A Abiotic, 28, 148–151, 157, 159, 160, 164–166, 168, 170, 171, 197, 207, 218 Abrolhos Bank, 167 Acanthaster, 11, 43, 82, 85
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Index A Aquarium-fish trade, 8 Abiotic, 28, 148–151, 157, 159, 160, 164–166, 168, 170, 171, Arabian Gulf, 135, 139, 142, 155, 220 197, 207, 218 Arabian/Persian Gulf, 244 Abrolhos Bank, 167 Aragonite, 19, 21, 25, 26, 28, 33–39, 55, 83, 106, 108, 158, 223, 233, Acanthaster, 11, 43, 82, 85–87, 118, 122, 128, 162, 180, 191, 206, 207, 234, 240, 246 221, 232, 238, 247 calcite oceans, 21 Acanthurids, 185, 249 calcite seas, 25 Acanthurus, 187, 249 saturation state, 83, 106, 223, 234, 236 Acclimation, 135–138 seas, 35, 240 potential, 137, 138 Archaea, 121 Acclimatization, 134–139, 141–143, 234, 244 Arms race, 246 Accommodation space, 28, 34, 46–48 Arothron, 68, 76, 81 Accretion, 6, 19, 47, 48, 50, 57–59, 69, 152, 158, 184, 187, 202, 203, Asexual reproduction, 86, 102, 127 224, 245, 246 Aspergillus, 154 Accretion patterns, 59 Assimilation, 104, 105 Acidification, 83, 91, 112, 139, 142, 204, 208, 224 Assisted migration, 142, 226 Acquisition of zooxanthellae, 102–104 Astralium, 118 Acropora, 11, 38, 39, 43, 51, 60, 62, 85–87, 125, 127, 128, 136, Astreopora, 237, 243 137, 139–141, 143, 156–158, 203, 204, 206, 219, 221, Astropyga, 161 235–241, 243, 244 Aswan Dam, 179, 191 Acute disturbances, 11, 92, 218, 219, 221, 222, 224, 225 Atoll, 6, 8–10, 39, 46, 51, 69, 73, 182, 184, 186, 190, 196, 245, 256 Adaptation, 104–108, 128, 134–136, 138–143, 217, 234, 235, 244 Autotrophy, 240 Adaptive potential, 143 Aeromonas, 159 Agaricia, 57, 60, 166 B Age-class strength, 180 Bacillus, 153 Alacranes Reef, 159 Bacteria, 3, 18, 19, 24, 32, 71–73, 104, 119, 121, 129, 138, 148, 150, Alcaligenes, 159 153–157, 159–162, 164, 165, 168, 180 Algae Bahamas, 52, 75, 153, 171, 200, 205, 254 endolithic, 4, 5, 71 Barbados, 62, 73, 75, 79, 83, 85, 161, 162 epilithic, 4, 82 Barcoding, 118–121 Algal turf, 4, 53, 82, 89 Barnacles, 18–20, 71, 74, 78, 81, 164, 185, 186, 239 Allee effect, 167 Barrier reef, 46, 47, 51 Allele frequencies, 140 Basalt, 11, 22, 26, 37, 235, 241, 246 Allopatric speciation, 38, 125 Bay of Bengal, 183 Alpheus, 79, 118, 160 Beggiatoa, 152 Alteromonas, 159 Belize, 58, 60, 79, 81, 119, 153, 154, 159, 160, 166, 200, 204, 205 Amakusaplana, 238 Bermuda, 11, 73, 76, 154, 161, 247, 253 Amazon, 51, 183, 185 Bet-hedging, 233, 251 Ambergris Cay, 159 Big fishes, 246–256 American Samoa, 5, 11, 139, 140, 142, 152, 169, 186, 187, 233, 239, Bindin, 33, 91, 125, 241 244, 247 Biodiversity, 6, 10, 91, 128, 142, 151, 165, 166, 168, 171, 191, 226 Ammonium, 104, 105, 180, 185, 234, 240 Bioeroder, 19, 20, 53, 58, 68–81, 83, 85–87, 92, 167, 238, 246 Amoebocytes, 76 Bioerosion, 20, 36, 38, 45, 54, 56–59, 67–92, 139, 161, 166, 187, 199, Anemonia, 137, 138 205, 224, 245, 246 Anoxic, 137, 138 Biofilms, 235 Antecedent topography, 54–55 Biogeochemical cycles, 128 Antibiotic, 138, 149, 167, 171, 221 Biogeographic, 183, 234 Antimicrobial, 153, 168 Biogeography, 6 Apex predators, 3, 247, 248 Bioherm, 18, 19, 35, 55 Aplysina, 153, 167 Bioinformatics, 117 # Springer Science+Business Media Dordrecht 2015 265 C. Birkeland (ed.), Coral Reefs in the Anthropocene, DOI 10.1007/978-94-017-7249-5 266 