Cyanobacterial Heterocysts
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Periodic and Coordinated Gene Expression Between a Diazotroph and Its Diatom Host
The ISME Journal (2019) 13:118–131 https://doi.org/10.1038/s41396-018-0262-2 ARTICLE Periodic and coordinated gene expression between a diazotroph and its diatom host 1 1,2 1 3 4 Matthew J. Harke ● Kyle R. Frischkorn ● Sheean T. Haley ● Frank O. Aylward ● Jonathan P. Zehr ● Sonya T. Dyhrman1,2 Received: 11 April 2018 / Revised: 28 June 2018 / Accepted: 28 July 2018 / Published online: 16 August 2018 © International Society for Microbial Ecology 2018 Abstract In the surface ocean, light fuels photosynthetic carbon fixation of phytoplankton, playing a critical role in ecosystem processes including carbon export to the deep sea. In oligotrophic oceans, diatom–diazotroph associations (DDAs) play a keystone role in ecosystem function because diazotrophs can provide otherwise scarce biologically available nitrogen to the diatom host, fueling growth and subsequent carbon sequestration. Despite their importance, relatively little is known about the nature of these associations in situ. Here we used metatranscriptomic sequencing of surface samples from the North Pacific Subtropical Gyre (NPSG) to reconstruct patterns of gene expression for the diazotrophic symbiont Richelia and we – 1234567890();,: 1234567890();,: examined how these patterns were integrated with those of the diatom host over day night transitions. Richelia exhibited significant diel signals for genes related to photosynthesis, N2 fixation, and resource acquisition, among other processes. N2 fixation genes were significantly co-expressed with host nitrogen uptake and metabolism, as well as potential genes involved in carbon transport, which may underpin the exchange of nitrogen and carbon within this association. Patterns of expression suggested cell division was integrated between the host and symbiont across the diel cycle. -
Differential Transcriptional Analysis of the Cyanobacterium Cyanothece Sp
JOURNAL OF BACTERIOLOGY, June 2008, p. 3904–3913 Vol. 190, No. 11 0021-9193/08/$08.00ϩ0 doi:10.1128/JB.00206-08 Copyright © 2008, American Society for Microbiology. All Rights Reserved. Differential Transcriptional Analysis of the Cyanobacterium Cyanothece sp. Strain ATCC 51142 during Light-Dark and Continuous-Light Growthᰔ† Jo¨rg Toepel,1 Eric Welsh,2 Tina C. Summerfield,1 Himadri B. Pakrasi,2 and Louis A. Sherman1* Purdue University, Department of Biological Sciences, 201 S. University Street, West Lafayette, Indiana 47907,1 and Washington University, Department of Biology, Reebstock Hall, St. Louis, Missouri 631302 Received 9 February 2008/Accepted 26 March 2008 We analyzed the metabolic rhythms and differential gene expression in the unicellular, diazotrophic cya- nobacterium Cyanothece sp. strain ATCC 51142 under N2-fixing conditions after a shift from normal 12-h light-12-h dark cycles to continuous light. We found that the mRNA levels of ϳ10% of the genes in the genome demonstrated circadian behavior during growth in free-running (continuous light) conditions. The genes for Downloaded from N2 fixation displayed a strong circadian behavior, whereas photosynthesis and respiration genes were not as tightly regulated. One of our main objectives was to determine the strategies used by these cells to perform N2 fixation under normal day-night conditions, as well as under the greater stress caused by continuous light. We determined that N2 fixation cycled in continuous light but with a lower N2 fixation activity. Glycogen degra- dation, respiration, and photosynthesis were also lower; nonetheless, O2 evolution was about 50% of the normal peak. We also demonstrated that nifH (encoding the nitrogenase Fe protein), nifB, and nifX were strongly induced in continuous light; this is consistent with the role of these proteins during the assembly of the enzyme jb.asm.org complex and suggested that the decreased N2 fixation activity was due to protein-level regulation or inhibition. -
Identification of Cell Surface Sugars in N2-Fixing Cyanobacterium
