For Online Publication Only s1

FOR ONLINE PUBLICATION ONLY

Fragment sequence and the individual score of each protein in this paper

104 hypothetical protein OsI_26859 Query Score Peptide 51 109 M.AVSFTNVSSEAGHK.K + Acetyl (Protein N-term) 40 63 K.KLDEYLLTR.S 26 24 K.LDEYLLTR.S 44 74 R.WFTHIDALLR.L 73 140 K.SSVLLDVKPWDDETDMTKLEEAVR.N 31 67 K.MEGLLWGASK.L 18 59 K.LVPVGYGIK.K

128 14-3-3-like protein GF14-D Query Score Peptide 68 63 M.SPAEPTREESVYK.A 96 86 K.LAEQAERYEEMVEYMER.V 52 44 R.YEEMVEYMER.V 74 140 R.AAGGASGGEELTVEER.N 55 88 R.IISSIEQKEEGR.G 25 63 R.GNDAHAATIR.S 22 67 R.GKIEAELAR.I 84 110 K.AAQDIALADLAPTHPIR.L

202 membrane steroid binding protein 1, putative, expressed Query Score Peptide 76 149 R.DEPEAEPLPPPVQLGEVSEEELR.Q 51 36 K.GQIYDVTQSR.M

207 putative C2 domain-containing protein Query Score Peptide 70 62 R.YYDPSPYPAPYGQPAGTR.D

402 ankyrin repeat domain protein 2, putative, expressed Query Score Peptide 76 127 K.SEEASSAAEEQPPQAAAPPPR.R 58 68 K.NTALHYAAGYGR.K

502 putative RAD23 protein Query Score Peptide 49 137 K.GTNFEIEASPEASVAEVKR.I 67 112 R.IIESTQGQNVYPADQQMLIHQGK.I 43 101 K.APVSQSQPATPVASVAR.T 11 43 R.AAYNNPER.A 62 156 R.AIDYLYSGIPENVEPPQPVAR.A 32 96 R.LIQENQAEFLR.L 14 23 R.LEAMGFNR.E + Oxidation (M) 705 hypothetical protein Query Score Peptide 65 43 -.MDSTKQDFQPR.T + Acetyl (Protein N-term) 39 19 K.LWPPSESTR.L 24 19 R.SPNLESFR.C

808 OSJNBb0034I13.6 protein Query Score Peptide 41 80 K.LALGTLALEDALSTGSPIR.T 15 17 R.TEVDQLRK.S 19 12 K.FNSLKETVR.H 30 96 R.GLQGSEAAEIASEWVK.Q

1005 drought-induced S-like ribonuclease Query Score Peptide 44 70 K.YGYPSEDFFVK.S 62 123 K.SFMTFDSSENTAVVR.C 64 69 K.SFMTFDSSENTAVVR.C + Oxidation (M)

2210 hypothetical protein OsI_09105 Query Score Peptide 95 145 M.ASVASFPVINMENLETEER.G + Acetyl (Protein N-term) 58 88 K.GIDWESTFFVR.H 64 51 K.QFASEIEKLSER.V 48 85 K.AFAGSNGPTFGTK.V 53 73 K.DGEWVDVPPMR.H 86 110 R.HAIVANIGDQLEVITNGR.Y 28 33 R.VLTRPDGNR.M 23 55 R.ADAAAAAYPR.F 74 90 R.FVFEDYMNLYVR.H

4404 chloroplast translational elongation factor Tu Query Score Peptide 61 73 K.KYDEIDAAPEER.A 52 54 K.YDEIDAAPEER.A 82 73 R.GITINTATVEYETETR.H 89 95 K.DQVDDEELLQLVELEVR.E 40 77 K.VGDTVDIVGIR.E 69 83 K.VGDTVDIVGIRETR.N 74 108 K.TMDDAMAGDNVGLLLR.G 29 30 R.GMQKDDIER.G

5016 eukaryotic translation initiation factor 5A-2, putative, expressed Query Score Peptide 34 81 M.SDSEEHHFESK.A + Acetyl (Protein N-term) 44 143 M.SDSEEHHFESKADAGASK.T + Acetyl (Protein N-term) 25 73 K.TYPQQAGTIR.K 30 23 K.TYPQQAGTIRK.N 41 33 K.DDLRLPSDEALLTQIK.D

5314 aspartate-semialdehyde dehydrogenase family protein, expressed Query Score Peptide 84 164 R.AHAPAAVASGAVVVDNSSAFR.M 96 127 R.AHAESVNLQFEKPLDEDTAR.E 48 43 R.AAEGVTIIDDR.A