Index Biomineralization, 27, 33 Clionaid bioerosion, 76 Biosphere, 6–7, 180 Clostridium, 161 Biotic, 18, 24, 27, 36, 45, 62, 86, 148–151, 157, 162, 164–166, Coccolithophorid, 18, 24, 26–28, 35, 190 168–171, 184, 197, 207, 217, 218, 222 Codium, 185, 240 Biscayne bay, 168 Coelobite, 68 Black band disease (BBD), 72, 154, 155, 166, 169 COI-based barcoding, 118 Bleaching, 43, 44, 50, 51, 60, 62, 70, 82–84, 87, 89–92, 101, 103, 104, Colpophyllia, 154 106, 107, 110, 111, 113, 135, 136, 138–141, 150, 153–157, 168, Compensation depth, 185 170, 205, 207, 218, 220–224, 226, 234, 238, 240, 244, 247 Competition, 2, 36, 54, 55, 70, 71, 88, 108, 127, 166, 169, 185, 189, calcification, 103 196, 197, 206, 207, 233, 239, 241, 244, 248, 249, 255 disease, 62 Complexity, 10, 55, 81, 86, 87, 89, 91, 169, 170, 190, 191, 197, 208, resistance, 135, 136, 138, 139 209, 223, 224, 235, 237, 239, 245, 246, 250 Bocas del Toro, 167 Connectivity, 122, 218, 224, 226, 234–237 Body size, 197, 232, 248, 249, 251 Conservation, 62, 92, 109, 118, 128, 142, 143, 154, 171, 186, 197, Bolbometopon, 198, 205, 247, 249, 251 207–209, 247, 256 Bonaire, 8, 9, 72, 73, 75, 76, 80, 81, 156, 254 medicine, 171 Broadcast-spawner, 237 Consumer biomass, 4 Brooklynella, 164 Continental effects, 186 Budget, 47, 57, 69, 83, 89, 90, 92 Cook Islands, 8, 151, 254 Butterflyfishes, 198, 203, 222, 233, 238 Coral Disease and Health Consortium (CDHC), 154, 171 Coral fish disease, 163 Coral Reef Information System, 154 C Coral Triangle, 125, 220 Calcification, 21, 26, 27, 33, 34, 36, 37, 39, 50, 53, 55, 56, 58, 59, 70, Coralline cyanophyte disease (CCD), 152 83, 84, 89–92, 100, 105–106, 108–110, 112, 113, 128, 135, 137, Coralline fungal disease (CFD), 152, 168 139, 158, 168, 184, 223, 239, 245, 246 Coralline lethal disease (CLD), 152 Calcinus, 120 Coralline lethal orange disease (CLOD), 151, 152 Calcite, 19, 21, 24, 26, 33, 35, 36, 55 Coralline target phenomena (CTP), 152 seas, 241, 245, 246 Coralline white band syndrome (CWBS), 152 Calcium carbonate budget, 83, 89–90, 92 Coralliophila, 222, 238 Cambrian, 26, 27, 33, 36, 68, 71 Corallivore, 82, 87, 103, 196–199, 203–208, 218, 222, 223, 238, 248 Caranx, 8, 255 Coriolis effect, 180–182, 184 Carbon cycle, 25, 26, 35 Cost, 8, 10, 56, 62, 109–112, 129, 141, 232, 234, 240, 244, 253, 254 Carbon dioxide cycle, 25 Cost-benefit, 110–111 Carbon fixation, 102, 104, 105, 107 Cretaceous, 24, 26, 28, 30, 32, 35–37, 237, 240–243, 245–246 Carbonate Cretaceous/Paleogene mass extinction, 240 budget, 57, 59, 68, 69, 83, 90, 92 Crustacea, 73, 75, 78 mineral, 21, 26, 83, 223 Crustaceans, 74, 78, 160–161, 238 production, 6, 18, 24, 34, 35, 38, 47, 48, 51, 56–59, 81, 83, 86, 184 Crustose coralline algae, 73, 152, 187, 188, 202, 233, 241 sediment, 18, 19, 28, 34, 36, 73 Cryogenian, 24, 32 Carboniferous, 24, 26, 34 Cryptic species, 118 Caretta, 164 Curac¸ao, 12, 57, 60, 80, 153, 167, 200 Caribbean, 5–8, 11, 38, 47, 48, 51–53, 56, 58, 60–62, 71, 72, 77–79, 81, Curios trade, 9 82, 84, 86, 89–90, 102, 118, 125, 137, 140, 151–155, 158, Cyanobacteria, 2, 3, 22, 24, 26, 32, 33, 35, 71–73, 82, 104, 153, 155, 160–162, 164, 166–171, 184–185, 188, 190, 196, 200, 201, 204, 157, 180, 203 205, 207, 219–222, 224, 225, 238, 239, 242, 243, 246, 247 Cycle, 25, 39, 