The Role of Microbes in the Nutrition of Detritivorous

Total Page:16

File Type:pdf, Size:1020Kb

The Role of Microbes in the Nutrition of Detritivorous The role of microbes in the nutrition of detritivorous invertebrates: A stoichiometric analysis Thomas Anderson2*, David Pond1, Daniel J. Mayor2 1 2 Natural Environment Research Council, United Kingdom, National Oceanography Centre, United Kingdom Submitted to Journal: Frontiers in Microbiology Specialty Section: Aquatic Microbiology ISSN: 1664-302X Article type: Original Research Article Received on: 07 Nov 2016 Accepted on: 14 Dec 2016 Provisional PDF published on: 14 Dec 2016 Frontiers website link: www.frontiersin.org Citation: Anderson T, Pond D and Mayor DJ(2016) The role of microbes in the nutrition of detritivorous Provisionalinvertebrates: A stoichiometric analysis. Front. Microbiol. 7:2113. doi:10.3389/fmicb.2016.02113 Copyright statement: © 2016 Anderson, Pond and Mayor. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution and reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. This Provisional PDF corresponds to the article as it appeared upon acceptance, after peer-review. Fully formatted PDF and full text (HTML) versions will be made available soon. Frontiers in Microbiology | www.frontiersin.org 1 1 The role of microbes in the nutrition of detritivorous 2 invertebrates: A stoichiometric analysis 3 4 Thomas R. Anderson1*, David W. Pond2 and Daniel J. Mayor1* 5 6 1National Oceanography Centre, Southampton SO14 3ZH, UK 7 8 2Scottish Association for Marine Science, Oban, Argyll PA37 1QA, UK 9 10 * corresponding authors; [email protected]; [email protected] 11 12 Article type: Original research 13 14 Keywords: detritus, microbial loop, stoichiometry, trophic upgrading, polyunsaturated fatty 15 acids, mesopelagic zone 16 17 Article length: 6832 words, 5 Figures 18 19 20 21 Abstract 22 23 Detritus represents an important pool in the global carbon cycle, providing a food source for 24 detritivorous invertebrates that are conspicuous components of almost all ecosystems. Our 25 knowledge of how these organisms meet their nutritional demands on a diet that is typically 26 comprised of refractory, carbon-rich compounds nevertheless remains incomplete. ‘Trophic 27 upgrading’ of detritus by the attached microbial community (enhancement of zooplankton 28 diet by the inclusion of heterotrophic protozoans) represents a potential source of nutrition for 29 detritivores as both bacteria and their flagellated protistan predators are capable of 30 biosynthesizing essential micronutrients such as polyunsaturated fatty acids (PUFAs). There 31 is however a trade-off because although microbes enhance the substrate in terms of its 32 micronutrient content, the quantity of organic carbon is diminished though metabolic losses 33 as energyProvisional passes through the microbial food web. Here, we develop a simple stoichiometric 34 model to examine this trade-off in the nutrition of detritivorous copepods inhabiting the 35 mesopelagic zone of the ocean, focusing on their requirements for carbon and an essential 36 PUFA, docosahexaenoic acid (DHA). Results indicate that feeding on microbes may be a 37 highly favourable strategy for these invertebrates, although the potential for carbon to 38 become limiting when consuming a microbial diet exists because of the inefficiencies of 39 trophic transfer within the microbial food web. Our study highlights the need for improved 40 knowledge at the detritus-microbe-metazoan interface, including interactions between the 41 physiology and ecology of the associated organisms. 42 43 2 44 1. Introduction 45 46 The production of dead and decaying particulate organic matter (‘detritus’ hereafter) may 47 account for as much as 56% of primary production when averaged across a range of 48 ecosystems (Cebrián and Duarte, 1995). This flux of detritus thereby constitutes a significant 49 term in the global carbon cycle (Ciais et al., 2013) and is a major conduit through which 50 organic matter is transported both within and between ecosystems (Bartels et al., 2012). It 51 also provides sustenance to countless detritivorous invertebrates, which we loosely interpret 52 as any animal that has a trophic association with dead organic matter, including organismal 53 egesta. Detritus-detritivore interactions influence the potential for carbon sequestration in 54 both terrestrial and aquatic environments. Understanding the interface between living and 55 dead organic matter is therefore a prerequisite to improving predictions of global 56 biogeochemical cycles and climate (Burd et al., 2016; Luo et al., 2016). 