Program Synthesis
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Program Synthesis with Grammars and Semantics in Genetic Programming
Program Synthesis with Grammars and Semantics in Genetic Programming Stefan Forstenlechner UCD student number: 14204817 The thesis is submitted to University College Dublin in fulfilment of the requirements for the degree of DOCTOR OF PHILOSOPHY School of Business Head of School: Prof. Anthony Brabazon Research Supervisors: Prof. Michael O’Neill Dr. Miguel Nicolau External Examiner: Dr. John R. Woodward January 2019 Contents Contents i Abstract vii Statement of Original Authorship viii Acknowledgements ix List of Figures xi List of Tables xiv List of Algorithms xvii List of Abbreviations xviii Publications Arising xx I Introduction and Literature Review 1 1 Introduction 2 1.1 Aim of Thesis . .3 1.2 Research Questions . .4 1.3 Contributions . .7 1.3.1 Technical contributions . .8 1.4 Limitations . .8 1.5 Thesis Outline . .9 i CONTENTS 2 Related Work 12 2.1 Evolutionary Computation . 12 2.2 Genetic Programming . 14 2.2.1 Representation . 15 2.2.2 Initialization . 16 2.2.3 Fitness . 17 2.2.4 Selection . 17 2.2.5 Crossover . 19 2.2.6 Mutation . 19 2.2.7 GP Summary . 20 2.2.8 Grammars . 20 2.3 Program Synthesis . 23 2.3.1 Program Synthesis in Genetic Programming . 26 2.3.2 General Program Synthesis Benchmark Suite . 30 2.4 Semantics . 32 2.4.1 Semantic operators . 34 2.4.2 Geometric Semantic GP . 37 2.5 Conclusion . 38 II Experimental Research 40 3 General Grammar Design 41 3.1 Grammars for G3P . 41 3.2 Sorting Network . 42 3.3 Structure in Grammars . 43 3.4 Sorting Network Grammar Design . -
Persistence in Algebraic Specifications
Persistence in Algebraic Specifications Freek Wiedijk Persistence in Algebraic Specifications Persistence in Algebraic Specifications Academisch Proefschrift ter verkrijging van de graad van doctor aan de Universiteit van Amsterdam, op gezag van de Rector Magnificus prof. dr. P.W.M. de Meijer, in het openbaar te verdedigen in de Aula der Universiteit (Oude Lutherse Kerk, ingang Singel 411, hoek Spui), op donderdag 12 december 1991 te 12.00 uur door Frederik Wiedijk geboren te Haarlem Promotores: prof. dr. P. Klint & prof. dr. J.A. Bergstra Faculteit Wiskunde en Informatica Het hier beschreven onderzoek werd mede mogelijk gemaakt door steun van de Ne- derlandse organisatie voor Wetenschappelijk Onderzoek (voorheen de nederlandse organisatie voor Zuiver-Wetenschappelijk Onderzoek) binnen project nummer 612- 317-013 getiteld Executeerbaar maken van algebraïsche specificaties. voor Jan Truijens Contents Contents Acknowledgements 1 Introduction 1 1.1 Motivation and general overview 2 1.2 Examples of erroneous specifications 13 1.3 Background and related work 22 2. Theory 25 2.1 Basic notions 27 2.1.1. Equational specifications 28 2.1.2 Term rewriting systems 29 2.2 Termination 30 2.2.1 Weak and strong termination 33 2.2.2 Path orderings 34 2.2.3 Decidability 40 2.3 Confluence 41 2.3.1 Weak and strong confluence 42 2.3.2 Overlapping 44 2.3.3 Decidability 45 2.4 Reduction strategies 46 2.5 Persistence 48 2.5.1 Weak and strong persistence 52 2.5.2 Term approximations and bases 54 2.5.3 Normal form analysis 56 2.5.4 Decidability 60 2.6 Primitive recursive -
Computations in Algebraic Geometry with Macaulay 2