254 Proceedings of the South Dakota Academy of Science, Vol. 97 (2018) IDENTIFICATION OF CELL SURFACE SUGARS IN N2-FIXING CYANOBACTERIUM CYANOTHECE ATCC 51142 USING FLUORESCEIN LABELED LECTINS James Young, Michael Hildreth and Ruanbao Zhou* Department of Biology and Microbiology South Dakota State University Brookings, SD 57007 *Corresponding author email: [email protected] ABSTRACT Some cyanobacteria carry out both O2-producing photosynthesis and O2-sensitive nitrogen fixation, making them unique contributors to global carbon and nitrogen cycles and potential contributors to industrial and agricul- tural applications. Much research has focused on how cyanobacteria protect the O2-sensitive N2-fixing enzyme, nitrogenase. Cyanobacteria separate these two incompatible biochemical processes either spatially, in filamentous 2N -fixing cyanobacteria, or temporally, in unicellular cyanobacteria. Approximately 10% of the vegetative cells in filamentous N2-fixing cyanobacteria such as Anabaena spp. become heterocysts that are present singly at semiregular intervals along the filaments. Heterocysts are morphologically and biochemically specialized for N2-fixation. By sequestering nitrogenase within heterocysts, Anabaena spp. can carry out, simultaneously, oxygenic photosynthesis and the O2-labile assimilation of N2. Heterocysts have three mechanisms to protect nitrogenase: (1) form an additional two-layer of cell wall with a layer of glycolipids and an outer, protec- tive layer of specific polysaccharides to block the environmental 2O ; (2) stop O2 production by shutting down PSII; and (3) increase respiration to consume O2. Unlike filamentous cyanobacteria,Cyanothece ATCC 51142 (hereafter cya- nothece), a unicellular cyanobacterium, rhythmically separates photosynthesis and nitrogen fixation. However, cyanothece still has to deal with environmen- tal oxygen. Little is known about how cyanothece protects nitrogenase from inactivation by environmental O2. -
Characterization of a Gene Controlling Heterocyst Differentiation in the Cyanobacterium Anabaena 7120
Downloaded from genesdev.cshlp.org on September 25, 2021 - Published by Cold Spring Harbor Laboratory Press Characterization of a gene controlling heterocyst differentiation in the cyanobacterium Anabaena 7120 William J. Buikema and Robert Haselkorn Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, Illinois 60637 USA Anabaena 7120 mutant 216 fails to differentiate heterocysts. We previously identified a 2.4-kb wild-type DNA fragment able to complement this mutant. We show here that the sequence of this fragment contains a single open reading frame [hetR), encoding a 299-amino-acid protein. Conjugation of deletion subclones of this fragment into strain 216 showed that the /ieti?-coding region is both necessary and sufficient for complementation of the Het~ phenotype. The mutation in 216 is located at nucleotide 535 in the betR gene, converting a serine at position 179 in the wild-type protein to an asparagine in the mutant. Interruption of the hetR gene in wild-type cells results in a mutant phenotype identical to that of 216. Both 216 and wild-type cells containing wild-type hetR on a plasmid display increased frequency of heterocysts, even on media containing fixed nitrogen. These results suggest that hetR encodes a product that is not only essential for but also controls heterocyst development. This putative regulatory protein lacks known structural motifs characteristic of transcription factors and probably acts at a level one or more steps removed from its target genes. [Key Words: Cyanobacteria; heterocyst; nitrogen fixation; Anabaena 7120; regulation; development] Received December 7, 1990; accepted December 28, 1990. Cyanobacteria are a diverse family of prokaryotes that Wolk 1973; Haselkorn 1978; Stewart 1980; Wolk 1982; carry out oxygenic photosynthesis similar to green Carr 1983; Bohme and Haselkorn 1988). -
Rhythmic and Sustained Oscillations in Metabolism and Gene Expression of Cyanothece Sp
ORIGINAL RESEARCH ARTICLE published: 06 December 2013 doi: 10.3389/fmicb.2013.00374 Rhythmic and sustained oscillations in metabolism and gene expression of Cyanothece sp. ATCC 51142 under constant light Sandeep B. Gaudana1†‡, S. Krishnakumar1‡, Swathi Alagesan1, Madhuri G. Digmurti 1, Ganesh A. Viswanathan1, Madhu Chetty 2 and Pramod P.Wangikar1* 1 Department of Chemical Engineering, Indian Institute of Technology Bombay, Powai, Mumbai, India 2 Gippsland School of Information Technology, Monash University, VIC, Australia Edited by: Cyanobacteria, a group of photosynthetic prokaryotes, oscillate between day and night time Thomas E. Hanson, University of metabolisms with concomitant oscillations in gene expression in response to light/dark Delaware, USA cycles (LD).The oscillations in gene expression have been shown to sustain in constant light Reviewed by: (LL) with a free running period of 24 h in a model cyanobacterium Synechococcus elongatus Kathleen Scott, University of South Florida, USA PCC 7942. However, equivalent oscillations in metabolism are not reported under LL in Ivan Berg, Albert-Ludwigs-Universität this non-nitrogen fixing