For: David Clugston and Ron Boyce

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For: David Clugston and Ron Boyce

FISH ECOLOGY RESEARCH LABORATORY COLLEGE OF NATURAL RESOURCES UNIVERSITY OF IDAHO P.O. BOX 441141 MOSCOW, ID 83844-1141

(208) 885-7614

26 November 2008

To: David Clugston (USACE) From: Matt Keefer and Chris Caudill

Re: Hourly detection distributions for adult salmon and steelhead at USACE dams

Introduction: This letter report summarizes the diel passage behavior of adult salmonids at lower Columbia and Snake River dams. The data were assembled to help managers identify the best times for fishway maintenance and other activities that potentially disrupt upstream adult salmonid passage. Adult PIT-tag data and the extensive radiotelemetry studies conducted by the UI and NMFS (e.g., Keefer et al. 2003, 2007, 2008a, 2008b; Burke et al. 2005; Stuehrenberg et al. 2005) have shown that the majority of adult activity in fishways occurs during daylight hours. The relatively limited night- time activity by salmonids has mostly been by fish that entered fishways late in the day.

Methods and Results: Here we generated time-of-day distributions of adult fish activity at fishway entrances (approaches and entries) and top-of-ladder sites (exits into forebays). These two areas bracket the fishway passage environment. We used five years of telemetry data for spring–summer Chinook salmon, fall Chinook salmon, and steelhead (2000-2004) and a single year for sockeye salmon (1997). In these years, all adult fish were collected and radio-tagged at Bonneville Dam. Sample sizes ranged from several hundred to more than 1,100 fish per run per year, and were smallest in 2004.

The level of telemetry coverage differed between dams and years. However, top-of- ladder sites were continuously monitored at all eight dams in all years and most fishway entrances were also monitored at all dams. The combination of large sample sizes and saturation antenna coverage resulted in large numbers of detections, particularly for fishway approaches (Table 1).

Time-of-day distributions are presented graphically in Figures 1-8. Results were generally similar across runs and dams, with the vast majority of tagged fish detected during daylight hours at each site. Distributions for fishway approaches typically showed a rapid increase in detections after dawn, often followed by a slight lull in mid-day and another increase in late afternoon. Distributions for fishway entrances were very similar to those for approaches, but averaged slightly later than approaches. Top-of-ladder distributions were later overall, reflecting the time fish used to pass through fishways and up ladders. At some dams, peak top-of-ladder passage occurred in the afternoon. At other sites, there was some evidence for two peak passage times, with a lull in mid-day. Differences between runs were relatively limited, and were likely related more to day length or water temperature at different seasons than to biological differences. It is possible that differences in swimming ability had an effect (e.g., the relatively late timing of sockeye salmon). Keefer & Caudill

These results indicate that adult salmonid activity at dams was consistently lowest at night. The hours between approximately 22:00 and 04:00 had the lowest fishway detection numbers (Figures 1-8). At most dams, ≤ 5% of the detections for each run were between midnight and 04:00 (Figure 9). This suggests that this time of night may be best time for maintenance or other actions, at least for adult salmonids. We note that adult Pacific lamprey are primarily nocturnal, and have passage timing distributions that are nearly the opposite of those for salmonids (see Figure 10).

Literature cited

Burke, B.J., K.E. Frick, M.L. Moser, T.J. Bohn, and T. C. Bjornn. 2005. Adult fall Chinook salmon passage through fishways at lower Columbia River dams in 1998, 2000, and 2001. Report of National Marine Fisheries Service to U.S. Army Corps of Engineers, Portland district.

Keefer, M.L, T.C. Bjornn, C.A. Peery, K.R. Tolotti, R.R. Ringe, P.J. Keniry, and L.C. Stuehrenberg. 2003. Adult spring and summer Chinook salmon passage through fishways and transition pools at Bonneville, McNary, Ice Harbor, and Lower Granite dams in 1996. Technical report 2003-5 of Idaho Cooperative Fish and Wildlife Research Unit to U.S. Army Corps of Engineers, Portland and Walla Walla districts.

Keefer, M. L., C. A. Peery, T. C. Bjornn, M. A. Jepson, K.R. Tolotti, R.R. Ringe, and L. C. Stuehrenberg. 2007. Adult salmon and steelhead passage through fishways and transition pools at The Dalles Dam, 1997-2001. Technical Report 2007-2 of Idaho Cooperative Fish and Wildlife Research Unit to U.S. Army Corps of Engineers, Portland and Walla Walla districts.

Keefer, M. L., C. A. Peery, T. C. Bjornn, M. A. Jepson, K.R. Tolotti, S. R. Lee, and L. C. Stuehrenberg. 2008a. Adult salmon and steelhead passage through fishways and transition pools at John Day Dam, 1997-2001. Technical Report 2008-4 of Idaho Cooperative Fish and Wildlife Research Unit to U.S. Army Corps of Engineers, Portland and Walla Walla districts.

