Challenges in RDF Validation
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Basic Querying with SPARQL
Basic Querying with SPARQL Andrew Weidner Metadata Services Coordinator SPARQL SPARQL SPARQL SPARQL SPARQL Protocol SPARQL SPARQL Protocol And SPARQL SPARQL Protocol And RDF SPARQL SPARQL Protocol And RDF Query SPARQL SPARQL Protocol And RDF Query Language SPARQL SPARQL Protocol And RDF Query Language SPARQL Query SPARQL Query Update SPARQL Query Update - Insert triples SPARQL Query Update - Insert triples - Delete triples SPARQL Query Update - Insert triples - Delete triples - Create graphs SPARQL Query Update - Insert triples - Delete triples - Create graphs - Drop graphs Query RDF Triples Query RDF Triples Triple Store Query RDF Triples Triple Store Data Dump Query RDF Triples Triple Store Data Dump Subject – Predicate – Object Query Subject – Predicate – Object ?s ?p ?o Query Dog HasName Cocoa Subject – Predicate – Object ?s ?p ?o Query Cocoa HasPhoto ------- Subject – Predicate – Object ?s ?p ?o Query HasURL http://bit.ly/1GYVyIX Subject – Predicate – Object ?s ?p ?o Query ?s ?p ?o Query SELECT ?s ?p ?o Query SELECT * ?s ?p ?o Query SELECT * WHERE ?s ?p ?o Query SELECT * WHERE { ?s ?p ?o } Query select * WhErE { ?spiderman ?plays ?oboe } http://deathbattle.wikia.com/wiki/Spider-Man http://www.mmimports.com/wp-content/uploads/2014/04/used-oboe.jpg Query SELECT * WHERE { ?s ?p ?o } Query SELECT * WHERE { ?s ?p ?o } Query SELECT * WHERE { ?s ?p ?o } Query SELECT * WHERE { ?s ?p ?o } LIMIT 10 SELECT * WHERE { ?s ?p ?o } LIMIT 10 http://dbpedia.org/snorql SELECT * WHERE { ?s ?p ?o } LIMIT 10 http://dbpedia.org/snorql SELECT * WHERE { ?s -
Mapping Spatiotemporal Data to RDF: a SPARQL Endpoint for Brussels
International Journal of Geo-Information Article Mapping Spatiotemporal Data to RDF: A SPARQL Endpoint for Brussels Alejandro Vaisman 1, * and Kevin Chentout 2 1 Instituto Tecnológico de Buenos Aires, Buenos Aires 1424, Argentina 2 Sopra Banking Software, Avenue de Tevuren 226, B-1150 Brussels, Belgium * Correspondence: [email protected]; Tel.: +54-11-3457-4864 Received: 20 June 2019; Accepted: 7 August 2019; Published: 10 August 2019 Abstract: This paper describes how a platform for publishing and querying linked open data for the Brussels Capital region in Belgium is built. Data are provided as relational tables or XML documents and are mapped into the RDF data model using R2RML, a standard language that allows defining customized mappings from relational databases to RDF datasets. In this work, data are spatiotemporal in nature; therefore, R2RML must be adapted to allow producing spatiotemporal Linked Open Data.Data generated in this way are used to populate a SPARQL endpoint, where queries are submitted and the result can be displayed on a map. This endpoint is implemented using Strabon, a spatiotemporal RDF triple store built by extending the RDF store Sesame. The first part of the paper describes how R2RML is adapted to allow producing spatial RDF data and to support XML data sources. These techniques are then used to map data about cultural events and public transport in Brussels into RDF. Spatial data are stored in the form of stRDF triples, the format required by Strabon. In addition, the endpoint is enriched with external data obtained from the Linked Open Data Cloud, from sites like DBpedia, Geonames, and LinkedGeoData, to provide context for analysis. -
Validating RDF Data Using Shapes
83 Validating RDF data using Shapes a Jose Emilio Labra Gayo a University of Oviedo, Spain Abstract RDF forms the keystone of the Semantic Web as it enables a simple and powerful knowledge representation graph based data model that can also facilitate integration between heterogeneous sources of information. RDF based applications are usually accompanied with SPARQL stores which enable to efficiently manage and query RDF data. In spite of its well known benefits, the adoption of RDF in practice by web programmers is still lacking and SPARQL stores are usually deployed without proper documentation and quality assurance. However, the producers of RDF data usually know the implicit schema of the data they are generating, but they don't do it traditionally. In the last years, two technologies have been developed to describe and validate RDF content using the term shape: Shape Expressions (ShEx) and Shapes Constraint Language (SHACL). We will present a motivation for their appearance and compare them, as well as some applications and tools that have been developed. Keywords RDF, ShEx, SHACL, Validating, Data quality, Semantic web 1. Introduction In the tutorial we will present an overview of both RDF is a flexible knowledge and describe some challenges and future work [4] representation language based of graphs which has been successfully adopted in semantic web 2. Acknowledgements applications. In this tutorial we will describe two languages that have recently been proposed for This work has been partially funded by the RDF validation: Shape Expressions (ShEx) and Spanish Ministry of Economy, Industry and Shapes Constraint Language (SHACL).ShEx was Competitiveness, project: TIN2017-88877-R proposed as a concise and intuitive language for describing RDF data in 2014 [1]. -
