Algae 1 Algae Laurencia, a Genus of Red Algae from Hawaii Scientific
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
The Diatoms Big Significance of Tiny Glass Houses
GENERAL ¨ ARTICLE The Diatoms Big Significance of Tiny Glass Houses Aditi Kale and Balasubramanian Karthick Diatoms are unique microscopic algae having intricate cell walls made up of silica. They are the major phytoplankton in aquatic ecosystems and account for 20–25% of the oxygen release and carbon fixation in the world. Their most charac- teristic features are mechanisms they have evolved to utilize silica. Due to their distinctive adaptations and ecology, they (left) Aditi Kale is a PhD student with the are used in various fields like biomonitoring, paleoecology, Biodiversity and nanotechnology and forensics. Paleobiology group of Agharkar Research Introduction Institute. She is studying the biogeography of Diatoms (Class: Bacillariophyceae) are unique microscopic al- freshwater diatoms in gae containing silica and having distinct geometrical shapes. Western Ghats for her They are unicellular, eukaryotic and photosynthetic organisms. thesis. Their cell size ranges between 5 µm–0.5 mm. They occur in wet (right) Balasubramanian or moist places where photosynthesis is possible. Diatoms are Karthick is Scientist with Biodiversity and either planktonic (free-floating) or benthic (attached to a substra- Paleobiology group of tum) in Nature (Figure 1). The individuals are solitary or some- Agharkar Research times form colonies. Diatoms are mostly non-motile; however, Institute. His interests some benthic diatoms have a specialized raphe system1 that include diatom taxonomy and ecology, microbial secretes mucilage to attach or glide along a surface. They are also biogeography,andaquatic known to form biofilms, i. e., layers of tightly attached cells of ecology. microorganisms. Biofilms are formed on a solid surface and are often surrounded by extra-cellular fluids. -
Diatoms Shape the Biogeography of Heterotrophic Prokaryotes in Early Spring in the Southern Ocean
Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean Yan Liu, Pavla Debeljak, Mathieu Rembauville, Stéphane Blain, Ingrid Obernosterer To cite this version: Yan Liu, Pavla Debeljak, Mathieu Rembauville, Stéphane Blain, Ingrid Obernosterer. Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2019, 21 (4), pp.1452-1465. 10.1111/1462-2920.14579. hal-02383818 HAL Id: hal-02383818 https://hal.archives-ouvertes.fr/hal-02383818 Submitted on 28 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean 5 Yan Liu1, Pavla Debeljak1,2, Mathieu Rembauville1, Stéphane Blain1, Ingrid Obernosterer1* 1 Sorbonne Université, CNRS, Laboratoire d'Océanographie Microbienne, LOMIC, F-66650 10 Banyuls-sur-Mer, France 2 Department of Limnology and Bio-Oceanography, University of Vienna, A-1090 Vienna, Austria -
Exploring Bacteria Diatom Associations Using Single-Cell
Vol. 72: 73–88, 2014 AQUATIC MICROBIAL ECOLOGY Published online April 4 doi: 10.3354/ame01686 Aquat Microb Ecol FREEREE ACCESSCCESS Exploring bacteria–diatom associations using single-cell whole genome amplification Lydia J. Baker*, Paul F. Kemp Department of Oceanography, University of Hawai’i at Manoa, 1950 East West Road, Center for Microbial Oceanography: Research and Education (C-MORE), Honolulu, Hawai’i 96822, USA ABSTRACT: Diatoms are responsible for a large fraction of oceanic and freshwater biomass pro- duction and are critically important for sequestration of carbon to the deep ocean. As with most surfaces present in aquatic systems, bacteria colonize the exterior of diatom cells, and they inter- act with the diatom and each other. The ecology of diatoms may be better explained by conceptu- alizing them as composite organisms consisting of the host cell and its bacterial associates. Such associations could have collective properties that are