57 58 Detritus is mainly composed of refractory compounds such as structural polysaccharides 59 (Mann, 1988; Kiem and Kögel-Knabner, 2003), but is depleted in micronutrients such as 60 amino acids and fatty acids (Cowie and Hedges, 1996; Pokarzhevskii et al., 1997; Mayor et 61 al., 2011) that are considered essential for the growth of metazoan animals (Müller-Navarra 62 et al., 2000; Anderson et al., 2004; Sampedro et al., 2006; Larsen et al., 2016). The nutritional 63 challenge facing detritivores may, however, be mitigated by the presence of microorganisms 64 that colonize the detrital substrate (Moran and Hodson, 1989; Turley and Mackie, 1994). 65 Detritivores actively ingest this detritus-associated microbial community which, unlike the 66 basal substrate, is readily absorbed and provides a rich source of micronutrients (Bärlocher 67 and Kendrick, 1975; Phillips, 1984; Lawrence et al., 1993; Koski et al., 2005). Indeed, a key 68 functional characteristic of many detritivorous invertebrates is their propensity to shred or 69 fragment detritus (Anderson and Sedell, 1979; Iversen and Poulsen, 2007), an activity that 70 has been proposed to stimulate the production of microbial biomass by increasing the surface 71 area of the substrate, so-called “microbial gardening” (Fenchel, 1970; Mayor et al., 2014). 72 The resulting uplift in the nutritional content of detritus represents a form of “trophic 73 upgrading”, a term which originates from the marine literature and refers to the enhancement 74 of zooplankton growth by the inclusion of micronutrient-rich heterotrophic protozoans in an 75 otherwise herbivorous diet (Klein Breteler et al., 1999). Relying on microbes as a primary 76 source of nutrition does, however come at an energetic cost because their gross growth 77 efficienciesProvisional are typically <30 % (Del Giorgio and Cole, 1988) and the majority of organic 78 carbon in the detrital substrate is therefore lost during the trophic upgrading process. 79 Detritivorous invertebrates thus face a trade-off between consuming a high quality, low 80 quantity diet that is rich in microbes versus the low quality, high quantity detritus (Mayor et 81 al., 2014). 82 83 Here, we use a simple stoichiometric model to examine the extent to which invertebrates 84 maximize growth by incorporating microbes into their diet, using detritivorous zooplankton 85 in the mesopelagic zone (MPZ) of the ocean as a case study. The MPZ extends from the base 86 of the sunlit (euphotic) zone down to ~1000 m and many of the resident organisms are 87 primarily sustained by an estimated global detrital flux of 5-12 Gt C yr-1 (Henson et al., 88 2011). The depth at which organic matter is remineralized within the MPZ influences the 89 residence time of carbon in the oceans and hence global climate (Kwon et al., 2009). Sinking 90 detrital particles in the MPZ exhibit the characteristic poor nutritional status described above, 91 having undergone stripping of the most desirable compounds by bacteria and/or multiple 92 ingestion events by zooplankton (Podgorska and Mundryk, 2003; Wilson et al., 2008). The 93 resulting substrate is thus largely devoid of essential micronutrients such as amino or fatty 3 94 acids (Wakeham et al., 1997; Fileman et al., 1998; Schneider et al., 2003). We suggest that 95 the problem of obtaining sufficient nutrition may be felt acutely by detritivorous zooplankton 96 that permanently reside in the MPZ, e.g. copepods of the genus Oithona that are ubiquitous 97 throughout the world ocean (Gallienne and Robins, 2001; Dahms et al., 2015). Members of 98 this genus are well known to interact with detrital particles (González and Smetacek, 1994; 99 Iversen and Poulsen, 2007), particularly in the mesopelagic (Suzuki et al., 2003). Organisms 100 inhabiting the MPZ experience high hydrostatic pressure and low temperatures, both of 101 which negatively affect the functioning of cellular membranes (Hazel and Williams, 1990). 