Atpb:F1 ATP Synthase Beta Subunit; TIM:Triose Phosphate Isomerase; CBS: Cystathionine

Group Spot Protein identified Peptide sequences Accession No. of Reference MS/ CD Function no. Matched (PSM) no. PSM / organism MS SC % score Pusa 1 Os02g0192700 HLPGFIEK;GVDAIACVSV gi|115444771 3/19 Oryza sativa 174 PRX Hypothetical Basmati 1 Hypothetical protein NDAFVMR;ALGVEMDLS (NCBI) ssp.japonica DKPMGLGVR 2 Putative ferredoxin- MKEIAPER;YRPKEPYTGR gi|41052915 3/11 Oryza sativa 128 - Cell signaling NADP(H) ;ITGDDAPGETWHMVFST (NCBI) ssp.japonica oxidoreductase DGEIPYR 3 Enolase FRAPVEPY;GNPTVEVDV gi|780372 3/11 Oryza sativa 43 - Energy and CCSDGTFAR;SFVSEYPIV ((NCBI) ssp.japonica metabolism SIEDPFDQDDWEHYAK 4 Hypothetical protein FDEGLPPILTALEVLDHNI gi|115439241 3/10 Oryza sativa 130 atpB Hypothetical R;DAEGQDVLLFIDNIFR; (NCBI) ssp.japonica NLQDIIAILGMDELSEDD KLTVAR 5 Chloroplast KYDEIDAAPEER;MVVELI gi|6525065 5/13 Oryza sativa 281 tufA Protein translational EF-Tu QPVACEQGMR;HSPFFPG (NCBI) ssp.japonica metabolism YRPQFYMR;DQVDDEELL QLVELEVR;KDQVDDEEL LQLVELEVR 6 Heat stress DASADGGGGGGDEDMT HFC2B 1/8 Oryza sativa 15 - Defense and transcription factor C- MVATEVVR ORYSJ ssp.japonica stress 2b (Swis-Prot) 7 Triose phosphate VIACVGETLEQR;WLAAN gi|553107 3/19 Oryza sativa 87 TIM Energy and isomerase, partial VSAEVAESTR;SLLGESNE (NCBI) ssp.japonica metabolism FVGDKVAYALSQGLK 8 RuBisCO activase IVDSFPGQSIDFFGALR; gi|1778414 2/6 Oryza sativa 112 - Photosynthesis VPIIVTGNDFSTLYAPLIR (NCBI) ssp.japonica 9 RuBisCO large TFQGPPHGIQVER;AIKFE gi|11466795 3/9 Oryza sativa 191 - Photosynthesis subunit FEPVDKLDS;GGLDFTKD (NCBI) ssp.japonica DENVNSQPFMR 10 Hypothetical protein TTVPDNDGGGGSR;EGIN gi|15289845 2/20 Oryza sativa 76 - Hypothetical LDLAR (NCBI) ssp.japonica N1 OSJNBa0088A01.12 CGSWSAVRGSGGRGAR; gi|38346805 3/8 Oryza sativa 97 F-box Hypothetical Hypothetical protein RGVCSTGR;WWSAAGGR (NCBI) ssp.japonica