44, 47, 48, 60, 102, 108, 109, 150, 163, 165, 166, Caribbean yellow band disease (CYBD), 158, 169 224, 225 Catch-per-unit-effort (CPUE), 7, 247, 252 Cyclones, 12, 184, 219, 220 Cenozoic, 37–38, 71 Cephalopholis, 249–251 Chaetodon, 149, 158, 198, 204, 238 D Chasmolith, 70 Daldorfia, 120 Cheilinus, 254 Daly, 46, 47 Chelonia, 164, 165 Damselfish neurofibromatosis (DNF), 163 Chemotaxis, 103 Damselfish virus-like agent (DVLA), 163 Chiton, 19, 71, 75, 79 Damselfishes, 162, 185, 198, 199, 201–205, 207, 249 Chlorophyta, 72 Dark spot syndrome (DSS), 158 Chronic, 11, 13, 137, 157, 166, 168, 218, 219, 221–223, 225, 226, 234, Darwin Point, 51 244, 245 Darwin, C., 45–47, 50, 53, 68, 184 Chronic disturbances, 11, 218, 221, 222, 225, 226, 234 Data, 45, 47, 51, 54, 57, 60, 62, 86, 87, 90, 117, 118, 121–123, 125, Chronic stress, 222, 234–236 127–129, 135, 139, 140, 143, 150, 158, 159, 162, 170, 171, 202, Clade, 102, 103, 106, 108, 119, 140, 141, 143, 157, 241 203, 219, 224, 233, 242, 243, 245, 247, 248, 251, 252 Climate, 7, 24, 28, 31, 32, 37, 39, 45, 47, 51, 59, 60, 83, 86, 90, 111, Dead zones, 180 113, 128, 133–143, 167, 170, 218, 232, 236, 237, 244 Degradation, 10, 53, 60, 62, 81, 87, 113, 127, 148, 151, 167, 183, 197, change, 7, 24, 45, 59, 83, 86, 90–91, 111, 113, 128, 133–143, 167, 207, 209, 222, 224, 225 170, 225, 232, 236, 237 Degree heating weeks (DHW), 220 Index 267 Development, 8, 12, 24, 30–32, 35, 37, 43, 44, 46, 47, 51, 53, 54, 60, 68, Extinction, 8, 27, 32, 35–39, 89, 128, 134, 138, 184, 207, 238, 240–245 70, 79, 85, 90, 91, 103, 111, 112, 118, 140, 147–149, 152, 156, Extrachromosomal DNAs (EDNA), 163 158, 162, 164, 165, 167, 180, 183, 190, 207, 222, 234, 237, 245, Extractive-based economy, 253 247, 250 Devonian, 33, 36, 48, 49 Diadema, 11, 43, 75, 80, 85, 86, 89, 123, 151, 161, 166, 167, 191, 207, F 219, 221, 226 Faustian corals, 243 Diagenesis, 44 Favia, 127, 141, 207 Dictyosphaeria, 87 Fecundity, 7, 12, 13, 160, 218, 221, 225, 232–237, 240, 247, 249–252 Diet, 3, 4, 7, 57, 79, 125, 128, 189 Fertilization, 125, 127, 161, 185, 187, 202, 218, 221, 223, 225, 232, Dinoflagellate, 99–102, 128, 157, 226 234, 245 toxicity, 184 Fertilizer, 9, 92, 112, 180 Diploastrea, 243, 245 Fibropapilloma-associated turtle herpesvirus (FPTHV), 164 Diploria, 77, 154 Fibropapillomatosis, 151, 164, 170 Dispersal, 86, 109, 121–123, 128, 134, 141–143, 197, 220, 225, 235 Fiji, 8, 9, 151 Disturbances, 7, 11, 12, 70, 81, 82, 86, 89, 92, 147, 151, 167, 217–222, Filamentous algae, 156, 158, 185, 187 224–226, 234, 244, 248 Filefishes, 81, 98 Disease, 9–12, 43, 44, 60, 62, 81, 82, 89, 112, 121, 123, 128, 148–151, Fisheries, 2, 6–8, 10, 87, 89, 90, 92, 118, 123, 128, 153, 160, 169, 179, 153–158, 160–171, 191, 206–208, 218, 220–223, 226, 232, 182, 190, 191, 198, 224, 226, 247, 248, 250, 252–254, 256 238, 240 Fixed nitrogen, 180 Dispersal, 86, 121–123, 128, 134, 141–143, 191, 197, 220, 225, 235 Florida, 8, 19, 33, 50, 83, 89, 90, 139, 140, 142, 151, 153, 155, 156, 158, Diversity, 3, 5, 6, 9–11, 19, 32–34, 38, 44, 45, 50, 53, 55, 57, 59, 60, 68, 160, 161, 163, 164, 166–168, 171, 200, 201, 203, 205, 254 70, 87, 89, 100–102, 109, 110, 112, 113, 118–122, 125, 128, Bay, 19, 50, 151, 160, 166 129, 138–143, 151, 164, 167, 181, 183, 184, 190, 191, 196,