Computations in algebraic geometry with Macaulay 2 Editors: D. Eisenbud, D. Grayson, M. Stillman, and B. Sturmfels Preface Systems of polynomial equations arise throughout mathematics, science, and engineering. Algebraic geometry provides powerful theoretical techniques for studying the qualitative and quantitative features of their solution sets. Re- cently developed algorithms have made theoretical aspects of the subject accessible to a broad range of mathematicians and scientists. The algorith- mic approach to the subject has two principal aims: developing new tools for research within mathematics, and providing new tools for modeling and solv- ing problems that arise in the sciences and engineering. A healthy synergy emerges, as new theorems yield new algorithms and emerging applications lead to new theoretical questions. This book presents algorithmic tools for algebraic geometry and experi- mental applications of them. It also introduces a software system in which the tools have been implemented and with which the experiments can be carried out. Macaulay 2 is a computer algebra system devoted to supporting research in algebraic geometry, commutative algebra, and their applications. The reader of this book will encounter Macaulay 2 in the context of concrete applications and practical computations in algebraic geometry. The expositions of the algorithmic tools presented here are designed to serve as a useful guide for those wishing to bring such tools to bear on their own problems. A wide range of mathematical scientists should find these expositions valuable. This includes both the users of other programs similar to Macaulay 2 (for example, Singular and CoCoA) and those who are not interested in explicit machine computations at all. -
PLS Toolbox 7.0 Pltternf - Plots a 3D Ternary Diagram with Frequency of Occurrence
plotgui - Interactive data viewer. logdecay - Mean centers and variance scales a matrix using the log plttern - Plots a 2D ternary diagram. decay of the variable axis. PLS_Toolbox 7.0 pltternf - Plots a 3D ternary diagram with frequency of occurrence. lsq2top - Fits a polynomial to the top/(bottom) of data. querydb - Executes a query on a database defined by connection mdcheck - Missing Data Checker and infiller. Quick-Reference Card string. med2top - Fits a constant to top/(bottom) of data. Copyright © Eigenvector Research, 2012 reportwriter - Write a summary of the analysis including medcn - Median center scales matrix to median zero. associated figures to html/word/powerpoint. mncn - Scale matrix to mean zero. Help and Information rwb - Red white and blue color map. mscorr - Multiplicative scatter/signal correction (MSC). setpath - Modifies and saves current directory to the MATLAB normaliz - Normalize rows of matrix. helppls - Context related help on the PLS_Toolbox. search path. npreprocess - Preprocessing of multi-way arrays. readme - Release notes for Version 4.1 of PLS_Toolbox. snabsreadr - Reads Stellarnet ABS XY files. oscapp - Applies OSC model to new data. demos - Demo list for the PLS_Toolbox. spcreadr - Reads a Galactic SPC file. osccalc - Calculates orthogonal signal correction (OSC). evricompatibility - Tests for inter-product compatibility of trendtool - Univariate trend analysis tool. poissonscale - Perform Poisson scaling with scaling offset. Eigenvector toolboxes. vline - Adds vertical lines to figure at specified locations. polyinterp - Polynomial interpolation, smoothing, and evridebug - Checks the PLS_Toolbox installation for problems. writeasf - Writes AIT ASF files from a dataset object. differentiation. evridir - Locate and or create EVRI home directory. writecsv - Export a DataSet object to a comma-separated values preprocess - Selection and application of standard preprocessing evriinstall - Install Eigenvector Research Product. -
What Can Computer Algebraic Geometry Do Today?