cyanobacterium. Here we focus on Cyanothece sp. ATCC 51142, a Freiburg, Germany unicellular, nitrogen-fixing cyanobacterium known to temporally separate the processes *Correspondence: of oxygenic photosynthesis and oxygen-sensitive nitrogen fixation. In a recent report, Pramod P.Wangikar, Department of metabolism of Cyanothece 51142 has been shown to oscillate between photosynthetic Chemical Engineering, Indian Institute of Technology Bombay, Powai, and respiratory phases under LL with free running periods that are temperature dependent Mumbai 400076, India but significantly shorter than the circadian period. Further, the oscillations shift to circadian e-mail: [email protected] pattern at moderate cell densities that are concomitant with slower growth rates. -
Ultradian Metabolic Rhythm in the Diazotrophic Cyanobacterium Cyanothece Sp
Ultradian metabolic rhythm in the diazotrophic cyanobacterium Cyanothece sp. ATCC 51142 a,1 a,b,1 a,c d a,e,2 Jan Cervený , Maria A. Sinetova , Luis Valledor , Louis A. Sherman , and Ladislav Nedbal aGlobal Change Research Centre–CzechGlobe, Academy of Sciences of the Czech Republic, 664 24 Drásov, Czech Republic; bLaboratory of Intracellular Regulation, Institute of Plant Physiology, Russian Academy of Sciences, Moscow 127276, Russia; cDepartment of Molecular Systems Biology, University of Vienna, A1090 Vienna, Austria; dDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907; and eSystems Biology Laboratory, Faculty of Informatics, Masaryk University, 602 00 Brno, Czech Republic Edited by Steven L. McKnight, The University of Texas Southwestern Medical Center, Dallas, TX, and approved June 26, 2013 (received for review January 31, 2013) The unicellular cyanobacterium Cyanothece sp. American Type Cul- particularly in organisms that do not sustain a stable temperature ture Collection (ATCC) 51142 is capable of performing oxygenic for their metabolism (11). photosynthesis during the day and microoxic nitrogen fixation In Cyanothece the kai genes exist in multiple copies (12), and at night. These mutually exclusive processes are possible only by the Kai proteins have not been studied in the detail achieved for temporal separation by circadian clock or another cellular pro- S. elongatus. The daily modulation of the metabolic activity and fi gram. We report identi cation of a temperature-dependent ultra- gene transcription, namely alternation of photosynthetic and N - dian metabolic rhythm that controls the alternating oxygenic and 2 fixation phases, has been attributed to the control by the circa- microoxic processes of Cyanothece sp. -
Understanding the Physiology of Heterocyst and Nitrogen Fixation in Cyanobacteria Or Blue-Green Algae
Nature and Science, 6(1), 2008, ISSN: 1545-0740, [email protected] Understanding the Physiology of Heterocyst and Nitrogen Fixation in Cyanobacteria or Blue-Green Algae. Dr. Pankaj Sah* *Department of Botany, Kumaun University, Nainital–263002 (Uttarakhand State), India. Email: [email protected] Abstract: Ever since the man started thinking about his origin and evolution, he has sought answer on scientific facts and findings. In nature there are certain tiny microscopic blue-green algae or Cyanobacteria that have immense importance from many aspects ranging primarily from Nitrogen Fixation to the most coveted query – the origin of animal life on this planet. This paper is a peer review into the various physiological aspects of the nitrogen fixation and simultaneous Oxygen evolving mechanisms of blue- green algae. This paper makes the understanding of cyanobacterial nitrogen fixation in the Heterocyst easy, and also links the evolution of free Oxygen (g) from the splitting of water by its vegetative cells and ultimately, the role of Cyanobacteria in altering the primitive earth’s reducing atmosphere into present day oxygenating and thus making animal life possible on earth. [Nature and Science. 2008;6(1):28-33]. ISSN: 1545-0740. Key Words: Cyanobacteria; Blue-Green Algae; Heterocyst; Nitrogen Fixation. Introduction: The blue-green algae or Cyanobacteria are the most primitive form of algae under plant kingdom. These are basically a type of autotrophic bacteria, which are prokaryotic in their cellular structure. These are called as blue-green algae because they contain the photosynthetic pigments- c phycocyanin (dominant pigment), c phycoerythryin, and chlorophyll a, which are responsible for their characteristic blue-green colour. -
Regulatory Rnas in Photosynthetic Cyanobacteria Matthias Kopf and Wolfgang R
