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Supplementary Data 2: (A) Genbank Accession Numbers for the Genome Segments from Each

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Supplementary Data 2: (A) Genbank Accession Numbers for the Genome Segments from Each

Supplementary data 2: (a) GenBank accession numbers for the genome segments from each study strain. RVA, Group A rotaviruses; wt, wildtype; KEN, Kenya; ZMB, Zambia; ZAF, South Africa; UGA, Uganda; ZWE, Zimbabwe; TZA, Tanzania; TGO, Togo; MRC, Medical Research Council; DPRU, Diarrhoeal Pathogens Research Unit; VP, viral structural protein; NSP, viral non-structural protein.

Study strain Accession numbers for each genome segment VP7 VP4 VP6 VP1 VP2 VP3 NSP1 NSP2 NSP3 NSP4 NSP5 RVA/Human-wt/KEN/MRC-DPRU1606/2009/G8P[4] KF636250 KF636248 KF636249 KF636245 KF636246 KF636247 KF636240 KF636241 KF636242 KF636243 KF636244 RVA/Human-wt/ZMB/MRC-DPRU1621/2008/G8P[4] KF636362 KF636360 KF636361 KF636357 KF636358 KF636359 KF636352 KF636353 KF636354 KF636355 KF636356 RVA/Human-wt/ZMB/MRC-DPRU3463/2009/G8P[4] KF636316 KF636314 KF636315 KF636311 KF636312 KF636313 KF636306 KF636307 KF636308 KF636309 KF636310 RVA/Human-wt/ZAF/MRC-DPRU1061/2009/G2P[4] KF636327 KF636325 KF636326 KF636322 KF636323 KF636324 KF636317 KF636318 KF636319 KF636320 KF636321 Deposited strains awaiting accession numbers RVA/Human-wt/UGA/MRC-DPRU1922/2008/G8P[4] KJ752667 KJ752665 KJ752666 KJ752662 KJ752663 KJ752664 KJ752657 KJ752658 KJ752659 KJ752660 KJ752661 RVA/Human-wt/ZWE/MRC-DPRU3347/2010/G8P[4] KJ752463 KJ752461 KJ752462 KJ752458 KJ752459 KJ752460 KJ752453 KJ752454 KJ752455 KJ752456 KJ752457 RVA/Human-wt/TZA/MRC-DPRU4568/2011/G8P[4] KJ751618 KJ751616 KJ751617 KJ751613 KJ751614 KJ751615 KJ751608 KJ751609 KJ751610 KJ751611 KJ751612 RVA/Human-wt/TZA/MRC-DPRU4576/2010/G8P[4] KJ751607 KJ751605 KJ751606 KJ751602 KJ751603 KJ751604 KJ751597 KJ751598 KJ751599 KJ751600 KJ751601 RVA/Human-wt/ZAF/MRC-DPRU81/2007/G2P[4] KJ752410 KJ752408 KJ752409 KJ752405 KJ752406 KJ752407 KJ752400 KJ752401 KJ752402 KJ752403 KJ752404 RVA/Human-wt/ZAF/MRC-DPRU82/2012/G2P[4] KJ752210 KJ752208 KJ752209 KJ752205 KJ752206 KJ752207 KJ752200 KJ752201 KJ752202 KJ752203 KJ752204 RVA/Human-wt/TGO/MRC-DPRU5124/2010/G2P[4] KJ752166 KJ752164 KJ752165 KJ752161 KJ752162 KJ752163 KJ752156 KJ752157 KJ752158 KJ752159 KJ752160 RVA/Human-wt/TGO/MRC-DPRU2201/XXXX/G2P[4] KJ752144 KJ752142 KJ752143 KJ752139 KJ752140 KJ752141 KJ752134 KJ752135 KJ752136 KJ752137 KJ752138 (b) GenBank accession numbers for the genome segments from each reference strain used in the phylogenetic analyses.VP, viral protein; G, glycoprotein; tc, tissue culture; wt, wildtype.