102 Zooplankton overcome these difficulties by increasing the relative abundance of the essential 103 polyunsaturated fatty acid, docosahexaenoic acid (DHA), in their membranes (Pond et al., 104 2014). Copepods and other highly motile zooplankton also possess myelin-like sheathes 105 around their nerve axons to facilitate rapid escape responses (Raymont et al., 1974; Davis et 106 al., 1999) and DHA has been suggested to be an important component of the associated 107 sphingomyelin lipid pool (Scott et al., 2002). The model presented herein has C and DHA as 108 currencies and is used to examine the trade-off for detritivorous zooplankton when 109 consuming a high quantity, low DHA:C diet (detritus) versus a nutritionally-upgraded diet of 110 microbial biomass present in low quantity, but
Recommended publications
  • Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
    Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages.
    [Show full text]
  • Ecological Importance of Soil Bacterivores for Ecosystem Functions Jean Trap, Michael Bonkowski, Claude Plassard, Cécile Villenave, Eric Blanchart
    Ecological importance of soil bacterivores for ecosystem functions Jean Trap, Michael Bonkowski, Claude Plassard, Cécile Villenave, Eric Blanchart To cite this version: Jean Trap, Michael Bonkowski, Claude Plassard, Cécile Villenave, Eric Blanchart. Ecological impor- tance of soil bacterivores for ecosystem functions. Plant and Soil, Springer Verlag, 2015, 398 (1-2), pp.1-24. 10.1007/s11104-015-2671-6. hal-01214705 HAL Id: hal-01214705 https://hal.archives-ouvertes.fr/hal-01214705 Submitted on 12 Oct 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Manuscript Click here to download Manuscript: manuscrit.doc Click here to view linked References 1 Number of words (main text): 8583 2 Number of words (abstract): 157 3 Number of figures: 7 4 Number of tables: 1 5 Number of appendix: 1 6 7 Title 8 Ecological importance of soil bacterivores on ecosystem functions 9 10 Authors 11 Jean Trap1, Michael Bonkowski2, Claude Plassard3, Cécile Villenave4, Eric Blanchart1 12 13 Affiliations 14 15 1Institut de Recherche pour le Développement – UMR Eco&Sols, 2 Place Viala, 34060, Version postprint 16 Montpellier, France 17 2Dept. of Terrestrial Ecology, Institut of Zoology, University of Cologne, D-50674 Köln, 18 Germany 19 3Institut National de Recherche Agronomique – UMR Eco&Sols, 2 Place Viala, 34060, 20 Montpellier, France 21 4ELISOL environnement, 10 avenue du Midi, 30111 Congenies, France 22 23 1 Comment citer ce document : Trap, J., Bonkowski, M., Plassard, C., Villenave, C., Blanchart, E.
    [Show full text]
  • About the Book the Format Acknowledgments
    About the Book For more than ten years I have been working on a book on bryophyte ecology and was joined by Heinjo During, who has been very helpful in critiquing multiple versions of the chapters. But as the book progressed, the field of bryophyte ecology progressed faster. No chapter ever seemed to stay finished, hence the decision to publish online. Furthermore, rather than being a textbook, it is evolving into an encyclopedia that would be at least three volumes. Having reached the age when I could retire whenever I wanted to, I no longer needed be so concerned with the publish or perish paradigm. In keeping with the sharing nature of bryologists, and the need to educate the non-bryologists about the nature and role of bryophytes in the ecosystem, it seemed my personal goals could best be accomplished by publishing online. This has several advantages for me. I can choose the format I want, I can include lots of color images, and I can post chapters or parts of chapters as I complete them and update later if I find it important. Throughout the book I have posed questions. I have even attempt to offer hypotheses for many of these. It is my hope that these questions and hypotheses will inspire students of all ages to attempt to answer these. Some are simple and could even be done by elementary school children. Others are suitable for undergraduate projects. And some will take lifelong work or a large team of researchers around the world. Have fun with them! The Format The decision to publish Bryophyte Ecology as an ebook occurred after I had a publisher, and I am sure I have not thought of all the complexities of publishing as I complete things, rather than in the order of the planned organization.