FEMS Microbiology Reviews, fuv017, 39, 2015, 301–315 doi: 10.1093/femsre/fuv017 Review Article REVIEW ARTICLE Regulatory RNAs in photosynthetic cyanobacteria Matthias Kopf and Wolfgang R. Hess∗ Faculty of Biology, Institute of Biology III, University of Freiburg, D-79104 Freiburg, Germany ∗ Corresponding author: Faculty of Biology, Institute of Biology III, University of Freiburg, Schanzlestr.¨ 1, D-79104 Freiburg, Germany. Tel: +49-761-203-2796; Fax: +49-761-203-2745; E-mail: [email protected] One sentence summary: Hundreds of potentially regulatory small RNAs (sRNAs) have been identified in model cyanobacteria and, despite recent significant progress, their functional characterization is substantial work and continues to provide surprising insights of general interest. Editor: Emmanuelle Charpentier ABSTRACT Regulatory RNAs play versatile roles in bacteria in the coordination of gene expression during various physiological processes, especially during stress adaptation. Photosynthetic bacteria use sunlight as their major energy source. Therefore, they are particularly vulnerable to the damaging effects of excess light or UV irradiation. In addition, like all bacteria, photosynthetic bacteria must adapt to limiting nutrient concentrations and abiotic and biotic stress factors. Transcriptome analyses have identified hundreds of potential regulatory small RNAs (sRNAs) in model cyanobacteria such as Synechocystis sp. PCC 6803 or Anabaena sp. PCC 7120, and in environmentally relevant genera such as Trichodesmium, Synechococcus and Prochlorococcus. Some sRNAs have been shown to actually contain μORFs and encode short proteins. Examples include the 40-amino-acid product of the sml0013 gene, which encodes the NdhP subunit of the NDH1 complex. In contrast, the functional characterization of the non-coding sRNA PsrR1 revealed that the 131 nt long sRNA controls photosynthetic functions by targeting multiple mRNAs, providing a paradigm for sRNA functions in photosynthetic bacteria. -
Isolation, Growth, and Nitrogen Fixation Rates of the Hemiaulus-Richelia (Diatom-Cyanobacterium) Symbiosis in Culture
Isolation, growth, and nitrogen fixation rates of the Hemiaulus-Richelia (diatom-cyanobacterium) symbiosis in culture Amy E. Pyle1, Allison M. Johnson2 and Tracy A. Villareal1 1 Department of Marine Science and Marine Science Institute, The University of Texas at Austin, Port Aransas, TX, USA 2 St. Olaf College, Northfield, MN, USA ABSTRACT Nitrogen fixers (diazotrophs) are often an important nitrogen source to phytoplankton nutrient budgets in N-limited marine environments. Diazotrophic symbioses between cyanobacteria and diatoms can dominate nitrogen-fixation regionally, particularly in major river plumes and in open ocean mesoscale blooms. This study reports the successful isolation and growth in monocultures of multiple strains of a diatom-cyanobacteria symbiosis from the Gulf of Mexico using a modified artificial seawater medium. We document the influence of light and nutrients on nitrogen fixation and growth rates of the host diatom Hemiaulus hauckii Grunow together with its diazotrophic endosymbiont Richelia intracellularis Schmidt, as well as less complete results on the Hemiaulus membranaceus- R. intracellularis symbiosis. The symbioses rates reported here are for the joint diatom-cyanobacteria unit. Symbiont diazotrophy was sufficient to support both the host diatom and cyanobacteria symbionts, and the entire symbiosis replicated and grew without added nitrogen. Maximum growth rates of multiple strains of H. hauckii symbioses in N-free medium with N2 as the sole N source were − 0.74–0.93 div d 1. Growth rates followed light saturation kinetics in H. hauckii – −2 −1 Submitted 28 April 2020 symbioses with a growth compensation light intensity (EC)of7 16 µmol m s and − − Accepted 16 September 2020 saturation light level (E )of84–110 µmol m 2s 1. -
Cyanobacterial Genome Evolution Subsequent to Domestication by a Plant (Azolla)
Cyanobacterial genome evolution subsequent to domestication by a plant ( A z o l l a ) John Larsson Cyanobacterial genome evolution subsequent to domestication by a plant (Azolla) John Larsson ©John Larsson, Stockholm 2011 ISBN 978-91-7447-313-1 Printed in Sweden by Universitetsservice, US-AB, Stockholm 2011 Distributor: Department of Botany, Stockholm University To Emma, my family, and all my friends. Abstract Cyanobacteria are an ancient and globally distributed group of photosynthetic prokaryotes including species capable of fixing atmospheric dinitrogen (N2) into biologically available ammonia via the enzyme complex nitrogenase. The ability to form symbiotic interactions with eukaryotic hosts is a notable feature of cyanobacteria and one which, via