Angiotensin-I-Converting Enzyme (ACE), ACE2 and Renin
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NIH Public Access Author Manuscript Biochemistry
NIH Public Access Author Manuscript Biochemistry. Author manuscript; available in PMC 2010 June 23. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Biochemistry. 2009 June 23; 48(24): 5731±5737. doi:10.1021/bi9003099. Neisseria gonorrhoeae Penicillin-Binding Protein 3 Demonstrates a Pronounced Preference for Nε-Acylated Substrates† Sridhar Peddi‡,§, Robert A. Nicholas∥, and William G. Gutheil‡,* ‡Division of Pharmaceutical Sciences, University of Missouri-Kansas City, 5005 Rockhill Road, Kansas City, Missouri 64110. ∥Department of Pharmacology, CB#7365, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-7365. Abstract Penicillin-binding proteins (PBPs) are bacterial enzymes involved in the final stages of cell wall biosynthesis, and are the lethal targets of β-lactam antibiotics. Despite their importance, their roles in cell wall biosynthesis remain enigmatic. A series of eight substrates, based on variation of the pentapeptide Boc-L-Ala-γ-D-Glu-L-Lys-D-Ala-D-Ala, were synthesized to test specificity for three features of PBP substrates: 1) the presence or absence of an Nε-acyl group, 2) the presence of D- IsoGln in place of γ-D-Glu, and 3) the presence or absence of the N-terminal L-Ala residue. The capacity of these peptides to serve as substrates for Neisseria gonorrhoeae (NG) PBP3 was assessed. NG PBP3 demonstrated good catalytic efficiency (2.5 × 105 M−1sec−1) with the best of these substrates, with a pronounced preference (50-fold) for Nε-acylated substrates over Nε-nonacylated substrates. This observation suggests that NG PBP3 is specific for the ∼D-Ala-D-Ala moiety of pentapeptides engaged in cross-links in the bacterial cell wall, such that NG PBP3 would act after transpeptidase-catalyzed reactions generate the acylated amino group required for its specificity. -
Molecular Markers of Serine Protease Evolution
The EMBO Journal Vol. 20 No. 12 pp. 3036±3045, 2001 Molecular markers of serine protease evolution Maxwell M.Krem and Enrico Di Cera1 ment and specialization of the catalytic architecture should correspond to signi®cant evolutionary transitions in the Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, Box 8231, St Louis, history of protease clans. Evolutionary markers encoun- MO 63110-1093, USA tered in the sequences contributing to the catalytic apparatus would thus give an account of the history of 1Corresponding author e-mail: [email protected] an enzyme family or clan and provide for comparative analysis with other families and clans. Therefore, the use The evolutionary history of serine proteases can be of sequence markers associated with active site structure accounted for by highly conserved amino acids that generates a model for protease evolution with broad form crucial structural and chemical elements of applicability and potential for extension to other classes of the catalytic apparatus. These residues display non- enzymes. random dichotomies in either amino acid choice or The ®rst report of a sequence marker associated with serine codon usage and serve as discrete markers for active site chemistry was the observation that both AGY tracking changes in the active site environment and and TCN codons were used to encode active site serines in supporting structures. These markers categorize a variety of enzyme families (Brenner, 1988). Since serine proteases of the chymotrypsin-like, subtilisin- AGY®TCN interconversion is an uncommon event, it like and a/b-hydrolase fold clans according to phylo- was reasoned that enzymes within the same family genetic lineages, and indicate the relative ages and utilizing different active site codons belonged to different order of appearance of those lineages. -
ACE2–Angiotensin-(1–7)–Mas Axis and Oxidative Stress in Cardiovascular Disease