    [Show full text]
  • Effects of a Low Head Dam on a Dominant Detritivore and Detrital Processing in a Headwater Stream
    EFFECTS OF A LOW HEAD DAM ON A DOMINANT DETRITIVORE AND DETRITAL PROCESSING IN A HEADWATER STREAM. A Thesis by BRETT MATTHEW TORNWALL Submitted to the Graduate School Appalachian State University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE May 2011 Department of Biology EFFECTS OF A LOW HEAD DAM ON A DOMINANT DETRITIVORE AND DETRITAL PROCESSING IN A HEADWATER STREAM. A Thesis By BRETT MATTHEW TORNWALL May 2011 APPROVED BY: ____________________________________ Robert Creed Chairperson, Thesis Committee ____________________________________ Michael Gangloff Member, Thesis Committee ____________________________________ Michael Madritch Member, Thesis Committee ____________________________________ Steven Seagle Chairperson, Department of Biology ____________________________________ Edelma D. Huntley Dean, Research and Graduate Studies Copyright by Brett Matthew Tornwall 2011 All Rights Reserved FOREWARD The research detailed in this thesis will be submitted to Oikos, an international peer-reviewed journal owned by John Wiley and Sons Inc. and published by the John Wiley and Sons Inc. Press. The thesis has been prepared according to the guidelines of this journal. ABSTRACT EFFECTS OF A LOW HEAD DAM ON A DOMINANT DETRITIVORE AND DETRITAL PROCESSING IN A HEADWATER STREAM. (May 2011) Brett Matthew Tornwall, B.S., University of Florida M.S., Appalachian State University Chairperson: Robert Creed The caddisfly Pycnopsyche gentilis is a dominant detritivore in southern Appalachian streams. A dam on Sims Creek selectively removes P. gentilis from downstream reaches. I evaluated the breakdown of yellow birch leaves in the presence and absence of P. gentilis using a leaf pack breakdown experiment. Leaf packs were placed in reaches above the dam where P. gentilis is present and below the dam where it is essentially absent.
    [Show full text]
  • Hammill, E., & Clements, C. F. (2020
    Hammill, E. , & Clements, C. F. (2020). Imperfect detection alters the outcome of management strategies for protected areas. Ecology Letters, 23(4), 682-691. https://doi.org/10.1111/ele.13475 Peer reviewed version Link to published version (if available): 10.1111/ele.13475 Link to publication record in Explore Bristol Research PDF-document This is the author accepted manuscript (AAM). The final published version (version of record) is available online via Wiley at https://onlinelibrary.wiley.com/doi/full/10.1111/ele.13475. Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ 1 Imperfect detection alters the outcome of management strategies for protected areas 2 Edd Hammill1 and Christopher F. Clements2 3 1Department of Watershed Sciences and the Ecology Center, Utah State University, 5210 Old 4 Main Hill, Logan, UT, USA 5 2School of Biological Sciences, University of Bristol, Bristol, BS8 1TQ, UK 6 Statement of Authorship. The experiment was conceived by EH following multiple 7 conversations with CFC. EH conducted the experiment and ran the analyses relating to species 8 richness, probability of predators, and number of extinctions. CFC designed and conducted all 9 analyses relating to sampling protocols. EH wrote the first draft
    [Show full text]
  • Coral Reef Food Web ×
    This website would like to remind you: Your browser (Apple Safari 4) is out of date. Update your browser for more × security, comfort and the best experience on this site. Illustration MEDIA SPOTLIGHT Coral Reef Food Web Journey Through the Trophic Levels of a Food Web For the complete illustrations with media resources, visit: http://education.nationalgeographic.com/media/coral-reef-food-web/ A food web consists of all the food chains in a single ecosystem. Each living thing in an ecosystem is part of multiple food chains. Each food chain is one possible path that energy and nutrients may take as they move through the ecosystem. Not all energy is transferred from one trophic level to another. Energy is used by organisms at each trophic level, meaning that only part of the energy available at one trophic level is passed on to the next level. All of the interconnected and overlapping food chains in an ecosystem make up a food web. Similarly, a single organism can serve more than one role in a food web. For example, a queen conch can be both a consumer and a detritivore, or decomposer. Food webs consist of different organism groupings called trophic levels. In this example of a coral reef, there are producers, consumers, and decomposers. Producers make up the first trophic level. A producer, or autotroph, is an organism that can produce its own energy and nutrients, usually through photosynthesis or chemosynthesis. Consumers are organisms that depend on producers or other consumers to get their food, energy, and nutrition. There are many different types of consumers.
