Miseq Release Notes

Decode File Client Software Release Notes Part # XXX Page 1 of 4

Release Notes

This document describes the new features and updates to the new Illumina Decode File Client

Decode File Client v3.0.2

 A new pop-up message capability will allow Illumina Customer Service to remind customers of important and time-sensitive information upon software start up  A new Banner frame now appears at the top of the client where Illumina Customer Service may “push” important messages. These messages are non-locking and are color-coded depending upon their severity (message=green, warning=yellow, alert=red, others=black).

Decode File Client v3.0.1 Apr 6, 2011

 Software now updates the download log file when accessing web-based storage data.  Updated Decode File Client help file.  Change “Instant Access” and “Restricted Access” mode names in Login window to “Access by Beadchip” and “Access by Account”.  Added a configuration value that will allow the max number of times to reattempt connections with the web-based storage.

Decode File Client v2.2.0.0 Jun 14, 2011

 Recompiled v2.1.6.0 in 64-bit (only) and increased the number of threads to 8. These changes were needed to support the new 2.5M and 5M chips. The 32-bit version continues to be v2.1.6.0.

Decode File Client v2.1.6.0 Mar 15, 2010

 Fixed bug where the "Error downloading files: Access to the registry key 'Global' is denied"  Software now writes an additional copy of the log file to the users local folder, which is:  [XP] C:\Documents and Settings\[user_name]\Application Data\Illumina\Illumina Decode File Client\[version]\DmapDownloadLog.txt  [Vista] C:\Users\[user_name]\AppData\Roaming\Illumina\Illumina Decode File Client \[version]\DmapDownloadLog.txt

Decode File Client v2.1.4.0 Feb 10, 2010

 Fixed bug where the "save log" button would only work once. Decode File Client Software Release Notes Part # XXX Page 2 of 4

Decode File Client v2.1.3.0 Jan 29, 2010

 Fixed a memory leak  DMAPs will now be output compressed. The user can toggle back and forth between these modes with…  A) default or  B)  Various bug fixes

Decode File Client v2.1.2.0 Dec 17, 2009

 Various bug fixes

 Added an extra validation step, per beadchip, to check that all the files are on the local directory as expected.  Software now shows which dmap files are missing per chip.  Software shows a summary of chips with missing files after download is completed.  Pop up box now says that download error has occurred (as opposed to “Download Complete”) when files have gone missing.  Fixed input text boxes in normal and instant-access mode, so it’s more flexible using commas, returns, white spaces, and tabs.  Software emails user (if they have signed up for alerts) a summary of which dmap files are missing per chip  Displays a summary of chips with missing after download has completed.  The software will now try by default 5 times instead of 3, to grab files.

 The installer more robustly installs over the of previous installation. Previously, the IlmnDataFiles.dll was not updated.

 In the "instant user mode" all chips are now marked correctly as available or not.  The name of the last user to download is now shown.

 The Verbose key in the config file is set to false, so by default, the ConnectionInfoLog.txt will not be written. Decode File Client Software Release Notes Part # XXX Page 3 of 4

 Greater robustness to different network configurations.  It uses the network domain as opposed to the user login domain to see if the user is internal or external.  It uses the user's default proxy settings if available.  If the DNS strings do not work to reach our server, the application will attempt to use the hard- coded IP address.  A new log file (ConnectionInfoLog.txt) for debugging customer's fire wall problems. This log will only be created if the Verbose key is set in the config file.  Additional fixes were added following testing of 2.0.1:  The zlib.dll was added to the installer  The application was compiled for Vista and XP  The application can go back and re-download files that failed validation.  The application can give up on files that repeatedly fail download.

 Compatibility with Microsoft .Net 3.5 Windows Communication Foundation (WCF) technology.  Software uses multiple threads to download files. Number of threads is configurable (in config file):  User can logon as an instant user by checking the box on the logon screen.  Software uses DNS name to the dispatcher web service instead of IP address: http://us-ca- sddmap.illumina.com. Internal and external addresses are the same.  Modified chip availability: DaysRemaining = PurgeDate - DateTime.Now; PurgeDate comes from Illumina database.

Decode File Client v1.4.0.6 Jan 14, 2009

 Software uses Checksum validation if it available  Software can optionally output V1 (the old, uncompressed dmap type)or V3 (the compressed dmap type) *or* By default, the files are output, uncompressed. Decode File Client Software Release Notes Part # XXX Page 4 of 4

 Addition of instant download mode. This mode allows DMAP download for new customers who do not have a “BillTo” number. Details about the new functionalities in this release are provided in the Help tab on the Client GUI as well as in help.rtf and help2.rtf files.

Decode File Client v1.3.0.0 Aug 20, 2008

 Software works with Vista  Software uses current "Files" libraries

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