GENE STRAIN NAME ACCESSION #

VP7(G8)

RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650124.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554153.1

RVA/Human-tc/MWI/QEC29/2005/G8P[6] AB749183.1

RVA/Human-tc/MWI/MW23/1999/G8P[6] AJ278254.1

Rotavirus Human-wt/MW4097/2000/G8P[8] FJ386442.1

Rotavirus Hu/MW4103/2000/G8P[8] FJ386443.1

RVA/Human-wt/NGA/HMG189/1989/G8P[X] X98918.1

RVA/Human-tc/KEN/1290/1991/G8 EU488721.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB749165.1

Rotavirus Human-wt/MW1470/2001/G8P[4] FJ386440.1

Rotavirus Human-wt/KY6914/2002/G8P[4] FJ386445.1

Rotavirus Human-wt/KY6950/2002/G8P[6] FJ386446.1

RVA/Cow-wt/NGA/NGRBg8/1997/G8P[1] AF361439.1

RVA/Human-wt/NGA/HMG035/2000/G8P[1] AF359359.1

RVA/Human-wt/ZAF/GR570/1987/G8P[6] AF143688.1

RVA/Human-wt/ZAF/UP30/2000/G8P[6] AF143690.1

RVA/Human-wt/HUN/BP1062/2004/G8P[14] FN665696.1

RVA/Human-wt/JPN/AU109/1994/G8P[X] AB272753.1

RVA/Human-wt/EGY/EGY2295/1995/G8P[14] AF104104.1

RVA/Cow-tc/IND/79/2007/G8P[14] GU984761.1

RVA/Cow-tc/IND/68/2007/G8P[14] GU984760.1

RVA/Human-wt/HRV/CR2006/2006/G8P[8] JQ988904.1

RVA/Human-wt/GER/GER1H-09/2009/G8P[4] GQ414545.1

RVA/Human-wt/USA/US09Ro104/2009/G8P[4] JN711112.1

RVA/Human-wt/CMR/6782/2000/G8P[6] EF218669.1

RVA/Human-tc/CMR/6809/2000/G8P[6] EF218674.1 RVA/Human-tc/TUN/6854/2002/G8P[8] EF218676.1

RVA/Human-wt/SVN/SI-885/2006/G8P[8] DQ995179.1

RVA/Human-tc/CMR/6736/2004/G8P[8] EF218678.1

RVA/Human-tc/ETH/6810/2000/G8P[8] EF218675.1

RVA/Human-wt/KEN/B12/1987/G8P[1] HM627547.1

RVA/Human-wt/JPN/KAG75/1995-96/G8P[X] AB077054.1

RVA/Simian-tc/USA/PTRV/1990/G8P[1] FJ422138.1

RVA/Human-wt/AUS/WAG8.3/2007/G8P[14] GQ398018.1

RVA/Human-wt/KOR/KJ16/2004/G8P[7] FJ206041.1

RVA/Human-wt/KOR/C-1/2006/G8P[7] KF500223.1

RVA/Human-wt/KOR/KJ172/2004/G8P[7] FJ206079.1

RVA/Vicuna-wt/ARG/C75/2010/G8P[14] JX070052.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347105.1

RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] AF545859.1

RVA/Human-tc/MWI/QOP387/2007/G8P[4] AB749173.1

RVA/Human-wt/COD/DRC88/2003/G8P[8] DQ005109.1

RVA/Cow-tc/USA/Cody1801/1969/G8P[1] U14999

VP7(G2)

RVA/Human-wt/JPN/J-4787/2001-2003/G2P[4 DQ904511.1

RVA/Human-wt/JPN/KO-2/XXXX/G2P[X] AF401754.1

RVA/Human-wt/CNH/CH-107/2001-2003/G2P[X] FJ598025.1

RVA/Human-wt/VN/VN-19/2001-2003/G2P[X] DQ904513.1

RVA/Human-wt/CHN/CH-128/2001-2003/G2P[X] FJ598027.1

RVA/Human-wt/CHN/CH-130/2001-2003/G2P[X] FJ598028.1

RVA/Human-wt/IND/Sc27/XXXX/G2P[X] AJ293722.1

RVA/Human-wt/IRA/CIT-220RV/1997-1999/G2P[4] AF254140.1

RVA/Human-wt/THA/CMH019/2003/G2P[X] EF199721.1

RVA/Human-wt/IND/253/XXXX/G2P[4] X95370.1

RVA/Human-wt/TWN/TE65/1993/G2P[X] AF106295.1

RVA/Human-tc/IND/116E3D/1993/G2P[4] AB081593.1 RVA/Human-wt/TWN/TD69/1992/G2P[X] AF106293.1

RVA/Human-wt/JPN/PAK458/XXXX/G2P[X] D50126.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657176.1