    [Show full text]
  • Council of Great Lakes Research Managers Report to The
    Great Council of Report to Great Lakes the International Research Managers Joint Corr~rnission Great Lakes Modeling Summit: Focus on Lake Erie Modeling Summit Planning Committee Council of Great Lakes Research Managers March 2000 ISBN 1-894280-17-2 Printed in Canada on Recycled Paper Cover Photos: National Parks Service (background), P. Bertram (left), Romy Myszka (right) Modeling Summit Planning Committee Jan J.H. Ciborowski, Joseph V. DePinto, David M. Dolan, Joseph F. Koonce, and W. Gary Sprules On behalf of the Council of Great Lakes Research Managers we would like to thank the authors for contributing white papers for the summit and the following Panel members: Bob Lange, New York State Department of Environmental Conservation; Tim Johnson and Tom Stewart, Ontario Ministry of Natural Resources; Glenn Warren, Environmental Protection Agency, Great Lakes National Program Office; and Todd Howell, Ontario Ministry of Environment. We would also like to thank Carl Walters, Institute of Animal Resource Ecology, University of British Columbia for his plenary presentation, Modeling, Management, and Adaptive Policy Destgn: A History of Good Intentions Gone Astray. Editors: Lisa A. Tulen and Joseph V. DePinto Graphic Design: Bruce Jarnieson A suggested citation for this document: Council of Great Lakes Research Managers. 2000. Great Lakes Modeling Summit: Focus on Lake Erie. Tulen, Lisa A. and Joseph V. DePinto, [Eds.]. InternationalJoint Commission, Windsor, Ontario. TABLE OF CONTENTS I Background I1 Introduction I11 Discussions and Results
    [Show full text]
  • Environmental Warming Alters Food-Web Structure and Ecosystem
    letters to nature attention to those events which give a variance reduction greater 15. Jeanloz, R. & Wenk, H.-R. Convection and anisotropy of the inner core. Geophys. Res. Lett. 15, 72±75 than 70%. Most core-sensitive modes are also sensitive to mantle (1988). 16. Karato, S. Inner core anisotropy due to magnetic ®eld-induced preferred orientation of iron. Science structure. Some events yield signi®cantly different rotation angles 262, 1708±1711 (1993). for different mantle corrections29,30. We regard this as an indication 17. Yoshida, S., Sumita, I. & Kumazagawa, M. Growth model of the inner core coupled with the outer core of serious noise contamination, and discard these events for a dynamics and the resulting elastic anisotropy. J. Geophys. Res. 101, 28085±28103 (1997). 18. Bergman, M. I. Measurements of elastic anisotropy due to solidi®cation texturing and the implica- particular mode. This conservative choice sometimes results in very tions for the Earth's inner core. Nature 389, 60±63 (1997). few events to constrain the rotation rate for individual modes; for 19. Su, W-J. & Dziewonski, A. M. Inner core anisotropy in three dimensions. J. Geophys. Res. 100, 9831± example, only nine events constrain the rate for mode 3S2, and the 9852 (1995). rotation rate determined for this mode is less certain. We plot the 20. Shearer, P.M. & Toy, K. M. PKP(BC) versus PKP(DF) differential travel times and aspherical structure in Earth's inner core. J. Geophys. Res. 96, 2233±2247 (1991). apparent rotation angles for several modes as a function of event date 21.