What can computer Algebraic Geometry do today? Gregory G. Smith Wolfram Decker Mike Stillman 14 July 2015 Essential Questions ̭ What can be computed? ̭ What software is currently available? ̭ What would you like to compute? ̭ How should software advance your research? Basic Mathematical Types ̭ Polynomial Rings, Ideals, Modules, ̭ Varieties (affine, projective, toric, abstract), ̭ Sheaves, Divisors, Intersection Rings, ̭ Maps, Chain Complexes, Homology, ̭ Polyhedra, Graphs, Matroids, ̯ Established Geometric Tools ̭ Elimination, Blowups, Normalization, ̭ Rational maps, Working with divisors, ̭ Components, Parametrizing curves, ̭ Sheaf Cohomology, ঠ-modules, ̯ Emerging Geometric Tools ̭ Classification of singularities, ̭ Numerical algebraic geometry, ̭ ैक़௴Ь, Derived equivalences, ̭ Deformation theory,Positivity, ̯ Some Geometric Successes ̭ GEOGRAPHY OF SURFACES: exhibiting surfaces with given invariants ̭ BOIJ-SÖDERBERG: examples lead to new conjectures and theorems ̭ MODULI SPACES: computer aided proofs of unirationality Some Existing Software ̭ GAP,Macaulay2, SINGULAR, ̭ CoCoA, Magma, Sage, PARI, RISA/ASIR, ̭ Gfan, Polymake, Normaliz, 4ti2, ̭ Bertini, PHCpack, Schubert, Bergman, an idiosyncratic and incomplete list Effective Software ̭ USEABLE: documented examples ̭ MAINTAINABLE: includes tests, part of a larger distribution ̭ PUBLISHABLE: Journal of Software for Algebra and Geometry; www.j-sag.org ̭ CITATIONS: reference software Recent Developments in Singular Wolfram Decker Janko B¨ohm, Hans Sch¨onemann, Mathias Schulze Mohamed Barakat TU Kaiserslautern July 14, 2015 Wolfram Decker (TU-KL) Recent Developments in Singular July 14, 2015 1 / 24 commutative and non-commutative algebra, singularity theory, and with packages for convex and tropical geometry. It is free and open-source under the GNU General Public Licence. -
The Power of Pyramid Decomposition in Normaliz
Journal of Symbolic Computation 74 (2016) 513–536 Contents lists available at ScienceDirect Journal of Symbolic Computation www.elsevier.com/locate/jsc The power of pyramid decomposition in Normaliz Winfried Bruns a, Bogdan Ichim b, Christof Söger a a Universität Osnabrück, FB Mathematik/Informatik, 49069 Osnabrück, Germany b Simion Stoilow Institute of Mathematics of the Romanian Academy, Research Unit 5, C.P. 1-764, 010702 Bucharest, Romania a r t i c l e i n f o a b s t r a c t Article history: We describe the use of pyramid decomposition in Normaliz, a soft- Received 27 January 2014 ware tool for the computation of Hilbert bases and enumerative Accepted 26 August 2015 data of rational cones and affine monoids. Pyramid decomposition Available online 16 September 2015 in connection with efficient parallelization and streamlined evalua- tion of simplicial cones has enabled Normaliz to process triangula- MSC: ≈ · 11 52B20 tions of size 5 10 that arise in the computation of Ehrhart 13F20 series related to the theory of social choice. 14M25 © 2015 Elsevier Ltd. All rights reserved. 91B12 Keywords: Hilbert basis Ehrhart series Hilbert series Rational polytope Volume Triangulation Pyramid decomposition 1. Introduction Normaliz (Bruns et al., 2015)is a software tool for the computation of Hilbert bases and enumera- tive data of rational cones and affine monoids. In the 17 years of its existence it has found numerous applications; for example, in integer programming (Bogart et al., 2010), algebraic geometry (Craw et al., 2007), theoretical physics (Kappl et al., 2011), commutative algebra (Sturmfels and Welker, 2012) or elimination theory (Emiris et al., 2013). -
Normaliz 3.2.0 Contents
Normaliz 3.2.0 January 22, 2017 Winfried Bruns, Tim Römer, Richard Sieg and Christof Söger Normaliz 2 team member: Bogdan Ichim http://normaliz.uos.de https://github.com/Normaliz mailto:[email protected] Contents 1. Introduction 7 1.1. The objectives of Normaliz . .7 1.2. Platforms, implementation and access from other systems . .8 1.3. Major changes relative to version 3.1.1 . .9 1.4. Future extensions . .9 1.5. Download and installation . .9 2. Normaliz by examples 10 2.1. Terminology . 10 2.2. Practical preparations . 11 2.3. A cone in dimension 2 . 12 2.3.1. The Hilbert basis . 13 2.3.2. The cone by inequalities . 14 2.3.3. The interior . 15 2.4. A lattice polytope . 17 2.4.1. Only the lattice points . 20 2.5. A rational polytope . 20 2.5.1. The rational polytope by inequalities . 23 2.6. Magic squares . 24 2.6.1. With even corners . 27 2.6.2. The lattice as input . 30 1 2.7. Decomposition in a numerical semigroup . 30 2.8. A job for the dual algorithm . 31 2.9. A dull polyhedron . 32 2.9.1. Defining it by generators . 34 2.10. The Condorcet paradoxon . 35 2.10.1. Excluding ties . 36 2.10.2. At least one vote for every preference order . 37 2.11. Testing normality . 38 2.11.1. Computing just a witness . 39 2.12. Inhomogeneous congruences . 40 2.12.1. Lattice and offset . 41 2.12.2. Variation of the signs . 41 2.13. -