not predictable from the properties of the host cell alone. Past studies of these associations have employed culture-based, whole-population methods. In contrast, we examined the composition and variability of bacterial assemblages attached to individual diatoms. Samples were collected in an oligotrophic system (Station ALOHA, 22° 45’ N, 158° 00’ W) at the deep chlorophyll maximum. Forty eukaryotic host cells were isolated by flow cytometry followed by multiple displacement amplification, including 26 Thalassiosira spp., other diatoms, dinoflagellates, coccolithophorids, and flagellates. Bacteria were identified by amplifying, cloning, and sequencing 16S rDNA using primers that select against chloroplast 16S rDNA. Bacterial sequences were recovered from 32 of 40 host cells, and from parallel samples of the free-living and particle-associated bacteria. -
Divergence Time Estimates and the Evolution of Major Lineages in The
www.nature.com/scientificreports OPEN Divergence time estimates and the evolution of major lineages in the florideophyte red algae Received: 31 March 2015 Eun Chan Yang1,2, Sung Min Boo3, Debashish Bhattacharya4, Gary W. Saunders5, Accepted: 19 January 2016 Andrew H. Knoll6, Suzanne Fredericq7, Louis Graf8 & Hwan Su Yoon8 Published: 19 February 2016 The Florideophyceae is the most abundant and taxonomically diverse class of red algae (Rhodophyta). However, many aspects of the systematics and divergence times of the group remain unresolved. Using a seven-gene concatenated dataset (nuclear EF2, LSU and SSU rRNAs, mitochondrial cox1, and plastid rbcL, psaA and psbA genes), we generated a robust phylogeny of red algae to provide an evolutionary timeline for florideophyte diversification. Our relaxed molecular clock analysis suggests that the Florideophyceae diverged approximately 943 (817–1,049) million years ago (Ma). The major divergences in this class involved the emergence of Hildenbrandiophycidae [ca. 781 (681–879) Ma], Nemaliophycidae [ca. 661 (597–736) Ma], Corallinophycidae [ca. 579 (543–617) Ma], and the split of Ahnfeltiophycidae and Rhodymeniophycidae [ca. 508 (442–580) Ma]. Within these clades, extant diversity reflects largely Phanerozoic diversification. Divergences within Florideophyceae were accompanied by evolutionary changes in the carposporophyte stage, leading to a successful strategy for maximizing spore production from each fertilization event. Our research provides robust estimates for the divergence times of major lineages within the Florideophyceae. This timeline was used to interpret the emergence of key morphological innovations that characterize these multicellular red algae. The Florideophyceae is the most taxon-rich red algal class, comprising 95% (6,752) of currently described species of Rhodophyta1 and possibly containing many more cryptic taxa2. -
Bülent's High Energy Reef
FOURTH QUARTER 2016 I VOLUME 10 Plectranthias pelicieri: ONE ASTONISHING PERCHLET BÜLENT’S HIGH ENERGY REEF BOXING SHRIMPS in the ring! Reef Hobbyist Magazine 1 FOURTH QUARTER 2016 | Volume 10 FEATURES Copyright © 2016 Reef Hobbyist Magazine. All rights reserved. ANNOUNCEMENTS KEEPING LPS HAPPY • Care to share your breeding or husbandry success with the world? We are Debora Długopolska lives in Poland always looking for interesting articles to share with our readers. Email us your 6 and has been keeping reefs for ideas through the "Contact Us" tab on our website. 