RVA/Human-wt/ZAF/NG4585/99/1999/G2P[6] AY261351.1

RVA/Human-wt/CHN/XJ00-486/2000/G2P[6] DQ321493.1

RVA/Human-wt/IND/N1/XXXX/G2P[X] DQ478584.1

RVA/Human-wt/ITA/PA83/2007/G2P[4] KC178812.1

RVA/Human-wt/IND/SC-4/XXXX/G2P[X] AJ293718.1

RVA/Human-wt/ZAF/TN1529/99/1999/G2P[4] AY261357.1

RVA/Human-wt/ZAF/4476PT/97/1997/G2P[X] AY261343.1

RVA/Human-wt/KEN/KY3303/99/1999/G2P[X] AY261350.1

RVA/Human-wt/AUS/94A/XXXX/G2P[X] U73950.1

RVA/Human-wt/JPN/JAPAN137/XXXX/G2P[X] D50121.1

RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] AY787646.1

RVA/Human-wt/JPN/PAK426/XXXX/G2P[X] D50125.1

RVA/Human-wt/JPN/JAPAN0022/XXXX/G2P[X] D50117.1

RVA/Human-wt/JPN/CHIN-5/XXXX/G2P[X] D50114.1

RVA/Human-wt/JPN/92H102/XXXX/G2P[X] AB091361.1

RVA/Human-wt/JPN/JAPAN085/XXXX/G2P[X] D50120.1

RVA/Human-wt/JPN/JAPAN076/XXXX/P[X] D50119.1

RVA/Human-wt/JPN/TMC-II/XXXX/G2P[X] D50127.1

RVA/Human-wt/JPN/KUNJPN/XXXX/G2P[X] D50124.1

RVA/Human-wt/ZAF/514GR/87/19987/G2P[4] AY261338.1

RVA/Human-wt/ZAF/410GR/85/1985/G2P[4] AY261335.1

RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650124.1

RVA/Human-tc/TWN/TA3/1981/G2P[X] AF106280.1

RVA/Human-tc/TWN/TW6/1981/G2P[X] AF044338.1

RVA/Human-tc/AUS/95A/XXXX/G2P[X] U73955.1

RVA/Human-tc/AUS/92A/XXXX/G2P[X] U73947.1

RVA/Human-tc/USA/P/1974/G3P[8] M37355.1

RVA/Human-wt/IND/S2/XXXX/G2P[4] M11164 VP1

RVA/Cow-tc/USA/WaxUK/2002/GXP[8] JF990828.1

RVA/Human-wt/COD/DRC86/2003/G8P[6] DQ005125.1

RVA/Human-wt/COD/DRC88/2003/G8P[8] DQ005114.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554148.1

RVA/Human-tc/MWI/QEC29/2005/G8P[6] AB749803.1

RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] AY787653.1

RVA/Cow-wt/ZAF/1604/2007/G8P[1] JN831220.1

RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] FJ422131.1

RVA/Human-wt/ZAF/MRC-DPRU9317/1999/G9P[6] JN605437.1

RVA/Human-wt/BGD/MMC6/2005/G2P[4] HQ641355.1

RVA/Human-tc/MWI/QOP387/2007/G8P[4] AB749792.1

RVA/Human-wt/ITA/PA83/2007/G2P[4] KC178767.1

RVA/Human-tc/MWI/QEC29/2005/G8P[6] AB749803.1

RVA/Human-wt/HUN/BP1062/2004/G8P[14] FN665688.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554148.1

RVA/Human-tc/IND/69M/1980/G8P4[10] EF576937.1

RVA/Human-tc/IND/116E3D/1993/G2P[4] AB763957.1

RVA/Human-tc/SWE/1076/1983/G2P2A[6] JX416211.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB749784.1

RVA/Human-wt/MWI/1473/2001/G8P[4] HQ657138.1

RVA/Human-tc/KEN/B10/1987/G3P[2] HM627553.1

RVA/Pig-tc/USA/Gottfried/1983/G4P[6] M32805.1

RVA/Human-tc/GBR/ST3/1975/G4P2A[6] EF583045.1

RVA/Cow-tc/USA/WC3/1981/G6P[5] EF560615.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657171.1

RVA/Human-wt/USA/LB2772/2006/G2P[4] HM467927.1

RVA/Human-wt/Croatia/CR2006/2006/G8P[8] JQ988899.1

RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650124.1

RVA/Human-tc/JPN/AU-1/1982/G3P3[9] DQ490533.1 RVA/Human-tc/USA/Wa/1974/G1P[8] JX406747.1

RVA/Human-wt/ZAF/3133WC/2009/G12P[4] HQ657149.1

RVA/Human-wt/ZAF/3176WC/2009/G12P[6] HQ657160.1

RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] FJ347122.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347100.1