    [Show full text]
  • Nature's Garbage Collectors
    R3 Nature’s Garbage Collectors You’ve already learned about producers, herbivores, carnivores and omnivores. Take a moment to think or share with a partner: what’s the difference between those types of organisms? You know about carnivores, which are animals that eat other animals. An example is the sea otter. You’ve also learned about herbivores, which only eat plants. Green sea turtles are herbivores. And you’re very familiar with omnivores, animals that eat both animals and plants. You are probably an omnivore! You might already know about producers, too, which make their food from the sun. Plants and algae are examples of producers. Have you ever wondered what happens to all the waste that everything creates? As humans, when we eat, we create waste, like chicken bones and banana peels. Garbage collectors take this waste to landfills. And after our bodies have taken all the energy and vitamins we need from food, we defecate (poop) the leftovers that we can’t use. Our sewerage systems take care of this waste. But what happens in nature? Sea otters and sea turtles don’t have landfills or toilets. Where does their waste go? There are actually organisms in nature that take care of these leftovers and poop. How? Instead of eating fresh animals or plants, these organisms consume waste to get their nutrients. There are three types of these natural garbage collectors -- scavengers, detritivores, and decomposers. You’ve probably already met (and maybe even eaten) a few of them. Scavengers Scavengers are animals that eat dead, decaying animals and plants.
    [Show full text]
  • And Detritus-Based Food Chain in the Micro-Food Web of an Arable Soil by Plant Removal
    RESEARCH ARTICLE Disentangling the root- and detritus-based food chain in the micro-food web of an arable soil by plant removal Olena Glavatska1, Karolin MuÈ ller2, Olaf Butenschoen3, Andreas Schmalwasser4, Ellen Kandeler2, Stefan Scheu3,5, Kai Uwe Totsche4, Liliane Ruess1* 1 Institute of Biology, Ecology Group, Humboldt-UniversitaÈt zu Berlin, Berlin, Germany, 2 Institute of Soil Science and Land Evaluation, Soil Biology Department, University of Hohenheim, Stuttgart, Germany, 3 J.F. Blumenbach Institute of Zoology and Anthropology, Georg August University of GoÈttingen, GoÈttingen, a1111111111 Germany, 4 Institute of Geosciences, Hydrogeology Section, Friedrich Schiller University of JenaJena, a1111111111 Germany, 5 Centre of Biodiversity and Sustainable Land Use, University of GoÈttingen, GoÈttingen, Germany a1111111111 a1111111111 * [email protected] a1111111111 Abstract Soil food web structure and function is primarily determined by the major basal resources, OPEN ACCESS which are living plant tissue, root exudates and dead organic matter. A field experiment was Citation: Glavatska O, MuÈller K, Butenschoen O, performed to disentangle the interlinkage of the root-and detritus-based soil food chains. An Schmalwasser A, Kandeler E, Scheu S, et al. (2017) arable site was cropped either with maize, amended with maize shoot litter or remained Disentangling the root- and detritus-based food chain in the micro-food web of an arable soil by bare soil, representing food webs depending on roots, aboveground litter and soil organic plant removal. PLoS ONE 12(7): e0180264. https:// matter as predominant resource, respectively. The soil micro-food web, i.e. microorganisms doi.org/10.1371/journal.pone.0180264 and nematodes, was investigated in two successive years along a depth transect.