4 years. During that time, she has refined her • Hard copy subscriptions are available to hobbyists in the United States! Scan the methodology with LPS and explains the approach that QR code below or visit us at www.reefhobbyistmagazine.com to subscribe. has brought her success and led to this beautiful tank. RHM-SPONSORED EVENTS PLECTRANTHIAS PELICIERI: ONE (our latest issues are available at these sponsored events) 12 ASTONISHING PERCHLET • Red River Reef & Reptile Expo: October 1, Fargo, ND Mindy van Leur has been a reefkeeper since the redriverreefandreptileexpo.com early 90s with an affinity for SPS corals and helping • Mid-Atlantic Marine Aquarium Expo: October 8, Chesapeake, VA new hobbyists. Mindy is understandably enchanted midatlanticmas.org/mamax-2016/ with her Pelicier’s Perchlet and shares its charms • Ladies Frag Swapping Bi-annual Frag Party: October 8, Sturgis, MI with our readers. • Reeftoberfest: October 15, Las Vegas, NV reefsoflasvegas.com/events NOT ANOTHER BRINE • Aquatic Experience: November 4-6, Chicago, IL SHRIMP ARTICLE aquaticexperience.org 18 Jason Oneppo is a 25-year veteran • Lonestar Marine Aquarist Rally: November 6, San Antonio, TX in the aquarium industry and has been doing R&D maast.org/lmar for San Francisco Bay Brand for more than a • Reef-A-Palooza: November 19-20, Costa Mesa, CA decade. -
The Genus Laurencia (Rhodomelaceae, Rhodophyta) in the Canary Islands
Courier Forsch.-Inst. Senckenberg, 159: 113-117 Frankfurt a.M., 01.07.1993 The Genus Laurencia (Rhodomelaceae, Rhodophyta) in the Canary Islands M. CANDELARIA GIL-RODRIGUEZ & RICARDO HAROUN I Figure The genus Laurencia LAMOUROUX is a group of In the Atlantic Coasts, SAITO (1982) made a short medium-sized, erect, fleshy or cartilaginous, red al review of three typical European species: L. obtusa gae distributed from temperate to tropical waters. (HUDSON) LAMOUROUX, L. pinnatifida (HUDSON) LA During the last few years several collections along MOUROUX and L. hybrida (De.) LENORMAND. Other the coasts of the Canary Islands have shown the im researches carried out in this troublesome genus in portant role of the Laurencia species in the intertidal the Atlantic Ocean were made by TAYLOR (1960) in communities; however, it is rather problematic to Eastern Tropical and Subtropical Coasts of America, identify many of the taxa observed, and it seems 0LIVEIRA-FILHO {1969) in Brazil, MAGNE (1980) in necessary to make a biosystematic review of this ge the French Atlantic Coasts, LAWSON & JoHN (1982) nus in the Macaronesian Region. in the West Coast of Africa, RODRIGUEZ DE Rros LAMouRoux in 1813 established the genus with 8 (1981), RODRIGUEZ DE RIOS & SAITO (1982, 1985) and species, but he didn't mention a type species. Critical RODRIGUEZ DE RIOS & LOBO {1984) in Venezuela. systematic studies have been made by several authors, C. AGARDH (1823, 1824), J.AGARDH {1842, 1851, 1880), DE TONI {1903, 1924), YAMADA {1931), after reviewing many type specimens -
Marine Plankton Diatoms of the West Coast of North America
MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. CUPP UNIVERSITY OF CALIFORNIA PRESS BERKELEY AND LOS ANGELES 1943 BULLETIN OF THE SCRIPPS INSTITUTION OF OCEANOGRAPHY OF THE UNIVERSITY OF CALIFORNIA LA JOLLA, CALIFORNIA EDITORS: H. U. SVERDRUP, R. H. FLEMING, L. H. MILLER, C. E. ZoBELL Volume 5, No.1, pp. 1-238, plates 1-5, 168 text figures Submitted by editors December 26,1940 Issued March 13, 1943 Price, $2.50 UNIVERSITY OF CALIFORNIA PRESS BERKELEY, CALIFORNIA _____________ CAMBRIDGE UNIVERSITY PRESS LONDON, ENGLAND [CONTRIBUTION FROM THE SCRIPPS INSTITUTION OF OCEANOGRAPHY, NEW SERIES, No. 190] PRINTED IN THE UNITED STATES OF AMERICA Taxonomy and taxonomic names change over time. The names and taxonomic scheme used in this work have not been updated from the original date of publication. The published literature on marine diatoms should be consulted to ensure the use of current and correct taxonomic names of diatoms. CONTENTS PAGE Introduction 1 General Discussion 2 Characteristics of Diatoms and Their Relationship to Other Classes of Algae 2 Structure of Diatoms 3 Frustule 3 Protoplast 13 Biology of Diatoms 16 Reproduction 16 Colony Formation and the Secretion of Mucus 20 Movement of Diatoms 20 Adaptations for Flotation 22 Occurrence and Distribution of Diatoms in the Ocean 22 Associations of Diatoms with Other Organisms 24 Physiology of Diatoms 26 Nutrition 26 Environmental Factors Limiting Phytoplankton Production and Populations 27 Importance of Diatoms as a Source of food in the Sea 29 Collection and Preparation of Diatoms for Examination 29 Preparation for Examination 30 Methods of Illustration 33 Classification 33 Key 34 Centricae 39 Pennatae 172 Literature Cited 209 Plates 223 Index to Genera and Species 235 MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. -