Hypertension Research (2011) 34, 154–160 & 2011 The Japanese Society of Hypertension All rights reserved 0916-9636/11 $32.00 www.nature.com/hr REVIEW SERIES ACE2–angiotensin-(1–7)–Mas axis and oxidative stress in cardiovascular disease Luiza A Rabelo1,2, Natalia Alenina1 and Michael Bader1 The renin–angiotensin–aldosterone system (RAAS) is a pivotal regulator of physiological homeostasis and diseases of the cardiovascular system. Recently, new factors have been discovered, such as angiotensin-converting enzyme 2 (ACE2), angiotensin-(1–7) and Mas. This newly defined ACE2–angiotensin-(1–7)–Mas axis was shown to have a critical role in the vasculature and in the heart, exerting mainly protective effects. One important mechanism of the classic and the new RAAS regulate vascular function is through the regulation of redox signaling. Angiotensin II is a classic prooxidant peptide that increases superoxide production through the activation of NAD(P)H oxidases. This review summarizes the current knowledge about the ACE2–angiotensin-(1–7)–Mas axis and redox signaling in the context of cardiovascular regulation and disease. By interacting with its receptor Mas, angiotensin-(1–7) induces the release of nitric oxide from endothelial cells and thereby counteracts the effects of angiotensin II. ACE2 converts angiotensin II to angiotensin-(1–7) and, thus, is a pivotal regulator of the local effects of the RAAS on the vessel wall. Taken together, the ACE2–angiotensin-(1–7)–Mas axis emerges as a novel therapeutic target in the context of cardiovascular -
Serine Proteases with Altered Sensitivity to Activity-Modulating
(19) & (11) EP 2 045 321 A2 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 08.04.2009 Bulletin 2009/15 C12N 9/00 (2006.01) C12N 15/00 (2006.01) C12Q 1/37 (2006.01) (21) Application number: 09150549.5 (22) Date of filing: 26.05.2006 (84) Designated Contracting States: • Haupts, Ulrich AT BE BG CH CY CZ DE DK EE ES FI FR GB GR 51519 Odenthal (DE) HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI • Coco, Wayne SK TR 50737 Köln (DE) •Tebbe, Jan (30) Priority: 27.05.2005 EP 05104543 50733 Köln (DE) • Votsmeier, Christian (62) Document number(s) of the earlier application(s) in 50259 Pulheim (DE) accordance with Art. 76 EPC: • Scheidig, Andreas 06763303.2 / 1 883 696 50823 Köln (DE) (71) Applicant: Direvo Biotech AG (74) Representative: von Kreisler Selting Werner 50829 Köln (DE) Patentanwälte P.O. Box 10 22 41 (72) Inventors: 50462 Köln (DE) • Koltermann, André 82057 Icking (DE) Remarks: • Kettling, Ulrich This application was filed on 14-01-2009 as a 81477 München (DE) divisional application to the application mentioned under INID code 62. (54) Serine proteases with altered sensitivity to activity-modulating substances (57) The present invention provides variants of ser- screening of the library in the presence of one or several ine proteases of the S1 class with altered sensitivity to activity-modulating substances, selection of variants with one or more activity-modulating substances. A method altered sensitivity to one or several activity-modulating for the generation of such proteases is disclosed, com- substances and isolation of those polynucleotide se- prising the provision of a protease library encoding poly- quences that encode for the selected variants. -
Structure and Function of a Serine Carboxypeptidase Adapted for Degradation of the Protein Synthesis Antibiotic Microcin C7
Structure and function of a serine carboxypeptidase adapted for degradation of the protein synthesis antibiotic microcin C7 Vinayak Agarwala,b, Anton Tikhonovc,d, Anastasia Metlitskayac, Konstantin Severinovc,d,e, and Satish K. Naira,b,f,1 aCenter for Biophysics and Computational Biology, bInstitute for Genomic Biology, and fDepartment of Biochemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL 61801; cInstitutes of Molecular Genetics and Gene Biology, Russian Academy of Sciences, Moscow 11934, Russia; eDepartment of Molecular Biology and Biochemistry, and dWaksman Institute, Rutgers, State University of New Jersey, Piscataway, NJ 08854 Edited by Perry Allen Frey, University of Wisconsin, Madison, WI, and approved January 20, 2012 (received for review August 30, 2011) Several classes of naturally occurring antimicrobials exert their activity is exerted after intracellular processing. Examples of antibiotic activity by specifically targeting aminoacyl-tRNA synthe- naturally occurring antibiotics that employ this Trojan horse strat- tases, validating these enzymes as drug targets. The aspartyl tRNA egy include the LeuRS inhibitor agrocin 84 (in which the toxic synthetase “Trojan horse” inhibitor microcin C7 (McC7) consists of a group is linked through a phosphoramidate bond to a D-glucofur- nonhydrolyzable aspartyl-adenylate conjugated to a hexapeptide anosyloxyphosphoryl moiety) (5), the SerRS inhibitor albomycin carrier that facilitates active import into bacterial cells through an (a toxic group covalently linked to a hydroxymate siderophore) oligopeptide transport system. Subsequent proteolytic processing (6), and the AspRS inhibitor microcin C7 (Fig. 1A, 1) (McC7; releases the toxic compound inside the cell. Producing strains consisting of a modified aspartyl-adenylate linked to a six-residue of McC7 must protect themselves against autotoxicity that may re- peptide carrier). -