RVA/Horse-tc/GBR/L338/1991/G13P[18] JF712555.1

RVA/Avian-tc/JPN/PO-13/1983/G18P[17] AB009629.2

RVA/Cow-tc/FRA/FR/1982/G6P[1] J04346

RVA/Cow-tc/VEN/BRV003/1990/G6P[1] EF560612.1

VP2

RVA/Human-wt/COD/DRC86/2003/G8P[6] VP2 DQ005124.1

RVA/Human-wt/COD/DRC88/2003/G8P[8] DQ005113.1

RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] AY787652.1

RVA/Human-tc/SWE/1076/1983/G2P2A[6] JX416212.1

RVA/Human-wt/ITA/PA83/2007/2007/G2P[4] KC178777.1

RVA/Human-tc/MWI/QOP387/2007/G8P[4] AB751536.1

RVA/Human-wt/USA/LB2764/2006/G2P[4] HM467932.1

RVA/Human-wt/USA/LB2744/2006/G2P[4] HM467931.1

RVA/Human-wt/GEER/GER1H-09/2009/G8P[4] GQ414541.1

RVA/Human-wt/ZAF/MRC-DPRU9317/1999/G9P[6] JN605438.1

RVA/Human-tc/MWI/QEC29/2005/G8P[6] AB751547.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657172.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB751527.1

RVA/Human-wt/MWI/1473/2001/G8P[4] HQ657139.1

RVA/Human-tc/IND/116E3D/1993/G2P[4] AB763959.1

RVA/Cow-wt/ZAF/1604/2007/G8P[1] JN831221.1

RVA/Human-wt/HUN/BP1062/2004/G8P[14] FN665689.1

RVA/Cow-tc/USA/WC3/1981/G6P[5] EF560616.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554149.1 RVA/Human-tc/IND/69M/1980/G8P4[10] EF583014.1

RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] FJ422132.1

RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] FJ347123.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347100.1

RVA/Horse-tc/GBR/L338/1991/G13P[18] JF712556.1

RVA/Pig-tc/USA/Gottfried/1975/G4P[6] GU199487.1

RVA/Human-wt/CHN/R479/2004/G4P[6] GU189552.1

RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650116.1

RVA/Human-tc/JPN/AU-1/1982/G3P3[9] DQ490536.1

RVA/Human-tc/USA/Wa/1974/G1P[8] JX406748.1

RVA/Human-tc/IND/116E/1988/G9P[11] AY028978.1

RVA/Simian-tc/ZAF/SA11-H96/1958/G3P[2] JF896466

RVA/Cow-tc/VEN/BRV003/1990/G6P[1] EF560613.1

RVA/Cow-tc/FRA/FR/1982/G6P[1] X14057.1

VP3

RVA/Human-wt/COD/DRC88/2003/G8P[8] DQ005112.1

RVA/Human-wt/COD/DRC86/2003/G8P[6] DQ005123.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554150.1

RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] AY787654.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347102.1

RVA/Human-wt/GER/GER1H-09/1999/G8P[4] GQ414542.1

RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] FJ347124.1

RVA/Cow-tc/USA/WC3/1981/G6P[5] EF560617.1

RVA/Human-tc/IND/69M/1980/G8P4[10] EF583015.1

RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] FJ422133.1

RVA/Cow-wt/ZAF/1604/2007/G8P[1] JN831222.1

RVA/Human-tc/MWI/QEC29/2005/G8P[6] AB751573.1

RVA/Human-wt/ZAF/MRC-DPRU9317/1999/G9P[6] JN605439.1

RVA/Human-wt/BGD/MMC6/2005/G2P[4] HQ641357.1 RVA/Human-wt/ITA/PA83/2007/2007/G2P[4] KC178785.1

RVA/Human-wt/USA/LB2744/2006/G2P[4] HM467936.1

RVA/Human-tc/MWI/QOP387/2007/G8P[4] AB751562.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB751554.1

RVA/Human-wt/MWI/1473/2001/G8P[4] HQ657140.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657173.1