Distribution of Epiphytic Macroalgae on the Thalli of Their Hosts in Cuba
Acta Botanica Brasilica 27(4): 815-826. 2013. Distribution of epiphytic macroalgae on the thalli of their hosts in Cuba Yander Luis Diez García1, Abdiel Jover Capote2,6, Ana María Suárez Alfonso3, Liliana María Gómez Luna4 and Mutue Toyota Fujii5 Received: 4 April, 2012. Accepted: 14 October, 2013 ABSTRACT We investigated the distribution of epiphytic macroalgae on the thalli of their hosts at eight localities along the sou- theastern coast of Cuba between June 2010 and March 2011. We divided he epiphytes in two groups according to their distribution on the host: those at the base of the thallus and those on its surface. We determining the dissimilarity between the zones and the species involved. We identified 102 taxa of epiphytic macroalgae. There were significant differences between the two zones. In 31 hosts, the number of epiphytes was higher on the surface of the thallus, whereas the number of epiphytes was higher at the thallus base in 25 hosts, and the epiphytes were equally distributed between the two zones in five hosts (R=−0.001, p=0.398). The mean dissimilarity between the two zones, in terms of the species composition of the epiphytic macroalgae, was 96.64%. Hydrolithon farinosum and Polysiphonia atlantica accounted for 43.76% of the dissimilarity. Among macroalgae, the structure of the thallus seems to be a determinant of their viability as hosts for epiphytes. Key words: Chlorophyta, epiphytism, distribution, Phaeophyceae, Rhodophyta Introduction scales is a potentially productive approach. It is important to understand the patterns of abundance of all sympatric The structure of intertidal marine communities is deter- epiphytic species along the various gradients, because in- mined by a combination of physical factors and biotic interac- terspecific relationships could represent one of the factors tions (Little & Kitching 1996; Wernberg & Connell 2008). -
The Genus "Laurencia (Rhodomelaceae
- Courier Forsch.-Inst. Senckenberg, 159: 113- 117 - Frankfurt a.M., 0 1.07.1993 The Genus Laurencia (Rhodomelaceae, Rhodophyta) in the Canary Islands I Figure Tha riamiir 1 ~i..-ni.-:~ 1 i.inwinnrtv :e a mrnian nr iii~~GUUJ uuursi~,iu knmvunvun a= a fiiuup vk Ir! !he A!!ari.!ic Cous, STUTC(!W) ?i?ade a short medium-sized, erect, fleshy or cartilaginous, red al- review of three typical European species: L. obtusa gae distributed from temperate to tropical waters. (HUDSON)LAMOUROUX, L. pinnatifida (HUDSON)LA- During the last few years severa1 collections along MoURoUX and L. hybrida (Dc.) LENORMAND.Other the coasts of the Canary Islands have shown the im- researches carried out in this troublesome genus in portant role of the Laurencia species in the intertidal the Atlantic Ocean were made by TAYLOR(1960) in communities; however, it is rather problematic to Eastern Tropical and Subtropical Coasts of America, identify rnany of the taxa observed, and it seems OLIVEIRA-FILHO(1 969) jn Brazil, MACNE(1 980) in necessary to make a biosystematic review of this ge- the French Atlantic Coasts, LAWSON& JOHN(1982) nus in the Macaronesian Region. in the West Coast of Africa, RODRICUEZDE RIOS LAMOUROUXin 1813 established the genus with 8 (1981), RODRIGUEZDERroS & SNTO (1982, 1985) and species, but he didn't mention a type species. Critica1 RODRIGUEZDE RIOS& LOBO(1984) in Venezuela. systematic studies have been made by several authors, C. ACAIU)H(1823, 1824), J.AGARDH(1842, 1851, 1880), DE TON1 (1903, 1924). YMADA(1931). after reviewing many type specimens from different American and European Herbaria. -