11 Methyl-CpG binding AHPGGPASSEFDWGTGD gi|77557101 2/6 Oryza sativa 24 MBD DNA domain containing TPR;AHPGGPASSEFDWG (NCBI) ssp.japonica methylation protein, expressed TGDTPRR 12 Os01g0978100 IQGIGAGFVPR;LVVVVFP gi|115442595 3/10 Oryza sativa 131 CBS Hypothetical Hypothetical protein SFGER;VDVFIGGIGTGGTI (NCBI) ssp.japonica SGAGR 13 Hypothetical protein IFAEEAIAEFFDNPTVPRD gi|115448701 3/22 Oryza sativa 269 F0F1 Hypothetical EK;IDPELIAGFTIQYGR;K (NCBI) ssp.japonica ATP-D QIEEITSEFEMPAVTLDV 14 Hypothetical protein FSLAPLVPR;RPFAAIVGG gi|125552851 6/27 Oryza sativa 429 PGK Hypothetical SK;VILSSHLGRPK;LVSEL (NCBI) ssp. indica PNGSVLLLENVR;LASLA DLYVNDAFGTAHR;AED VIGPDVEKLVSELPNGSV LLLENVR 15 Os08g0504500 KDAAEYVYEVPEGWKER gi|115477166 3/12 Oryza sativa 187 PsbP Hypothetical Hypothetical protein ;DAAEYVYEVPEGWKER; (NCBI) ssp.japonica GTNGTDSEFFNPR O. 16 Rubisco Complexed GGLDFTEDDENVNSQPF gi|56966762 2/5 Oryza sativa 65 - Energy and longistam With 2- MR;MSGGDHIHAGTVVG (NCBI) ssp.japonica metabolism inata Carboxyarabinitol-1,5- K Bisphosphate 17 Os01g0978100 NLDSEVLDEVIEISSDEAV gi|115442595 1/5 Oryza sativa 112 CBS Hypothetical Hypothetical protein ETAK; (NCBI) ssp.japonica N2 Putative PS- I reaction VNYAGVSTNNYALDEIQ gi|34394725 2/24 Oryza sativa 127 - Energy and center subunit IV EVK;FLLAGGNGGSGGGG (NCBI) ssp.japonica metabolism ASR 18 RuBisCO large LTYYTPEYETKDTDILAA gi|11466795 7/18 Oryza sativa 483 RbcL Photosynthesis subunit FR;DTDILAAFR;TFQGPPH (NCBI) ssp.japonica GIQVER;GGLDFTKDDEN VNSQPFMR;NHGMHFR;N EGRDLAREGNEIIR;AIKFE FEPVDKLDS 19 GSH-dependent AAVGHPDTLGDCPFSQR; gi|6939839 6/53 Oryza sativa 423 - Defense and dehydro ascorbate WIPDSDVITQVIEEKYPTP (NCBI) ssp.japonica stress reductase 1 SLVTPPEYASVGSK;ALLT ELQALEEHLK;AHGPFING QNISAADLSLAPK;LYHLQ VALEHFK;IPEDLTNVHA YTEALFSR 20 Os06g0597400 NLESTLVR; gi|297725039 1/35 Oryza sativa 35 - Hypothetical Hypothetical protein (NCBI) ssp.japonica

N3 Putative PS-I reaction ESYWYNGTGSVVTVDQD gi|34394725 4/47 Oryza sativa 202 - Energy and center subunit IV PNTR;ESYWYNGTGSVVT (NCBI) ssp.japonica metabolism VDQDPNTRYPVVVR;RES YWYNGTGSVVTVDQDPN TRYPVVVR;AEEEAAAPP PPPPPAAEEKPAEAEAAV ATKEPAAAKPPPIGPK 21 Germin-like protein AAVTPAFVGQFPGVNGL GL814 2/15 Oryza sativa 205 - Defense and GISAAR;VTFLDDAQVK ORYSJ ssp.japonica stress (Swiss-Prot) N4 Cyclin-dependent DEQGKPIEGNK;VVLAIN gi|31442141 3/8 Oryza sativa 131 S/T Defense and kinase C NSMETGNSTAVS;EEAMG (NCBI) ssp.japonica Kinase stress VAHIHSK N5 UPF0496 protein 1 AISTLAVGVEVR;DLDSIR U496A 2/6 Oryza sativa ssp. 42 - Unknown VLINR ORYSI indica (Swiss-Prot) N6 unnamed protein GGLDFTKDDENVNSQPF gi|11955 2/5 Oryza sativa 86 rbcL Unknown product MR;DRFVFCAEAIYK (NCBI) ssp.japonica 22 Putative r40c1 protein- ILPWGDEAYAGGSANAP gi|24899397 3/15 Oryza sativa 111 lectin Defense and rice R;HSNSIKDEEGYPAFALV (NCBI) ssp.japonica stress NR;LVPYNPGYQDESVLW TESR 23 Ent-isokaur-15-ene MLPMSSACSGGQFPGASP KSL6 3/3.5 Oryza sativa 79 DDXX Defense and synthase HGIIPK;MIHISELPEVEYA ORYSJ ssp.japonica D/E stress LK;TGLELPVMQTDIDGII (Swiss-Prot) HIR AtpB:F1 ATP synthase beta subunit; TIM: Triose phosphate isomerase; CBS: Cystathionine beta-synthase; PGK: Phosphoglycerate kinase; RbcL= ribulose-1, 5-bisphosphate carboxylase/oxygenase large subunit; DDXXD/E: Asp-Asp-Xaa-Xaa-Asp/Glu