Learning Functional Programs with Function Invention and Reuse
Learning functional programs with function invention and reuse Andrei Diaconu University of Oxford arXiv:2011.08881v1 [cs.PL] 17 Nov 2020 Honour School of Computer Science Trinity 2020 Abstract Inductive programming (IP) is a field whose main goal is synthe- sising programs that respect a set of examples, given some form of background knowledge. This paper is concerned with a subfield of IP, inductive functional programming (IFP). We explore the idea of generating modular functional programs, and how those allow for function reuse, with the aim to reduce the size of the programs. We introduce two algorithms that attempt to solve the problem and explore type based pruning techniques in the context of modular programs. By experimenting with the imple- mentation of one of those algorithms, we show reuse is important (if not crucial) for a variety of problems and distinguished two broad classes of programs that will generally benefit from func- tion reuse. Contents 1 Introduction5 1.1 Inductive programming . .5 1.2 Motivation . .6 1.3 Contributions . .7 1.4 Structure of the report . .8 2 Background and related work 10 2.1 Background on IP . 10 2.2 Related work . 12 2.2.1 Metagol . 12 2.2.2 Magic Haskeller . 13 2.2.3 λ2 ............................. 13 2.3 Invention and reuse . 13 3 Problem description 15 3.1 Abstract description of the problem . 15 3.2 Invention and reuse . 19 4 Algorithms for the program synthesis problem 21 4.1 Preliminaries . 22 4.1.1 Target language and the type system . 22 4.1.2 Combinatorial search . -
Program Synthesis with Types
University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations 2015 Program Synthesis With Types Peter-Michael Santos Osera University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/edissertations Part of the Computer Sciences Commons Recommended Citation Osera, Peter-Michael Santos, "Program Synthesis With Types" (2015). Publicly Accessible Penn Dissertations. 1926. https://repository.upenn.edu/edissertations/1926 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/edissertations/1926 For more information, please contact [email protected]. Program Synthesis With Types Abstract Program synthesis, the automatic generation of programs from specification, promises to fundamentally change the way that we build software. By using synthesis tools, we can greatly speed up the time it takes to build complex software artifacts as well as construct programs that are automatically correct by virtue of the synthesis process. Studied since the 70s, researchers have applied techniques from many different sub-fields of computer science ot solve the program synthesis problem in a variety of domains and contexts. However, one domain that has been less explored than others is the domain of typed, functional programs. This is unfortunate because programs in richly-typed languages like OCaml and Haskell are known for ``writing themselves'' once the programmer gets the types correct. In light of this observation, can we use type theory to build more expressive and efficient type-directed synthesis systems for this domain of programs? This dissertation answers this question in the affirmative by building novel type- theoretic foundations for program synthesis. By using type theory as the basis of study for program synthesis, we are able to build core synthesis calculi for typed, functional programs, analyze the calculi's meta-theoretic properties, and extend these calculi to handle increasingly richer types and language features. -
Template-Based Program Verification and Program Synthesis