RVA/Human-wt/HUN/BP1062/2004/G8P[14] FN665690.1

RVA/Human-tc/SWE/1076/1983/G2P2A[6] JX416213.1

RVA/Horse-tc/GBR/L338/1991/G13P[18] JF712557.1

RVA/Pig-tc/USA/Gottfried/1975/G4P[6] GU199488.1

RVA/Human-wt/HRV/CR2006/2006/G8P[8] JQ988901.1

RVA/Human-tc/GBR/ST3/1975/G4P2A[6] EF583047.1

RVA/Human-wt/ZAF/3133WC/2009/G12P[4] HQ657151.1

RVA/Human-wt/ZAF/3176WC/2009/G12P[6] HQ657162.1

RVA/Avian-tc/DEU/02V0002G3/2002/G19P[30] FJ169855.1

RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650118.1

RVA/Human-tc/JPN/AU-1/1982/G3P3[9] DQ490537.1

RVA/Human-wt/BGD/Dhaka16/2003/G1P[8] DQ492671.1

RVA/Human-tc/USA/Wa/1974/G1P[8] JX406749.1

RVA/Cow-tc/VEN/BRV003/1990/G6P[1] EF560614.1

RVA/Cow-tc/FRA/FR/1982/G6P[1] KF729689.1

RVA/Simian-tc/ZAF/SA11-H96/1958/G3P[2] JQ688675.1

RVA/Human-tc/IND/116E/1988/G9P[11] AY028978.1

VP4

RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] AY787654.1

RVA/Human-tc/IND/116E3D/1993/G2P[4] AB763961.1

RVA/Human-wt/BGD/MMC88/2005/G2P[4] HQ641373.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB749190.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657174.1 RVA/Human-wt/USA/LB2764/2006/G2P[4] HM467943.1

RVA/Human-tc/MWI/QOP387/2007/G8P[4] AB749198.1

RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650119.1

RVA/Human-wt/BGD/MMC6/2005/G2P[4] EU839950.1

RVA/Human-wt/BGD/DH392/2004/G2P[4] EU839949.1

RVA/Human-wt/ITA/PA83/2007/2007/G2P[4] KC178795.1

RVA/Human-wt/DEU/GER1H-09/2009/G8P[4] GQ414543.1

RVA/Human-wt/USA/LB2772/2006/G2P[4] HM467945.1

RVA/Human-wt/ USA /2006 /LB2744/ G2P[4] HM467941.1

RVA/Human-tc/AUS/RV-5/1984/GXP[4] M32559.1

RVA/Human-tc/PHIL/L26/1987/G12P[4] EF672591.1

RVA/Human-xx/KEN/AK26/1982/GXP[4] JF304929.1

RVA/Human-wt/MWI/MW333/2000/G8P[4] AJ278256.1

RVA/Human-wt/KEN/KY6914/2002/G8P[4] FJ386448.1

RVA/Human-tc/USA/Wa/1974/G1P[8] JX406750.2

VP6

DQ005110.1 RVA/Human-wt/COD/DRC88/2003/G8P[8] DQ005121.1 RVA/Human-wt/COD/DRC86/2003/G8P[6] AY787645.1 RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] HQ650121.1 RVA/Human-tc/USA/DS-1/1976/G2P[4] RVA/Human-wt/ITA/PA83/2007/2007/G2P[4] KC178802.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554152.1

RVA/Human-wt/GER/GER1H-09/2009/G8P[4] GQ414544.1

RVA/Human-tc/IND/69M/1980/G8P4[10] EF583016.1

RVA/Cow-wt/ZAF/1604/2007/G8P[1] JN831224.1

RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] FJ347126.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347104.1

RVA/Human-wt/HUN/BP1062/2004/G8P[14] FN665693.1

RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] FJ422136.1 RVA/Human-wt/ZAF/MRC-DPRU9317/1999/G9P[6] JN605441.1

RVA/Human-wt/BGD/RV161/2000/G12P[6] DQ490549.1

RVA/Human-tc/PHL/L26/1987/G12P[4] EF583036.1

RVA/Human-tc/KEN/B10/1987/G3P[2] HM627557.1

RVA/Pig-wt/CAN/CE-M-06-0003/Canada/2006/G2P[27] GU183245.1

RVA/Bat-wt/KEN/KE4852/2007/G25P[6] GU983675.1

RVA/Horse-tc/GBR/L338/1991/G13P[18] JF712559.1

RVA/Human-wt/BGD/N26/2002/G12P[6] DQ146686.1

RVA/Human-wt/BGD/MMC6/2005/G2P[4] HQ641358.1

RVA/Pig-tc/MEX/YM/1983/G11P9[7] X69487

RVA/Rhesus-tc/USA/TUCH/2002/G3P[24] EF583013.1

RVA/Human-tc/MWI/QEC29/2005/G8P[6] AB749357.1

RVA/Human-tc/MWI/QOP387/2007/G8P[4] AB749346.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657175.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB749338.1