6103 putative mitochondrial NADH:ubiquinone oxidoreductase 29 kDa subunit Query Score Peptide 14 6 R.VRWDYR.G 21 23 R.WDYRGQR.Q 34 47 R.QLVPLGQWMPK.V 50 82 R.RIPTGELWAGNPAR.F 41 104 R.IPTGELWAGNPAR.F

6108 glucanase Query Score Peptide 50 65 R.NNIQAYPSVSFR.Y 84 101 R.YVAVGNEVAGGATSSLVPAMENVR.G 53 64 R.IYNQNLINHVGR.G

6303 chain A, crystal structure of rice alpha-galactosidase Query Score Peptide 40 56 R.DSQGNFVPNR.Q 13 34 R.QTFPSGIK.A 24 59 K.ENPATWAGR.M 55 117 R.TTGDIADNWGSMTSR.A 68 130 K.VQSDNGLEVWAGPLSNNR.K 73 74 K.VQSDNGLEVWAGPLSNNRK.A 6 30 K.AVVLWNR.Q

8012 putative temperature stress-induced lipocalin Query Score Peptide 81 92 R.QPHMDEEVYGQLVER.A

8102 proteasome subunit alpha type-6 Query Score Peptide 44 65 R.HITIFSPEGR.L 21 17 K.SAGVTSIGVR.G 67 109 K.YIGLLATGLTADAR.S 3 31 R.SLVYQAR.N 37 51 K.ATEIEVGVVR.K 83 96 R.ALTTEEIDQHLTAISER.D 89 129 R.ALTTEEIDQHLTAISERD.-

8210 hypothetical protein OsI_12592 Query Score Peptide 57 86 R.VSIAHQTAFALR.L 69 98 R.LAAALSSPAHPAGGAGR.N 64 45 K.EILPPGSVDHTTR.L 42 15 K.LPYQQGGDKR.Q 17 28 R.QVTVGQFK.L

9106 B1358B12.15 Query Score Peptide 36 16 R.AVIFDRFR.G 77 28 R.TRPHNFSSNSGTK.G 50 39 K.KQVAQQEAER.S 42 20 K.QVAQQEAER.S 12 29 R.EIAAELAR.S 74 90 R.SPNVAYVPAGDNGR.M

9202 putative r40c1 protein - rice Query Score Peptide 37 84 R.EGNVVLAPTNPR.D 55 143 K.ILPWGDEAYAGGSANAPR.G 25 48 K.ADEGFSVTVR.G 59 96 R.HSNSIKDEEGYPAFALVNR.V 41 61 K.DEEGYPAFALVNR.V 71 84 K.LVPYNPGYQDESVLWTESR.D

123 14-3-3-like protein GF14-D Query Score Peptide 81 56 M.SPAEPTREESVYK.A 115 102 K.LAEQAERYEEMVEYMER.V 89 152 R.AAGGASGGEELTVEER.N 67 104 R.IISSIEQKEEGR.G 27 71 R.GNDAHAATIR.S 23 67 R.GKIEAELAR.I 15 27 K.MKGDYHR.Y 54 66 R.YLAEFKSGDER.K 105 134 K.AAQDIALADLAPTHPIR.L

129 hypothetical protein OsI_19958 Query Score Peptide 54 79 K.LFGSWASSYTHR.V 23 32 K.KVPVLVHR.G 3 42 K.VPVLVHR.G 51 81 K.LGPAVGAVFASTGK.E 66 101 R.DFEAQEEVKETIPSVDR.L

135 Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL7 Query Score Peptide 36 48 M.GDGAEAAGATAASR.F + Acetyl (Protein N-term) 50 101 R.VFGDAALDLGHELVR.R 52 32 R.VFGDAALDLGHELVRR.G 63 139 R.ALMAVEISGESVGEVIVVQDMHER.K 65 98 K.MEQYTQLHQEVAPATSWEISELGYGR.T

612 OSJNBa0008M17.5 Query Score Peptide 64 24 K.EGSSEEIHSLRK.T 102 21 K.ELNDAYHTIANQEEQVSVR.E 92 63 R.EVQWEADQEHSVSELK.A 109 39 R.EVQWEADQEHSVSELKAQR.Q 1004 ras-related GTP binding protein possessing GTPase activity Query Score Peptide 51 62 -.MNPEYDYLFK.L + Acetyl (Protein N-term) 67 76 K.TIKLQIWDTAGQER.F 46 91 K.LQIWDTAGQER.F 65 38 K.LQIWDTAGQERFR.T 23 57 R.TITSSYYR.G 96 199 R.GAHGIIVVYDVTDQESFNNVK.Q 28 44 K.QWLNEIDR.Y 81 93 K.QWLNEIDRYASENVNK.L 30 54 K.AFMTMAGEIK.N

