1111111111 Animal Health, Melbourne Veterinary School, The Faculty of Veterinary and Agricultural Sciences, The a1111111111 University of Melbourne, Parkville, Victoria, Australia, 3 Arthur Rylah Institute for Environmental Research, a1111111111 Department of Environment, Land, Water and Planning, Heidelberg, Victoria, Australia a1111111111 * [email protected] Abstract OPEN ACCESS Citation: Holz PH, Lumsden LF, Marenda MS, Fungi are increasingly being documented as causing disease in a wide range of faunal spe- Browning GF, Hufschmid J (2018) Two subspecies cies, including Pseudogymnoascus destructans, the fungus responsible for white nose syn- of bent-winged bats (Miniopterus orianae bassanii drome which is having a devastating impact on bats in North America. The population size and oceanensis) in southern Australia have diverse of the Australian southern bent-winged bat (Miniopterus orianae bassanii), a critically fungal skin flora but not Pseudogymnoascus destructans. PLoS ONE 13(10): e0204282. https:// endangered subspecies, has declined over the past 50 years. As part of a larger study to doi.org/10.1371/journal.pone.0204282 determine whether disease could be a contributing factor to this decline, southern bent- Editor: Michelle L. Baker, CSIRO, AUSTRALIA winged bats were tested for the presence of a range of potentially pathogenic fungi: P. -
Introducing the Consolidated Species Concept to Resolve Species in the <I>Teratosphaeriaceae</I>
Persoonia 33, 2014: 1–40 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158514X681981 Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae W. Quaedvlieg1, M. Binder1, J.Z. Groenewald1, B.A. Summerell2, A.J. Carnegie3, T.I. Burgess4, P.W. Crous1,5,6 Key words Abstract The Teratosphaeriaceae represents a recently established family that includes numerous saprobic, extremophilic, human opportunistic, and plant pathogenic fungi. Partial DNA sequence data of the 28S rRNA and Eucalyptus RPB2 genes strongly support a separation of the Mycosphaerellaceae from the Teratosphaeriaceae, and also pro- multi-locus vide support for the Extremaceae and Neodevriesiaceae, two novel families including many extremophilic fungi that phylogeny occur on a diversity of substrates. In addition, a multi-locus DNA sequence dataset was generated (ITS, LSU, Btub, species concepts Act, RPB2, EF-1α and Cal) to distinguish taxa in Mycosphaerella and Teratosphaeria associated with leaf disease taxonomy of Eucalyptus, leading to the introduction of 23 novel genera, five species and 48 new combinations. Species are distinguished based on a polyphasic approach, combining morphological, ecological and phylogenetic species con- cepts, named here as the Consolidated Species Concept (CSC). From the DNA sequence data generated, we show that each one of the five coding genes tested, reliably identify most of the species present in this dataset (except species of Pseudocercospora). The ITS gene serves as a primary barcode locus as it is easily generated and has the most extensive dataset available, while either Btub, EF-1α or RPB2 provide a useful secondary barcode locus.