A Newly Characterized Vacuolar Serine Carboxypeptidase, Atg42/Ybr139w
M BoC | ARTICLE A newly characterized vacuolar serine carboxypeptidase, Atg42/Ybr139w, is required for normal vacuole function and the terminal steps of autophagy in the yeast Saccharomyces cerevisiae Katherine R. Parzycha, Aileen Ariosaa, Muriel Marib, and Daniel J. Klionskya,* aLife Sciences Institute and Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI 48109; bDepartment of Cell Biology, University Medical Center Groningen, 9713AV Groningen, The Netherlands ABSTRACT Macroautophagy (hereafter autophagy) is a cellular recycling pathway essential Monitoring Editor for cell survival during nutrient deprivation that culminates in the degradation of cargo with- Benjamin S. Glick in the vacuole in yeast and the lysosome in mammals, followed by efflux of the resultant University of Chicago macromolecules back into the cytosol. The yeast vacuole is home to many different hydro- Received: Aug 16, 2017 lytic proteins and while few have established roles in autophagy, the involvement of others Revised: Feb 27, 2018 remains unclear. The vacuolar serine carboxypeptidase Y (Prc1) has not been previously Accepted: Mar 1, 2018 shown to have a role in vacuolar zymogen activation and has not been directly implicated in the terminal degradation steps of autophagy. Through a combination of molecular genetic, cell biological, and biochemical approaches, we have shown that Prc1 has a functional homologue, Ybr139w, and that cells deficient in both Prc1 and Ybr139w have defects in au- tophagy-dependent protein synthesis, vacuolar zymogen activation, and autophagic body breakdown. Thus, we have demonstrated that Ybr139w and Prc1 have important roles in proteolytic processing in the vacuole and the terminal steps of autophagy. INTRODUCTION The vacuole in the yeast Saccharomyces cerevisiae is analogous to Klionsky, 2013). -
New Components of the Renin-Angiotensin System: Alamandine and the Mas-Related G Protein-Coupled Receptor D
Curr Hypertens Rep (2014) 16:433 DOI 10.1007/s11906-014-0433-0 HYPERTENSION AND THE KIDNEY (R CAREY, SECTION EDITOR) New Components of the Renin-Angiotensin System: Alamandine and the Mas-Related G Protein-Coupled Receptor D Gisele Maia Etelvino & Antônio Augusto Bastos Peluso & Robson Augusto Souza Santos Published online: 24 April 2014 # Springer Science+Business Media New York 2014 Abstract The renin-angiotensin system is an important com- this novel component of the RAS opens new venues for ponent of the central and humoral mechanisms of blood understanding its physiological role and opens new putative pressure and hydro-electrolytic balance control. Angiotensin therapeutic possibilities for treating cardiovascular diseases. II is a key player of this system. Twenty-five years ago the first manuscripts describing the formation and actions of another Keywords Mas1 . Angiotensin II . Angiotensin-(1-7) . peptide of the RAS, angiotensin-(1-7), were published. Since Hypertension . Angiotensin-(1-12) . Angiotensin A then several publications have shown that angiotensin-(1-7) is as pleiotropic as angiotensin II, influencing the functions of many organs and systems. The identification of the ACE Introduction homologue ACE2 and, a few years later, Mas, as a receptor for angiotensin-(1-7) contributed a great deal to establish this The renin angiotensin system (RAS) has been described as an peptide as a key player of the RAS. Most of the actions of endocrine and tissular system involved in cardiovascular and angiotensin-(1-7) are opposite to those described for angio- renal control. Classically, it is comprised by angiotensinogen, tensin II. This has led to the concept of two arms of the RAS: an α-2-globulin produced mainly by the liver, which is one comprising ACE/AngII/AT1R and the other cleaved in the amino-terminal portion by renin, an aspartyl ACE2/Ang-(1-7)/Mas. -