Keefer, M. L., D. C. Joosten, C. L. Williams, C. M. Nauman, M. A. Jepson, C. A. Peery, T. C. Bjornn, R. R. Ringe, K.R. Tolotti, S. R. Lee, L. C. Stuehrenberg, M. M. Moser, and B. J. Burke. 2008b. Adult salmon and steelhead passage through fishways and transition pools at Bonneville Dam, 1997-2002. Technical Report 2008-5 of Idaho Cooperative Fish and Wildlife Research Unit to U.S. Army Corps of Engineers, Portland and Walla Walla districts.

Keefer, M.L., C.T. Boggs, C.A. Peery, and M.L. Moser. In review. Adult Pacific lamprey migration in the lower Columbia River: 2007 radiotelemetry and half duplex PIT-tag studies. Technical Report of Idaho Cooperative Fish and Wildlife Research Unit to U.S. Army Corps of Engineers, Portland and Walla Walla districts.

2 Keefer & Caudill

Stuehrenberg, L. C., M. L. Keefer, C. A. Peery, K. R. Tolotti, R. R. Ringe, T. C. Bjornn, and B. Burke. 2005. Adult steelhead passage through fishways and transition pool at Bonneville, McNary, and Lower Granite dams - 1996. Technical Report 2005-6 of Idaho Cooperative Fish and Wildlife Research Unit to U.S. Army Corps of Engineers, Portland and Walla Walla districts.

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Table 1. Total numbers of fishway approaches, entries, and ladder exits recorded for radio-tagged adult salmonids at lower Columbia and Snake River dams. Spring–summer Chinook salmon, fall Chinook salmon, and steelhead numbers are totals for 2000-2004 migration years; sockeye numbers are for 1997. Sp–Su Fall Behavior Dam Chinook Chinook Steelhead Sockeye Fishway approach BON 64,446 51,202 47,763 6,685 TDA 27,499 17,165 18,800 727 JDA 182,927 88,283 63,884 2,249 MCN 35,925 15,482 18,644 1,957 IHA 15,619 1,778 8,204 - LMN 34,996 3,608 16,027 - LGO 42,616 2,246 16,191 - LGR 45,744 3,044 21,444 -

Fishway entry BON 9,353 8,571 9,706 1,115 TDA 8,983 9,066 9,733 526 JDA 24,891 22,832 18,559 1,201 MCN 8,185 5,921 5,058 676 IHA 3,007 735 2,549 - LMN 4,848 1,417 4,641 - LGO 3,782 891 4,557 - LGR 4,177 563 3,128 -

Ladder exit BON 4,629 3,122 3,547 630 TDA 4,294 3,151 3,743 505 JDA 3,616 2,379 3066 446 MCN 3,272 1,902 2,696 196 IHA 1,733 257 1,890 - LMN 1,552 238 1,939 - LGO 1,662 217 1,812 - LGR 1,680 180 1,686 -

3 Keefer & Caudill

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t n n 6 6 e e c c r r e e P P 4 4

2 2

Bonneville: Sp/Su Chinook Bonneville: Fall Chinook 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t

n 6 n 6 e e c c r r e e P P 4 4

2 2

Bonneville: Steelhead Bonneville: Sockeye 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day Figure 1. Time-of-day detection distributions for adult salmonids at Bonneville Dam, including 5 years of data for spring–summer Chinook salmon, fall Chinook salmon, and steelhead, and one year for sockeye salmon.

4 Keefer & Caudill

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t

n 6 n 6 e e c c r r e e P P 4 4

2 2

The Dalles: Sp/Su Chinook The Dalles: Fall Chinook 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t n 6 n 6 e e c c r r e e P P 4 4

2 2

The Dalles: Steelhead The Dalles: Sockeye 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day Figure 2. Time-of-day detection distributions for adult salmonids at The Dalles Dam, including 5 years of data for spring–summer Chinook salmon, fall Chinook salmon, and steelhead, and one year for sockeye salmon.

5 Keefer & Caudill

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t

n 6 n 6 e e c c r r e e P P 4 4

2 2

John Day: Sp/Su Chinook John Day: Fall Chinook 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t

n 6 n 6 e e c c r r e e P P 4 4

2 2

John Day: Steelhead John Day: Sockeye 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day Figure 3. Time-of-day detection distributions for adult salmonids at John Day Dam, including 5 years of data for spring–summer Chinook salmon, fall Chinook salmon, and steelhead, and one year for sockeye salmon. .