V a Lida T in G R D F Da
Series ISSN: 2160-4711 LABRA GAYO • ET AL GAYO LABRA Series Editors: Ying Ding, Indiana University Paul Groth, Elsevier Labs Validating RDF Data Jose Emilio Labra Gayo, University of Oviedo Eric Prud’hommeaux, W3C/MIT and Micelio Iovka Boneva, University of Lille Dimitris Kontokostas, University of Leipzig VALIDATING RDF DATA This book describes two technologies for RDF validation: Shape Expressions (ShEx) and Shapes Constraint Language (SHACL), the rationales for their designs, a comparison of the two, and some example applications. RDF and Linked Data have broad applicability across many fields, from aircraft manufacturing to zoology. Requirements for detecting bad data differ across communities, fields, and tasks, but nearly all involve some form of data validation. This book introduces data validation and describes its practical use in day-to-day data exchange. The Semantic Web offers a bold, new take on how to organize, distribute, index, and share data. Using Web addresses (URIs) as identifiers for data elements enables the construction of distributed databases on a global scale. Like the Web, the Semantic Web is heralded as an information revolution, and also like the Web, it is encumbered by data quality issues. The quality of Semantic Web data is compromised by the lack of resources for data curation, for maintenance, and for developing globally applicable data models. At the enterprise scale, these problems have conventional solutions. Master data management provides an enterprise-wide vocabulary, while constraint languages capture and enforce data structures. Filling a need long recognized by Semantic Web users, shapes languages provide models and vocabularies for expressing such structural constraints. -
Deciding SHACL Shape Containment Through Description Logics Reasoning
Deciding SHACL Shape Containment through Description Logics Reasoning Martin Leinberger1, Philipp Seifer2, Tjitze Rienstra1, Ralf Lämmel2, and Steffen Staab3;4 1 Inst. for Web Science and Technologies, University of Koblenz-Landau, Germany 2 The Software Languages Team, University of Koblenz-Landau, Germany 3 Institute for Parallel and Distributed Systems, University of Stuttgart, Germany 4 Web and Internet Science Research Group, University of Southampton, England Abstract. The Shapes Constraint Language (SHACL) allows for for- malizing constraints over RDF data graphs. A shape groups a set of constraints that may be fulfilled by nodes in the RDF graph. We investi- gate the problem of containment between SHACL shapes. One shape is contained in a second shape if every graph node meeting the constraints of the first shape also meets the constraints of the second. Todecide shape containment, we map SHACL shape graphs into description logic axioms such that shape containment can be answered by description logic reasoning. We identify several, increasingly tight syntactic restrictions of SHACL for which this approach becomes sound and complete. 1 Introduction RDF has been designed as a flexible, semi-structured data format. To ensure data quality and to allow for restricting its large flexibility in specific domains, the W3C has standardized the Shapes Constraint Language (SHACL)5. A set of SHACL shapes are represented in a shape graph. A shape graph represents constraints that only a subset of all possible RDF data graphs conform to. A SHACL processor may validate whether a given RDF data graph conforms to a given SHACL shape graph. A shape graph and a data graph that act as a running example are pre- sented in Fig. -
Semantic FAIR Data Web Me