Proteolytic Cleavage—Mechanisms, Function
Review Cite This: Chem. Rev. 2018, 118, 1137−1168 pubs.acs.org/CR Proteolytic CleavageMechanisms, Function, and “Omic” Approaches for a Near-Ubiquitous Posttranslational Modification Theo Klein,†,⊥ Ulrich Eckhard,†,§ Antoine Dufour,†,¶ Nestor Solis,† and Christopher M. Overall*,†,‡ † ‡ Life Sciences Institute, Department of Oral Biological and Medical Sciences, and Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada ABSTRACT: Proteases enzymatically hydrolyze peptide bonds in substrate proteins, resulting in a widespread, irreversible posttranslational modification of the protein’s structure and biological function. Often regarded as a mere degradative mechanism in destruction of proteins or turnover in maintaining physiological homeostasis, recent research in the field of degradomics has led to the recognition of two main yet unexpected concepts. First, that targeted, limited proteolytic cleavage events by a wide repertoire of proteases are pivotal regulators of most, if not all, physiological and pathological processes. Second, an unexpected in vivo abundance of stable cleaved proteins revealed pervasive, functionally relevant protein processing in normal and diseased tissuefrom 40 to 70% of proteins also occur in vivo as distinct stable proteoforms with undocumented N- or C- termini, meaning these proteoforms are stable functional cleavage products, most with unknown functional implications. In this Review, we discuss the structural biology aspects and mechanisms -
Intrinsic Evolutionary Constraints on Protease Structure, Enzyme
Intrinsic evolutionary constraints on protease PNAS PLUS structure, enzyme acylation, and the identity of the catalytic triad Andrew R. Buller and Craig A. Townsend1 Departments of Biophysics and Chemistry, The Johns Hopkins University, Baltimore MD 21218 Edited by David Baker, University of Washington, Seattle, WA, and approved January 11, 2013 (received for review December 6, 2012) The study of proteolysis lies at the heart of our understanding of enzyme evolution remain unanswered. Because evolution oper- biocatalysis, enzyme evolution, and drug development. To un- ates through random forces, rationalizing why a particular out- derstand the degree of natural variation in protease active sites, come occurs is a difficult challenge. For example, the hydroxyl we systematically evaluated simple active site features from all nucleophile of a Ser protease was swapped for the thiol of Cys at serine, cysteine and threonine proteases of independent lineage. least twice in evolutionary history (9). However, there is not This convergent evolutionary analysis revealed several interre- a single example of Thr naturally substituting for Ser in the lated and previously unrecognized relationships. The reactive protease catalytic triad, despite its greater chemical similarity rotamer of the nucleophile determines which neighboring amide (9). Instead, the Thr proteases generate their N-terminal nu- can be used in the local oxyanion hole. Each rotamer–oxyanion cleophile through a posttranslational modification: cis-autopro- hole combination limits the location of the moiety facilitating pro- teolysis (10, 11). These facts constitute clear evidence that there ton transfer and, combined together, fixes the stereochemistry of is a strong selective pressure against Thr in the catalytic triad that catalysis. -
Substrate Specificity and Structural Modeling of Human
International Journal of Molecular Sciences Article Substrate Specificity and Structural Modeling of Human Carboxypeptidase Z: A Unique Protease with a Frizzled-Like Domain Javier Garcia-Pardo 1 , Sebastian Tanco 1,2 , Maria C. Garcia-Guerrero 1, Sayani Dasgupta 3, Francesc Xavier Avilés 1 , Julia Lorenzo 1,* and Lloyd D. Fricker 3,* 1 Institut de Biotecnologia i Biomedicina and Departament de Bioquimica i Biologia Molecular, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain; [email protected] (J.G.-P.); [email protected] (S.T.); [email protected] (M.C.G.