1007 Putative GTP-binding protein YPTM2 Query Score Peptide 58 44 -.MNPEYDYLFK.L + Acetyl (Protein N-term) 71 45 K.TIKLQIWDTAGQER.F 52 67 K.LQIWDTAGQER.F 24 40 R.TITSSYYR.G 32 31 K.QWLNEIDR.Y 86 58 K.QWLNEIDRYASDNVNK.L 82 61 R.MASQPAAANARPPTVQIR.G 84 39 R.MASQPAAANARPPTVQIR.G + Oxidation (M)

1014 Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative, expressed Query Score Peptide 54 170 M.ATATNGNASAAAAAADSAVQEPPHK.I + Acetyl (Protein N-term) 23 58 K.KLSENAVLPSR.G 15 48 K.LSENAVLPSR.G 34 114 K.AMVPTDLSIAIPEGTYAR.V 36 79 K.AMVPTDLSIAIPEGTYAR.V + Oxidation (M) 30 133 K.HSIDVGAGVIDADYR.G 52 85 R.GPVGVILFNHSDTDFAVKPGDR.I

1116nuclear RNA binding protein A-like Query Score Peptide 49 65 K.SVSINEFLKPAEGER.Y 65 83 R.GPYSTSAPSIEDQAQFPTLGGKPR.A

1212 OSJNBa0058K23.5 protein Query Score Peptide 85 45 K.SATSLYEQAAIAYR.F 41 6 K.YSDAAATFLR.L

2122 Putative inositol-1-monophosphatase Query Score Peptide 29 67 R.AGAEVIMEAVNKPR.N 26 32 R.MDGGEFTVFDR.S 35 51 R.SVLVSNGVVHDQLLDR.I 2123 H0801D08.15 Query Score Peptide 14 2 R.NGLSGYER.M 37 50 R.STNEALLVIEAYR.T 22 8 K.SFEHPMNR.L

3216 Putative uncharacterized protein OSJNBa0017K09.8 Query Score Peptide 57 46 M.ATHPASPVAGGEK.A + Acetyl (Protein N-term) 37 24 K.ATPPSTPPPVR.L 69 75 R.LAGGAAAAIQPNSPR.F 40 26 R.LGLSAMIMGSR.G 113 177 R.YPDDGAAAGGGEAVGDELR.T 125 40 R.TVPEDEPVYHEAPEGQKEN.-

3801 Cell division cycle protein 48, putative, expressed Query Score Peptide 25 28 R.KGDLFLVR.G 15 12 R.EIFDKAR.Q 78 23 K.YQAFAQTLQQSR.

5001 Eukaryotic translation initiation factor 5A-2, putative, expressed Query Score Peptide 28 67 M.SDSEEHHFESK.A + Acetyl (Protein N-term) 45 123 M.SDSEEHHFESKADAGASK.T + Acetyl (Protein N-term) 20 63 K.TYPQQAGTIR.K 23 10 K.TYPQQAGTIRK.N 42 59 K.DDLRLPTDDNLLSQIK.D

5012 Eukaryotic translation initiation factor 5A-2, putative, expressed Query Score Peptide 56 82 M.SDSEEHHFESK.A + Acetyl (Protein N-term) 78 132 M.SDSEEHHFESKADAGASK.T + Acetyl (Protein N-term) 39 70 K.TYPQQAGTIR.K 51 35 K.TYPQQAGTIRK.N 72 113 K.DDLRLPSDEALLTQIK.D 54 91 R.LPSDEALLTQIK.D

5803 putative heat shock protein, 5'-partial Query Score Peptide 22 20 K.TAIAEGLAQR.I 44 53 R.IVQGDVPQALTNR.R 55 15 R.IVQGDVPQALTNRR.L 34 14 K.YIEKDPALER.R 31 22 R.VNVEIQQAER.E 20 19 K.YGSLNALQR.Q 71 47 R.LIGAPPGYVGYEEGGQLTEAVR.R

6004 putative cysteine proteinase inhibitor Query Score Peptide 94 192 M.AGHVLGGAHDAPSAANSVETDALAR.F + Acetyl (Protein N-term) 38 44 R.FAVDEHNKR.E 32 65 R.ENALLEFVR.V 3 21 K.ELQEFR.N 73 91 R.NTGDATTFTNADLGAK.K 28 17 K.KGGHEPGWR.D 18 8 K.GGHEPGWR.D