Software Tools for Technology Transfer manuscript No. (will be inserted by the editor) Template-based Program Verification and Program Synthesis Saurabh Srivastava? and Sumit Gulwani?? and Jeffrey S. Foster??? University of California, Berkeley and Microsoft Research, Redmond and University of Maryland, College Park Received: date / Revised version: date Abstract. Program verification is the task of automat- the subsequent step of writing the program in C, C++, ically generating proofs for a program's compliance with Java etc. There is additional effort in ensuring that all a given specification. Program synthesis is the task of corner cases are covered, which is a tiresome and man- automatically generating a program that meets a given ual process. The dilligent programmer will also verify specification. Both program verification and program syn- that the final program is not only correct but also me- thesis can be viewed as search problems, for proofs and chanically verifiable, which usually requires them to add programs, respectively. annotations illustrating the correctness. For these search problems, we present approaches This makes programming a subtle task, and the ef- based on user-provided insights in the form of templates. fort involved in writing correct programs is so high that Templates are hints about the syntactic forms of the in- in practice we accept that programs can only be approx- variants and programs, and help guide the search for imately correct. While developers do realize the pres- solutions. We show how to reduce the template-based ence of corner cases, the difficulty inherent in enumer- search problem to satisfiability solving, which permits ating and reasoning about them, or using a verification the use of off-the-shelf solvers to efficiently explore the framework, ensures that developers typically leave most search space. -
Arxiv:2010.08903V1 [Math.AC]
STANDARD PAIRS OF MONOMIAL IDEALS OVER NON-NORMAL AFFINE SEMIGROUPS IN SageMath BYEONGSU YU ABSTRACT. We present stdPairs.spyx,a SageMath library to compute standard pairs of a monomial ideal over a pointed (non-normal) affine semigroup ring. Moreover, stdPairs.spyx provides the associated prime ideals, the correspondingmultiplicities, and an irredundant irreducible primary decomposition of a monomial ideal. The library expands on the standardPairs func- tion on Macaulay2 over polynomial rings, and is based on algorithms from [6]. We also provide methods that allow the outputs from this library to be compatible with the Normaliz package of Macaulay2 and SageMath. 1. INTRODUCTION Affine semigroup rings are objects of many studies in combinatorial commutative algebra. The goal of this article is to present the SageMath library stdPairs.spyx, which systematizes computations for monomial ideals in affine semigroup rings. The algorithms implemented here are based on the notion of standard pairs, introduced for monomial ideals in polynomial rings by [8], and generalized to the semigroup ring case in [6]. Standard pairs are a combinatorial structure that contains information on primary and irreducible decompositions of monomial ideals, as well as multiplicities. One of the main contributions of [6] is that standard pairs and the associated algebraic concepts can be effectively computed over affine semigroup rings. The SageMath library stdPairs.spyx implements the algorithms of [6] to calculate standard pairs for monomial ideals in any pointed (non-normal) affine semigroup ring. This library can be regarded as a generalization of standardPairs function in Macaulay2 implemented by [4]. This library can be obtained via https://github.com/byeongsuyu/StdPairs. -
Arxiv:2010.15331V2 [Math.AC] 19 Nov 2020 Rlqeto Nivratter.Ti Ril Ecie Significant a Describes R Article Action This Group Theory
THE INVARIANTRING PACKAGE FOR MACAULAY2 LUIGI FERRARO, FEDERICO GALETTO, FRANCESCA GANDINI, HANG HUANG, MATTHEW MASTROENI, AND XIANGLONG NI Abstract. We describe a significant update to the existing InvariantRing package for Macaulay2. In addition to expanding and improving the methods of the existing package for actions of finite groups, the updated package adds func- tionality for computing invariants of diagonal actions of tori and finite abelian groups as well as invariants of arbitrary linearly reductive group actions. The implementation of the package has been completely overhauled with the aim of serving as a unified resource for invariant theory computations in Macaulay2. 1. Introduction Let G be a group acting linearly on an n-dimensional vector space V over a field K via v 7→ g · v for g ∈ G and v ∈ V . The action of G on V induces an action −1 of G on the polynomial ring K[V ]= K[x1,...,xn] by (g · f)(x)= f(g · x). By a classical result of Hilbert (see [DK15, 2.2.10]), the subring of invariant polynomials K[V ]G = {f ∈ K[V ] | g · f = f, ∀g ∈ G} is always a finitely generated K-algebra provided that G is linearly reductive and V is a rational representation of G.1 A linearly reductive group is a group that can be identified with a Zariski-closed subgroup of some general linear group GLn = GLn(K) and has good representation-theoretic properties while still being general enough to encompass all finite groups, all tori (K×)r, and all semisimple Lie groups (at least if char(K) = 0).