an ancient endosymbiotic event, led to the evolution of chloroplasts and eventually to the plant dominated biosphere of the globe. Some cyanobacteria are still symbiotically competent and form symbiotic associations with eukaryotes ranging from unicellular organisms to complex plants. Among contemporary plant-cyanobacteria associations, the symbiosis formed between the small fast-growing aquatic fern Azolla and its cyanobacterial symbiont (cyanobiont), harboured in specialized cavities in each Azolla leaf, is the only one which is perpetual and in which the cyanobiont has lost its free-living capacity, suggesting a long-lasting co- evolution between the two partners. In this study, the genome of the cyanobiont in Azolla filiculoides was sequenced to completion and analysed. The results revealed that the genome is in an eroding state, evidenced by a high proportion of pseudogenes and transposable elements. Loss of function was most predominant in genetic categories related to uptake and metabolism of nutrients, response to environmental stimuli and in the DNA maintenance machinery. -
The Nitrogen Stress-Repressed Srna Nsrr1 Regulates Expression of All1871, a Gene Required for Diazotrophic Growth in Nostoc Sp
life Article The Nitrogen Stress-Repressed sRNA NsrR1 Regulates Expression of all1871, a Gene Required for Diazotrophic Growth in Nostoc sp. PCC 7120 Isidro Álvarez-Escribano, Manuel Brenes-Álvarez , Elvira Olmedo-Verd, Agustín Vioque and Alicia M. Muro-Pastor * Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Sevilla, Spain; [email protected] (I.Á.-E.); [email protected] (M.B.-Á.); [email protected] (E.O.-V.); [email protected] (A.V.) * Correspondence: [email protected]; Tel.: +34-954489521 Received: 25 March 2020; Accepted: 27 April 2020; Published: 29 April 2020 Abstract: Small regulatory RNAs (sRNAs) are post-transcriptional regulators of bacterial gene expression. In cyanobacteria, the responses to nitrogen availability, that are mostly controlled at the transcriptional level by NtcA, involve also at least two small RNAs, namely NsiR4 (nitrogen stress-induced RNA 4) and NsrR1 (nitrogen stress-repressed RNA 1). Prediction of possible mRNA targets regulated by NsrR1 in Nostoc sp. PCC 7120 allowed, in addition to previously described nblA, the identification of all1871, a nitrogen-regulated gene encoding a protein of unknown function that we describe here as required for growth at the expense of atmospheric nitrogen (N2). We show that transcription of all1871 is induced upon nitrogen step-down independently of NtcA. All1871 accumulation is repressed by NsrR1 and its expression is stronger in heterocysts, specialized cells devoted to N2 fixation. We demonstrate specific interaction between NsrR1 and the 50 untranslated region (UTR) of the all1871 mRNA, that leads to decreased expression of all1871. Because transcription of NsrR1 is partially repressed by NtcA, post-transcriptional regulation by NsrR1 would constitute an indirect way of NtcA-mediated regulation of all1871. -
The Evolutionary Diversification of Cyanobacteria: Molecular–Phylogenetic and Paleontological Perspectives
The evolutionary diversification of cyanobacteria: Molecular–phylogenetic and paleontological perspectives Akiko Tomitani†‡, Andrew H. Knoll§¶, Colleen M. Cavanaugh§, and Terufumi Ohno† †The Kyoto University Museum, Kyoto University, Yoshida-honmachi, Sakyo, Kyoto 606-8501, Japan; and §Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138 Contributed by Andrew H. Knoll, February 6, 2006 Cyanobacteria have played a significant role in Earth history as (Stigonematales), vegetative cells can differentiate into morpho- primary producers and the ultimate source of atmospheric oxygen. logically and ultrastructurally distinct heterocysts, cells that To date, however, how and when the group diversified has specialize in nitrogen fixation under aerobic conditions (8), or remained unclear. Here, we combine molecular phylogenetic and akinetes, resting cells that survive environmental stresses such as paleontological studies to elucidate the pattern and timing of early cold and desiccation (9), depending on growth conditions. In cyanobacterial diversification. 16S rRNA, rbcL, and hetR genes were addition, filaments of subsection V have complicated branching sequenced from 20 cyanobacterial strains distributed among 16 patterns. Their developmental variety and complexity are thus genera, with particular care taken to represent the known diversity among the most highly developed in prokaryotes. of filamentous taxa. Unlike most other bacteria, some filamentous The geologic record offers some clues