Program of International Workshop on Computational Proteomics

Place: LT6 at Teaching Building at Chak Cheung Street,

The Chinese University of Hong Kong

December 18, 2010

8:30-8:45am Opening: Dr. FangXiang Wu, Workshop Co-Chair

Session 1: Chair: Dr. Antonio Mucherino

8:45-9:10am: S2210 Jakub Galgonek and David Hoksza, "SProt - From Local to Global Protein Structure Similarity"

9:10-9:35am: S2204 WenJun Lin, FangXiang Wu, Jinhong Shi, Jiarui Ding, and Wenjun Zhang, "An adaptive approach to denoising tandem mass spectra" 9:35-10:00am: S2212 Qian Xu, Hong Xue, and Qiang Yang, "SimpleTrPPI: A simple method for transferring knowledge between interaction networks for PPI prediction"

10:00-10:20am: Coffee break

Session 2: Chair: Dr. Habtom Ressom

10:20:-10:45am: B440 Shih-Chieh Su, Cheng-Jian Lin, and Chuan-Kang Ting, "An efficient hybrid of hill-climbing and genetic algorithm for 2D triangular protein structure prediction" 10:45-11:10am: S2206 Li Wu, Qi Dai, Bin Han, Lei Zhu, and Lihua Li, "Prediction of Protein Structural Class Using a Combined Representation of Protein-sequence Information and Support Vector Machine" 11:10-11:35am: S2203 Jian Zhang, Ian McQuillan, and FangXiang Wu, "Speed Improve- ments of Peptide-Spectrum Matching Using SIMD Instructions" 11:35-12:00am: S2205 Ling Sing Yung, Chao Yang, Mohammed Dakna, Harald Mischak, and Weichuan Yu, "SyncPro : A Synchronized Visualization Tool for Differential Analysis of Proteomics Data Sets" 12:00-12:25pm: S2208 Shikui Tu, Lei Xu, and Runsheng Chen, "A Binary Matrix Factorization Algorithm for Protein Complex Prediction" 12:30-1:30pm: Lunch

Session 3: Chair: Dr. ShaoWu Zhang

13:30:-13:55pm: S2201 Carlile Lavor, Leo Liberti, and Antonio Mucherino, "On the solution of molecular distance geometry problems with interval data". 13:55-14:20pm: B201 Liang Yu, Lin Gao, and Chuiliang Kong, "Identification of core- attachment complexes based on mining maximal frequent patterns in protein-protein interaction networks" 14:20-14:40pm: S2207: Wu Jiang and Shenggui Zhang, "Computing the Second- and Third- order Connectivity Indices of \beta-Cyclodextrins" 14:40-15:00pm: B479: Stephanus Daniel Handoko, Tran To Chinh Su, Chee Keong Kwoh, and Yew Soon Ong, "Structural Analysis of (TCR–)HLA/peptide Complexes: An Initial Study"

15:00-15:20pm: Coffee break

Session 4: Chair: Dr. Lin Gao

15:20:-15:45pm: S2209 Yingzhuo Wei, Shaowu Zhang, Chunhui Zhao, Feng Yang, and Quan Pan, "Network-based Modeling for Analyzing the Human Skin Microbiome" 15:45-16:10pm: B509 Leepika Tuli, Tsung-Heng Tsai, Rency Varghese, Amrita Cheema, and Habtom Ressom, "Using a Spike-In Experiment to Evaluate Analysis of LC-MS Data" 16:10-14:35pm: B464 Jiqing Ke, Lei Zhu, Bin Han, Qi Dai, Yaojia Wang, Lihua Li, Shenhua Xu, Hanzhou Mou, and Zhiguo Zheng, "Sparse Representation based feature selection for Mass Spectrometry Data" 16:35-17:00pm: B352 Peipei Li, Ho Sun Shon, Gouchol Pok, and Keun Ho Ryu, "Eighth- Sphere Exposure: A Three-Dimensional Solvent Exposure Measure". 17:00-17:25pm: B549 Seungmook Lee, Min-Seok Kwon, Hyoung-Joo Lee, Young-Ki Paik, Jae K Lee, and Taesung Park, "FISH: Finding of Identical Spectra Set for Homogenous Peptide using Two-Stage Clustering Algorithm"

Closing remarks: Dr. FangXiang Wu, Workshop Co-Chair

Note: Each speaker will have about 20 (for 25-min interval) or 15 (20-min interval) minutes for presentation and 5 minutes for questions and discussions.