Supplemental Table 2. ORFs displaying possible internal transcription factor binding.

Systematic Gene Size Bound Factors Evidence name name (amino acids) YBL044W 122 Tec1, Ste12, Sok2 2, 3, 4 YBR162C TOS1 455 Tec1, Ste12 2, 3, 4 YDR169C-A 49 Tec1, Ste12 1 YEL020W-A TIM9 87 Tec1, Ste12, Sok2 check this 2, 5 YEL035C UTR5 166 Sok2 2, 5 YER018C SPC25 221 Sok2 2, 3, 4 YGR035C 116 Sok2 2, 3, 5 YHL006C SHU1 150 Sok2 2, 3, 5 YHL015W-A 27 Tec1, Ste12, Sok2 1 YHL025W SNF6 332 Sok2 2, 3, 4, 5 YHR213W-A 77 Tec1, Ste12, Sok2 check this 1 YJL027C 138 Sok2 2 YLR412C-A 68 Tec1, Ste12 1 YNL015W PB12 75 Sok2 2, 3, 5 YOL019W-A 50 Tec1, Ste12, 1 YOR161C-C 48 Sok2 1 YPL067C 198 Sok2 2, 3

1 Detection of expression 1-3

2 Microarray expression (http://db.yeastgenome.org/cgi-bin/expression/expressionConnection.pl)

3 Yeast Two-Hybrid interactions 4, 5

4 Affinity Precipitation interactions 6, 7

5 Other evidence in SGD (Mutant phenotypes, single gene studies etc)

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