6 Keefer & Caudill

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t

n 6 n 6 e e c c r r e e P P 4 4

2 2

McNary: Sp/Su Chinook McNary: Fall Chinook 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t n 6 n

e 6 e c c r r e e P P 4 4

2 2

McNary: Steelhead McNary: Sockeye 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day Figure 4. Time-of-day detection distributions for adult salmonids at McNary Dam, including 5 years of data for spring–summer Chinook salmon, fall Chinook salmon, and steelhead, and one year for sockeye salmon.

7 Keefer & Caudill

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t

n 6 n 6 e e c c r r e e P P 4 4

2 2

Ice Harbor: Sp/Su Chinook Ice Harbor: Fall Chinook 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day

12 Approach Entry 10 Ladder exit

8 ) % (

t

n 6 e c r e P 4

2

Ice Harbor: Steelhead 0 0 4 8 12 16 20 24 Time of day Figure 5. Time-of-day detection distributions for adult salmonids at Ice Harbor Dam, including 5 years of data for spring–summer Chinook salmon, fall Chinook salmon, and steelhead, and one year for sockeye salmon.

8 Keefer & Caudill

12 12

Approach Approach Entry 16.8% Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t

n 6 n 6 e e c c r r e e P P 4 4

2 2

L. Monumental: Sp/Su Chinook L. Monumental: Fall Chinook 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day

12 Approach Entry 10 Ladder exit

8 ) % (

t

n 6 e c r e P 4

2

L. Monumental: Steelhead 0 0 4 8 12 16 20 24 Time of day Figure 6. Time-of-day detection distributions for adult salmonids at Lower Monumental Dam, including 5 years of data for spring–summer Chinook salmon, fall Chinook salmon, and steelhead, and one year for sockeye salmon.

9 Keefer & Caudill

12 12 Approach Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t

n 6 n 6 e e c c r r e e P P 4 4

2 2

Little Goose: Sp/Su Chinook Little Goose: Fall Chinook 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day

12 Approach Entry 10 Ladder exit

8 ) % (

t

n 6 e c r e P 4

2

Little Goose: Steelhead 0 0 4 8 12 16 20 24 Time of day Figure 7. Time-of-day detection distributions for adult salmonids at Little Goose Dam, including 5 years of data for spring–summer Chinook salmon, fall Chinook salmon, and steelhead, and one year for sockeye salmon.

10 Keefer & Caudill

12 12

Approach 13.9% Approach Entry Entry 10 Ladder exit 10 Ladder exit

8 8 ) ) % % ( (

t t

n 6 n 6 e e c c r r e e P P 4 4

2 2

L. Granite: Sp/Su Chinook Lower Granite: Fall Chinook 0 0 0 4 8 12 16 20 24 0 4 8 12 16 20 24 Time of day Time of day

12 Approach Entry 12.9% 10 Ladder exit

8 ) % (

t

n 6 e c r e P 4

2

Lower Granite: Steelhead 0 0 4 8 12 16 20 24 Time of day Figure 8. Time-of-day detection distributions for adult salmonids at Lower Granite Dam, including 5 years of data for spring–summer Chinook salmon, fall Chinook salmon, and steelhead, and one year for sockeye salmon.

11 Keefer & Caudill

Spring-Summer Chinook Fall Chinook 14 14

0-4 h 0-4 h 12 20-24 h 12 20-24 h

Fishway 10 10 approach Top-of-ladder ) ) % %

( 8 ( 8

t t n n e e

c Fishway c Fishway r 6 Fishway r 6 e approach e P Entry P Entry

4 4 Top-of-ladder

2 2

0 0

Dam Dam

Steelhead Sockeye 14 14

0-4 h 0-4 h 12 20-24 h 12 20-24 h Top-of-ladder

10 10 Fishway ) Fishway ) Fishway

% approach %

( 8 ( 8

t approach t Entry n

Top-of-ladder n e Fishway e c c r 6 r e 6 Entry e P P

4 4

2 2

0 0

Dam Dam Figure 9. Percentages of each run detected between 0–4 h (gray bars) and 20-24 h (black bars), by site, run, and dam. Dams from left to right: BON, TDA, JDA, MCN, IHA, LMN, LGO, LGR.

120

Bonneville The Dalles 100 John Day McNary ) n ( 80 y e r p m a l

60 f o

r e b

m 40 u N

20

0 0 0 0 0 0 0 0 0 :0 :0 :0 :0 :0 :0 :0 :0 0 0 0 0 0 0 0 0 :0 :0 :0 :0 :0 :0 :0 :0 1 4 7 0 3 6 9 2 0 0 0 1 1 1 1 2

Time of day Figure 10. Distributions of the times that HD PIT-tagged adult Pacific lamprey were detected passing top-of-ladder sites at Bonneville, The Dalles, John Day, and McNary dams in 2007. (From Keefer et al. in review).

12

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