RVA/Human-wt/MWI/1473/2001/G8P[4] HQ657142.1

RVA/Human-wt/Croatia/CR2006/2006/G8P[8] JQ988903.1

RVA/Human-wt/ZAF/3133WC/2009/G12P[4] HQ657153.1

RVA/Human-tc/GBR/ST3/1975/G4P2A[6] EF583048.1

RVA/Human-tc/IND/116E/1988/G9P[11] U85998.1

RVA/Avian-tc/DUO/02V0002G32002/G19P[30] FJ169858.1

RVA/Human-tc/JPN/AU-1/1982/G3P3[9] DQ490538.1

RVA/Human-wt/NPL/KTM368/2004/G11P[25] GU199496.1

RVA/Avian-tc/JPN/PO-13/1983/G18P[17] D16329.2

RVA/Human-wt/ECU/Ecu534/2006/G20P[28] EU805774.2

RVA/Human-tc/USA/Wa/1974/G1P[8] JX406752.1

RVA/Human-tc/JPN/YO/1977/G3P1A[8] DQ870500.1

RVA/Pig-tc/USA/Gottfried/1975/G4P[6] D00326.1

RVA/Human-wt/NPL/KTM368/2004/G11P[25] GU199496.1

RVA/Bat-wt/KEN/KE4852/07/2007/G25P[6] GU983675.1 RVA/Cow-tc/VEN/BRV003/1990/G6P[1] AF317126.1

RVA/Cow-tc/FRA/FR/1982/G6P[1] K02254.1

RVA/Cow-tc/USA/WC3/1981/G6P5 AF411322.2

RVA/Human-wt/ZAF/GR10924/1999/G9P[6] FJ183358.1

AU-1 DQ490538.1

NSP1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554154.1

RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] AY787647.1

RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650120.1

RVA/Human-wt/GER/GER1H-09/2009/G8P[4] GQ414546.1

RVA/Human-wt/ZAF/MRC-DPRU9317/1999/G9P[6] JN605443.1

RVA/Human-tc/MWI/QEC29/2005/G8P[6] AB753096.1

RVA/Human-wt/ITA/PA83/2007/2007/G2P[4] KC178723.1

RVA/Human-tc/SWE/1076/1983/G2P2A[6] JX416214.1

RVA/Human-tc/IND/69M/1980/G8P4[10] EF672557.1

RVA/Human-wt/BGD/MMC88/2005/G2P[4] HQ641368.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657166.1

RVA/Human-wt/MWI/1473/2001/G8P[4] HQ657133.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB753077.1

RVA/Human-tc/MWI/QOP387/2007/G8P[4] AB753085.1

RVA/Human-tc/IND/116E/1988/G9P[11] U85999.1

RVA/Human-tc/GBR/ST3/1975/G4P2A[6] EF672613.1

RVA/Human-wt/Croatia/CR2006/2006/G8P[8] JQ988894.1

RVA/Human-wt/ZAF/3176WC/2009/G12P[6] HQ657155.1

RVA/Human-wt/ZAF/GR10924/1999/G9P[6] FJ183357.1

RVA/Cow-tc/VEN/BRV003/1990/G6P[1] EF990703.1

RVA/Human-wt/ZAF/3133WC/2009/G12P[4] HQ657144.1

RVA/Pig-tc/USA/Gottfried/1975/G4P[6] U08431.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347106.1 RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] FJ347128.1

RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] FJ422135.1

RVA/Cow-wt/ZAF/1604/2007/G8P[1] JN831215.1

RVA/Cow-tc/USA/WC3/1981/G6P[5] EF990699.1

RVA/Human-tc/USA/Wa/1974/G1P1A8 L18943.1

NSP2

RVA/Human-wt/COD/DRC88/2003/G8P[8] DQ005107.1

RVA/Human-wt/COD/DRC86/2003/G8P[6] DQ005118.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554155.1

RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] AY787648.1

RVA/Human-wt/GER/GER1H-09/2009/G8P[4] GQ414547.1

RVA/Human-tc/MWI/QEC29/2005/G8P[6] AB753247.1

RVA/Human-wt/ITA/PA83/2007/2007/G2P[4] KC178732.1

RVA/Human-wt/ZAF/MRC-DPRU9317/1999/G9P[6] JN605444.1

RVA/Cow-tc/USA/WC3/1981/G6P[5] EF990700.1

RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] FJ422139.1

RVA/Cow-wt/ZAF/1604/2007/G8P[1] JN831216.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347107.1

RVA/Human-tc/IND/69M/1980/G8P4[10] EF672559.1

RVA/Human-wt/HUN/BP1062/2004/G8P[14] FN665694.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657167.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB753228.1