    [Show full text]
  • Detritivorous Earthworms Directly Modify the Structure, Thus Altering the Functioning of a Microdecomposer Food Web
    Soil Biology & Biochemistry 40 (2008) 2511–2516 Contents lists available at ScienceDirect Soil Biology & Biochemistry journal homepage: www.elsevier.com/locate/soilbio Detritivorous earthworms directly modify the structure, thus altering the functioning of a microdecomposer food web Manuel Aira a,1, Luis Sampedro b,*,1, Fernando Monroy a, Jorge Domı´nguez a a Departamento de Ecoloxı´a e Bioloxı´a Animal, Universidade de Vigo, Vigo E-36310, Espan˜a, Spain b Centro de Investigacio´n Ambiental de Louriza´n, Departamento de Ecoloxia, Aptdo. 127, Pontevedra E-36080, Galicia, Spain article info abstract Article history: Epigeic earthworms are key organisms in fresh organic matter mounds and other hotspots of hetero- Received 27 February 2008 trophic activity. They turn and ingest the substrate intensively interacting with microorganisms and Received in revised form 5 May 2008 other soil fauna. By ingesting, digesting and assimilating the surrounding substrate, earthworms could Accepted 16 June 2008 directly modify the microdecomposer community, yet little is known of such direct effects. Here we Available online 15 July 2008 investigate the direct effects of detritivore epigeic earthworms on the structure and function of the decomposer community. We characterized changes in the microfauna, microflora and the biochemical Keywords: properties of the organic substrate over a short time (72 h) exposure to 4 different densities of the Decomposition rates earthworm Eisenia fetida using replicate mesocosms (500 ml). We observed a strong and linear density- Dissolved organic matter Ergosterol content dependent response of the C and N mineralization to the detritivore earthworm density. Earthworm Mesocosm experiment density also linearly increased CO2 efflux and pools of labile C and inorganic N.
    [Show full text]
  • Short Term Shifts in Soil Nematode Food Web Structure and Nutrient Cycling Following Sustainable Soil Management in a California Vineyard
    SHORT TERM SHIFTS IN SOIL NEMATODE FOOD WEB STRUCTURE AND NUTRIENT CYCLING FOLLOWING SUSTAINABLE SOIL MANAGEMENT IN A CALIFORNIA VINEYARD A Thesis presented to the Faculty of California Polytechnic State University, San Luis Obispo In Partial Fulfillment of the Requirements for the Degree Master of Science in Agriculture with a Specialization in Soil Science by Holly M. H. Deniston-Sheets April 2019 © 2019 Holly M. H. Deniston-Sheets ALL RIGHTS RESERVED ii COMMITTEE MEMBERSHIP TITLE: Short Term Shifts in Soil Nematode Food Feb Structure and Nutrient Cycling Following Sustainable Soil Management in a California Vineyard AUTHOR: Holly M. H. Deniston-Sheets DATE SUBMITTED: April 2019 COMMITTEE CHAIR: Cristina Lazcano, Ph.D. Assistant Professor of Natural Resources & Environmental Sciences COMMITTEE MEMBER: Bwalya Malama, Ph.D. Associate Professor of Natural Resources & Environmental Sciences COMMITTEE MEMBER: Katherine Watts, Ph.D Assistant Professor of Chemistry and Biochemistry iii ABSTRACT Short term shifts in soil nematode food web structure and nutrient cycling following sustainable soil management in a California vineyard Holly M. H. Deniston-Sheets Evaluating soil health using bioindicator organisms has been suggested as a method of analyzing the long-term sustainability of agricultural management practices. The main objective of this study was to determine the effects of vineyard management strategies on soil food web structure and function, using nematodes as bioindicators by calculating established nematode ecological indices. Three field trials were conducted in a commercial Pinot Noir vineyard in San Luis Obispo, California; the effects of (i) fertilizer type (organic and inorganic), (ii) weed management (herbicide and tillage), and (iii) cover crops (high or low water requirements) on nematode community structure, soil nutrient content, and crop quality and yield were analyzed.
    [Show full text]