SNOMED CT Research Webinar Today’ Presenter WELCOME! *We will begin shortly* Dr. Ronald Cornet UPCOMING WEBINARS: RESEARCH WEB SERIES CLINICAL WEB SERIES Save the Date! August TBA soon! August 19, 2020 Time: TBA https://www.snomed.org/news-and-events/events/web-series Dr Hyeoun-Ae Park Emeritus Dean & Professor Seoul National University Past President International Medical Informatics Association Research Reference Group Join our SNOMED Research Reference Group! Be notified of upcoming Research Webinars and other SNOMED CT research-related news. Email Suzy ([email protected]) to Join. SNOMED CT Research Webinar: SNOMED CT – OWL in a FAIR web of data Dr. Ronald Cornet SNOMED CT – OWL in a FAIR web of data Ronald Cornet Me SNOMED Use case CT Semantic FAIR data web Me • Associate professor at Amsterdam UMC, Amsterdam Public Health Research Institute, department of Medical Informatics • Research on knowledge representation; ontology auditing; SNOMED CT; reusable healthcare data; FAIR data Conflicts of Interest • 10+ years involvement with SNOMED International (Quality Assurance Committee, Technical Committee, Implementation SIG, Modeling Advisory Group) • Chair of the GO-FAIR Executive board • Funding from European Union (Horizon 2020) Me SNOMED Use case CT Semantic FAIR data web FAIR Guiding Principles https://go-fair.org/ FAIR Principles – concise • Findable • Metadata and data should be easy to find for both humans and computers • Accessible • The user needs to know how data can be accessed, possibly including authentication and authorization -
Computational Integrity for Outsourced Execution of SPARQL Queries
Computational integrity for outsourced execution of SPARQL queries Serge Morel Student number: 01407289 Supervisors: Prof. dr. ir. Ruben Verborgh, Dr. ir. Miel Vander Sande Counsellors: Ir. Ruben Taelman, Joachim Van Herwegen Master's dissertation submitted in order to obtain the academic degree of Master of Science in Computer Science Engineering Academic year 2018-2019 Computational integrity for outsourced execution of SPARQL queries Serge Morel Student number: 01407289 Supervisors: Prof. dr. ir. Ruben Verborgh, Dr. ir. Miel Vander Sande Counsellors: Ir. Ruben Taelman, Joachim Van Herwegen Master's dissertation submitted in order to obtain the academic degree of Master of Science in Computer Science Engineering Academic year 2018-2019 iii c Ghent University The author(s) gives (give) permission to make this master dissertation available for consultation and to copy parts of this master dissertation for personal use. In the case of any other use, the copyright terms have to be respected, in particular with regard to the obligation to state expressly the source when quoting results from this master dissertation. August 16, 2019 Acknowledgements The topic of this thesis concerns a rather novel and academic concept. Its research area has incredibly talented people working on a very promising technology. Understanding the core principles behind proof systems proved to be quite difficult, but I am strongly convinced that it is a thing of the future. Just like the often highly-praised artificial intelligence technology, I feel that verifiable computation will become very useful in the future. I would like to thank Joachim Van Herwegen and Ruben Taelman for steering me in the right direction and reviewing my work quickly and intensively. -
Using Rule-Based Reasoning for RDF Validation
Using Rule-Based Reasoning for RDF Validation Dörthe Arndt, Ben De Meester, Anastasia Dimou, Ruben Verborgh, and Erik Mannens Ghent University - imec - IDLab Sint-Pietersnieuwstraat 41, B-9000 Ghent, Belgium [email protected] Abstract. The success of the Semantic Web highly depends on its in- gredients. If we want to fully realize the vision of a machine-readable Web, it is crucial that Linked Data are actually useful for machines con- suming them. On this background it is not surprising that (Linked) Data validation is an ongoing research topic in the community. However, most approaches so far either do not consider reasoning, and thereby miss the chance of detecting implicit constraint violations, or they base them- selves on a combination of dierent formalisms, eg Description Logics combined with SPARQL. In this paper, we propose using Rule-Based Web Logics for RDF validation focusing on the concepts needed to sup- port the most common validation constraints, such as Scoped Negation As Failure (SNAF), and the predicates dened in the Rule Interchange Format (RIF). We prove the feasibility of the approach by providing an implementation in Notation3 Logic. As such, we show that rule logic can cover both validation and reasoning if it is expressive enough. Keywords: N3, RDF Validation, Rule-Based Reasoning 1 Introduction The amount of publicly available Linked Open Data (LOD) sets is constantly growing1, however, the diversity of the data employed in applications is mostly very limited: only a handful of RDF data is used frequently [27]. One of the reasons for this is that the datasets' quality and consistency varies signicantly, ranging from expensively curated to relatively low quality data [33], and thus need to be validated carefully before use. -