RVA/Human-wt/MWI/1473/2001/G8P[4] HQ657134.1

RVA/Human-tc/MWI/QOP387/2007/G8P[4] AB753236.1

RVA/Human-tc/SWE/1076/1983/G2P2A[6] JX416215.1

RVA/Human-wt/ITA/PA83/2007/2007/G2P[4] KC178732.1

RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] FJ347129.1

RVA/Human-wt/Croatia/CR2006/2006/G8P[8] JQ988895.1

RVA/Human-tc/GBR/ST3/1975/G4P2A[6] EF672615.1 RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650123.1

RVA/Human-tc/USA/Wa/1974/G1P1A8 L04534

RVA/Human-TC/JPN/AU-1/1982/G3P9 DQ490534

RVA/Bat-wt/KEN/Ke4852/07/2007/G25P[6] GU983677.1

RVA/Human-wt/USA/3176WC/2009/G4P[26] HM467966.1

NSP3

RVA/Human-wt/COD/DRC88/2003/G8P[8] DQ005106.1

RVA/Human-wt/COD/DRC86/2003/G8P[6] DQ005117.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554156.1

RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] AY787649.1

RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650122.1

RVA/Human-wt/ITA/PA83/2007/2007/G2P[4] KC178740.1

RVA/Human-tc/MWI/QEC29/2005/G8P[6] AB753516.1

RVA/Human-wt/GER/GER1H-09/2009/G8P[4] GQ414548.1

RVA/Human-tc/IND/69M/1980/G8P4[10] EF672558.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB753497.1

RVA/Human-wt/MWI/1473/2001/G8P[4] HQ657135.1

RVA/Human-wt/BGD/MMC6/2005/G2P[4] HQ641361.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657168.1

RVA/Human-tc/SWE/1076/1983/G2P2A[6] JX416216.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347108.1

RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] FJ422137.1

RVA/Human-wt/HUN/BP1062/2004/G8P[14] FN665695.1

RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] FJ347130.1

RVA/Cow-wt/ZAF/1604/2007/G8P[1] JN831217.1

RVA/Human-wt/ZAF/3176WC/2009/G12P[6] HQ657157.1

RVA/Human-wt/ZAF/3133WC/2009/G12P[4] HQ657146.1

RVA/Human-wt/Croatia/CR2006/2006/G8P[8] JQ988896.1

RVA/Human-tc/GBR/ST3/1975/G4P2A[6] EF672614.1 NSP4

RVA/Human-wt/COD/DRC88/2003/G8P[8] DQ005105.1

RVA/Human-wt/COD/DRC86/2003/G8P[6] DQ005116.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554157.1

RVA/Human-wt/ITA/PA83/2007/2007G4P[4] KC178749.1

RVA/Human-wt/ZAF/MRC-DPRU9317/1999/G9P[6] JN605446.1

RVA/Human-wt/GER/GER1H-09/2009/G8P[4] GQ414549.1

RVA/Human-wt/CHN/TB-Chen/1996/G2P[4] AY787649.1

RVA/Human-wt/BGD/MMC6/2005/G2P[4] HQ641362.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657169.1

RVA/Human-tc/MWI/MW2-489/2000/G8P[4] AB755566.1

RVA/Human-wt/MWI/1473/2001/G8P[4] HQ657136.1

RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] FJ347131.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347109.1

RVA/Human-wt/ZAF/3133WC/2009/G12P[4] HQ657147.1

RVA/Human-wt/Croatia/CR2006/2006/G8P[8] JQ988897.1

RVA/Human-tc/GBR/ST3/1975/G4P2A[6] EF672617.1

RVA/Human-tc/IND/69M/1980/G8P4[10] EF672561.1

RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] FJ422140.1

RVA/Pig-tc/USA/Gottfried/1975/G4P[6] GU199490.1

RVA/Human-wt/IND/116E/1988/G9P[11] U78558.1

RVA/Human-tc/MWI/OP2-384/2001/G8P[6] AB755578.1

RVA/Human-wt/TUN/2171/2007/G2P[4] JF344778.1

RVA/Human-wt/TUN/2180/2007/G2P[4] JF344780.1

RVA/Human-tc/MWI/QEC289/2006/G8P[8] AB755582.1

RVA/Human-tc/MWI/QEC287/2006/G8P[8] AB755581.1

RVA/Human-wt/USA/LB2772/1974/G2P[4] HM467981.1

RVA/Cow-tc/KOR/KJ44/2004/G5P[1] DQ494397.1

RVA/Pig-tc/USA/OSU/1976/G5P[7] D88831.1 RVA/Horse-tc/GBR/L338/1991/G13P[18] JF712564.1