Ceramiales, Rhodophyta) from the Southwestern Atlantic Ocean
Phytotaxa 100 (1): 41–56 (2013) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2013 Magnolia Press ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.100.1.5 Osmundea sanctarum sp. nov. (Ceramiales, Rhodophyta) from the southwestern Atlantic Ocean RENATO ROCHA-JORGE1,6, VALÉRIA CASSANO2, MARIA BEATRIZ BARROS-BARRETO3, JHOANA DÍAZ-LARREA4, ABEL SENTÍES4, MARIA CANDELARIA GIL-RODRÍGUEZ5 & MUTUE TOYOTA FUJII6,7 1Post-Graduate Program “Biodiversidade Vegetal e Meio Ambiente”, Instituto de Botânica, Av. Miguel Estéfano, 3687, 04301-902 São Paulo, SP, Brazil. 2 Departamento de Botânica, Universidade de São Paulo, Rua do Matão 277, 05508-900 São Paulo, SP, Brazil. 3Departamento de Botânica, Universidade Federal do Rio de Janeiro, Av. Prof. Rodolpho Rocco 211, CCS, bloco A, subsolo, sala 99, 21941-902 Rio de Janeiro, RJ, Brazil. 4Departamento de Hidrobiología, Universidad Autónoma Metropolitana-Iztapalapa, A.P. 55-535, 09340 Mexico, D.F. 5Departamento de Biología Vegetal (Botánica), Universidad de La Laguna, 38071. La Laguna, Tenerife, Islas Canarias, Spain. 6Núcleo de Pesquisa em Ficologia, Instituto de Botânica, Av. Miguel Estéfano, 3687, 04301-902 São Paulo, SP, Brazil. 7Author for correspondence. E-mail: [email protected] Abstract An ongoing phycological survey in the Laje de Santos Marine State Park (LSMSP) of São Paulo in southeastern Brazil revealed a previously undescribed species of Osmundea (Rhodophyta, Rhodomelaceae), which was found in the subtidal zone at a depth of 7 to 20 m. Morphological studies conducted on Osmundea specimens collected in the LSMSP revealed characteristics typical of the genus Osmundea, including two pericentral cells per each axial segment and tetrasporangia cut off randomly from cortical cells. -
Molecular Phylogenies Support Taxonomic Revision of Three Species of Laurencia (Rhodomelaceae, Rhodophyta), with the Description of a New Genus
European Journal of Taxonomy 269: 1–19 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2017.269 www.europeanjournaloftaxonomy.eu 2017 · Rousseau F. et al. This work is licensed under a Creative Commons Attribution 3.0 License. DNA Library of Life, research article Molecular phylogenies support taxonomic revision of three species of Laurencia (Rhodomelaceae, Rhodophyta), with the description of a new genus Florence ROUSSEAU 1,*, Delphine GEY 2, Akira KURIHARA 3, Christine A. MAGGS 4, Julie MARTIN-LESCANNE 5, Claude PAYRI 6, Bruno de REVIERS 7, Alison R. SHERWOOD 8 & Line LE GALL 9 1,7,9 Institut de Systématique, Evolution, Biodiversité (ISyEB), UMR 7205 CNRS, EPHE, MNHN, UPMC, Sorbonne Universités, Equipe Exploration, Espèces, Evolution, Muséum National d’Histoire Naturelle, case postale N° 39, 57 rue Cuvier, 75231 Cedex 05 Paris, France 2,5 Outils et Méthodes de la Systématique Intégrative, UMS 2700 MNHN, CNRS, Service de Systématique Moléculaire, Muséum National d’Histoire Naturelle, case postale N° 26, 57 rue Cuvier, 75231 Cedex 05 Paris, France 3,8 Department of Botany, 3190 Maile Way, University of Hawaii, Honolulu, Hawaii, 96822 U.S.A. 4 Faculty of Science and Technology, Bournemouth University, Poole House, Talbot Campus, Poole, Dorset BH12 5BB, U.K. 6 Institut de Recherche pour le Développement (IRD), UMR ENTROPIE-IRD, UR, CNRS, BP A5, 98848 Noumea cedex, Noumea, New Caledonia * Corresponding author E-mail: [email protected] 2 Email: [email protected] 3,8 Email: [email protected] 4 Email: [email protected] 5 Email: [email protected] 6 Email: [email protected] 7 Email: [email protected] 9 Email: [email protected] Abstract.