-G.); [email protected] (F.X.A.) 2 BiosenSource BV, B-1800 Vilvoorde, Belgium 3 Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York, NY 10461, USA; [email protected] * Correspondence: [email protected] (J.L.); [email protected] (L.D.F.); Tel.: +34-93-5868936 (J.L.); +1-718-430-4225 (L.D.F.) Received: 24 October 2020; Accepted: 14 November 2020; Published: 18 November 2020 Abstract: Metallocarboxypeptidase Z (CPZ) is a secreted enzyme that is distinguished from all other members of the M14 metallocarboxypeptidase family by the presence of an N-terminal cysteine-rich Frizzled-like (Fz) domain that binds Wnt proteins. Here, we present a comprehensive analysis of the enzymatic properties and substrate specificity of human CPZ. To investigate the enzymatic properties, we employed dansylated peptide substrates. For substrate specificity profiling, we generated two different large peptide libraries and employed isotopic labeling and quantitative mass spectrometry to study the substrate preference of this enzyme. Our findings revealed that CPZ has a strict requirement for substrates with C-terminal Arg or Lys at the P10 position. -
Angiotensin-I-Converting Enzyme and Prolyl Endopeptidase Inhibitory Peptides from Marine Processing By-Products
instlttiild lctt«rkenny Talcneolaiochta institute Lyit Lelttr Ccanalnn of Technology Angiotensin-I-converting enzyme and prolyl endopeptidase inhibitory peptides from marine processing by-products Julia Wilson Supervisor: Dr. B. Camey, Letterkenny Institute of Technology External Supervisor: Dr, M. Hayes, Teagasc. Ash town, Dublin Submitted to the Higher Education and Training Awards Council in fulfilment of the requirements for the degree of Master of Science by research. Table of Contents Declaration 3 Abstract 4 List of Abbreviations 6 List of Figures 8 List of Tables 10 Publications 11 Acknowledgements 12 Chapter 1: Literature review 1.1 Introduction A 13 1.2 Mackerel and Whelk life history and habitats 14 1.3 Function of ACE-I and PEP inhibitory peptides 16 1.4 Sources of ACE-I and PEP inhibitory peptides 20 1.5 Derivatisation of ACE-I and PEP inhibitory peptides 22 1.5.1 Principles of capillary electrophoresis (CE) 28 1.5.2 Principles of high performance liquid chromatography (HPLC) 31 1.5.3 Principles of mass spectrometry (MS) 33 1.6 Structural properties involved in ACE-I and PEP inhibitory 33 activities of peptides 1.7 Bioactive peptides as functional foods 35 1.7.1 Survival of bioactive peptide inhibitors in vivo 36 1.8 Aims and objectives 38 Chapter 2: Materials and Methods 2.1 General materials and methods 40 2.1.1 Chemicals and reagents 40 2.1.2 Buffer preparation 41 2.1.3 Bradford protein assay 42 1 2.2 Enzyme hydrolytic studies 43 2.2.1 Sample pre-treatments 43 2.2.2 Hydrolytic enzymes and hydrolytic reactions 45 2.3 Colorimetric -
Amino Acid Side Chain Conformation in Angiotensin II and Analogs
Proc. Nati. Acad. Sci. USA Vol. 77, No. 1, pp. 82-86, January 1980 Biochemistry Amino acid side chain conformation in angiotensin II and analogs: Correlated results of circular dichroism and 1H nuclear magnetic resonance (peptide hormones/competitive inhibitor/N-methylation/pH titration) F. PIRIou*, K. LINTNER*, S. FERMANDJIAN*, P. FROMAGEOT*, M. C. KHOSLAt, R. R. SMEBYt, AND F. M. BUMPUSt *Service de Biochimie, D)partement de Biologie, Centre d'Etudes Nucl&aires de Saclay, P.B. No. 2, F-91190 Gif-sur-Yvette, France; and tThe Clinic Center, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, Ohio 44106 Communicated by Irvine H. Page, September 4,1979 ABSTRACT [1-Sarcosine,S-isoleucinelangiotensin II (Sar- [Sarl,11e8]Angiotensin II was shown to be a potent antagonist Arg-Val-Tyr-Ile-His-Pro-Ile) has been shown to be a potent an- of the pressor action of antiotensin II (Asp-Arg-Val-Tyr-Ile- tagonist of the pressor action of angiotensin II. With a view to increase half-life in vivo of this peptide, the amino acid residue His-Pro-Phe). However, this and other similar antagonistic at position 4 (tyrosine) or position 5 (isoleucine) was replaced peptides have short half-lives in vivo; the shortness is presum- with the corresponding N-methylated residue. This change ably due to rapid degradation by peptidases (for detailed re- drastically reduced the antagonistic properties of this analog. views, see refs. 1 and 2). With a view to render these peptides The present work was therefore undertaken to investigate the more resistant to enzymatic degradation, the residue at position effect of N-methylation on overall conformation of these pep- tides and to determine the conformational requirements for 4 (tyrosine) or position 5 (isoleucine) was replaced with the maximum agonistic or antagonistic pro rties.