RVA/Human-wt/BGD/N26/2002/G12P[6] DQ146691.1

RVA/Human-tc/KEN/B10/1987/G3P[2] HM627562.1

RVA/Human-tc/AUS/MG6/1993/G6P[14] EF554102.1

RVA/Pig-tc/THA/CMP034//2000/G2P[27] DQ534017.1

RVA/Vicuna-wt/ARG/C75/2010/G8P[14] JX070055.1

RVA/human-wt/IRQ/IQBE23/2008/G8P[6] JX891393.1

RVA/Human-wt/IRQ/IQBT5/2008/G8P[6] JX891391.1

RVA/human-wt/IRQ/IQBE5/2008/G8P[6] JX891392.1

RVA/Human-wt/BEL/B4106/2000/G3P[14] AY740732.1

RVA/Sheep-wt/TUR/Kutahya/2008/G8P[1] JQ956402.1

RVA/Cow-tc/KOR/KJ75/2005/G5P[5] DQ494398.1

RVA/Human-wt/USA/LB2771/2006/G1P[8] HM467978.1

NSP5

RVA/Human-wt/COD/DRC88/2003/G8P[8] DQ005104.1

RVA/Human-wt/COD/DRC86/2003/G8P[6] DQ005115.1

RVA/Sheep-tc/ESP/OVR762/2002/G8P[14] EF554158.1

RVA/Human-wt CHN/TB-Chen/1996/G2P[4] AY787651.1

RVA/Human-wt/GER/GER1H-09/G8P[4] GQ414550.1

RVA/Human- /ZAF/MRC-DPRU9317/1999/G9P[6] JN605447.1

RVA/Human-wt/ITA/PA83/2007/2007/G2P[4] KC178758.1

RVA/Cow-tc/USA/WC3/1981/G6P[5] EF990702.1

RVA/Human-wt/BGD/MMC6/2005/G2P[4] HQ641363.1

RVA/Human-wt/ZAF/3203WC/2009/G2P[4] HQ657166.1

RVA/Human-wt/MWI/1473/2001/G8P[4] HQ657133.1

RVA/Human-tc/SWE/1076/1983/G2P2A[6] JX416217.1

RVA/Human-tc/IND/69M/1980/G8P4[10] EF672562.1

RVA/Human-tc/IND/116E3D/1993/G2P[4] AB763975.1

RVA/Pig-tc/USA/Gottfried/1975/G4P[6] GU199491.1 RVA/Human-tc/GBR/ST3/1975/G4P2A[6] EF672618.1

RVA/Human-wt/Croatia/CR2006/2006/G8P[8] JQ988898.1

RVA/Human-wt/ZAF/3133WC/2009/G12P[4] HQ657148.1

RVA/Human-wt/ZAF/3176WC/2009/G12P[6] HQ657155.1

RVA/Guanaco-wt/ARG/Rio_Negro/1998/G8P[1] FJ347132.1

RVA/Guanaco-wt/ARG/Chubut/1999/G8P[14] FJ347110.1

RVA/Rhesus-tc/USA/PTRV/1990/G8P[1] FJ422141.1

RVA/Human-tc/MWI/QOP387/2007/G8P[4] AB749173.1

RVA/Human-tc/MWI/OP2-384/2001/G8P[6] AB755605.1

RVA/Human-wt/USA/LB2772/2006/G2P[4] HM467921.1

RVA/Human-tc/MWI/QEC289/2006/G8P[8] AB755609.1

RVA/Human-tc/MWI/QEC287/2006/G8P[8] AB755608.1

RVA/Human-wt /AUS/MON008/2010/G2P4 JX965159.1

RVA/Human-wt/BEL/B1711/2002/G6P[6] NSP5 EF554092.1

RVA/Human-tc/IND/107E1B/1993/G3P[4] AB763974.1

RVA/Human-wt/USA/LB2771/2006/G1P[8] HM467918.1

RVA/Cow-tc/KOR/KJ44/2004/G5P[1] DQ494399.1

RVA/human-wt/IRQ/IQBT5/2008/G8P[6] JX891395.1

RVA/human-wt/IRQ/IQBE23/2008/G8P[6] JX891394.1

RVA/Human-tc/THA/T152/1998/G12P[9] DQ146706.1

RVA/Horse-wt/ARG/E30/1993/G3P[12] JF712576.1

RVA/Human-tc/USA/DS-1/1976/G2P[4] HQ650126.1

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