Bibliography of Erik Wilde
dretbiblio dretbiblio Erik Wilde's Bibliography References [1] AFIPS Fall Joint Computer Conference, San Francisco, California, December 1968. [2] Seventeenth IEEE Conference on Computer Communication Networks, Washington, D.C., 1978. [3] ACM SIGACT-SIGMOD Symposium on Principles of Database Systems, Los Angeles, Cal- ifornia, March 1982. ACM Press. [4] First Conference on Computer-Supported Cooperative Work, 1986. [5] 1987 ACM Conference on Hypertext, Chapel Hill, North Carolina, November 1987. ACM Press. [6] 18th IEEE International Symposium on Fault-Tolerant Computing, Tokyo, Japan, 1988. IEEE Computer Society Press. [7] Conference on Computer-Supported Cooperative Work, Portland, Oregon, 1988. ACM Press. [8] Conference on Office Information Systems, Palo Alto, California, March 1988. [9] 1989 ACM Conference on Hypertext, Pittsburgh, Pennsylvania, November 1989. ACM Press. [10] UNIX | The Legend Evolves. Summer 1990 UKUUG Conference, Buntingford, UK, 1990. UKUUG. [11] Fourth ACM Symposium on User Interface Software and Technology, Hilton Head, South Carolina, November 1991. [12] GLOBECOM'91 Conference, Phoenix, Arizona, 1991. IEEE Computer Society Press. [13] IEEE INFOCOM '91 Conference on Computer Communications, Bal Harbour, Florida, 1991. IEEE Computer Society Press. [14] IEEE International Conference on Communications, Denver, Colorado, June 1991. [15] International Workshop on CSCW, Berlin, Germany, April 1991. [16] Third ACM Conference on Hypertext, San Antonio, Texas, December 1991. ACM Press. [17] 11th Symposium on Reliable Distributed Systems, Houston, Texas, 1992. IEEE Computer Society Press. [18] 3rd Joint European Networking Conference, Innsbruck, Austria, May 1992. [19] Fourth ACM Conference on Hypertext, Milano, Italy, November 1992. ACM Press. [20] GLOBECOM'92 Conference, Orlando, Florida, December 1992. IEEE Computer Society Press. http://github.com/dret/biblio (August 29, 2018) 1 dretbiblio [21] IEEE INFOCOM '92 Conference on Computer Communications, Florence, Italy, 1992. -
SHACL Satisfiability and Containment
SHACL Satisfiability and Containment Paolo Pareti1 , George Konstantinidis1 , Fabio Mogavero2 , and Timothy J. Norman1 1 University of Southampton, Southampton, United Kingdom {pp1v17,g.konstantinidis,t.j.norman}@soton.ac.uk 2 Università degli Studi di Napoli Federico II, Napoli, Italy [email protected] Abstract. The Shapes Constraint Language (SHACL) is a recent W3C recom- mendation language for validating RDF data. Specifically, SHACL documents are collections of constraints that enforce particular shapes on an RDF graph. Previous work on the topic has provided theoretical and practical results for the validation problem, but did not consider the standard decision problems of satisfiability and containment, which are crucial for verifying the feasibility of the constraints and important for design and optimization purposes. In this paper, we undertake a thorough study of different features of non-recursive SHACL by providing a translation to a new first-order language, called SCL, that precisely captures the semantics of SHACL w.r.t. satisfiability and containment. We study the interaction of SHACL features in this logic and provide the detailed map of decidability and complexity results of the aforementioned decision problems for different SHACL sublanguages. Notably, we prove that both problems are undecidable for the full language, but we present decidable combinations of interesting features. 1 Introduction The Shapes Constraint Language (SHACL) has been recently introduced as a W3C recommendation language for the validation of RDF graphs, and it has already been adopted by mainstream tools and triplestores. A SHACL document is a collection of shapes which define particular constraints and specify which nodes in a graph should be validated against these constraints. -
Introduction Vocabulary an Excerpt of a Dbpedia Dataset
D2K Master Information Integration Université Paris Saclay Practical session (2): SPARQL Sources: http://liris.cnrs.fr/~pchampin/2015/udos/tuto/#id1 https://www.w3.org/TR/2013/REC-sparql11-query-20130321/ Introduction For this practical session, we will use the DBPedia SPARQL access point, and to access it, we will use the Yasgui online client. By default, Yasgui (http://yasgui.org/) is configured to query DBPedia (http://wiki.dbpedia.org/), which is appropriate for our tutorial, but keep in mind that: - Yasgui is not linked to DBpedia, it can be used with any SPARQL access point; - DBPedia is not related to Yasgui, it can be queried with any SPARQL compliant client (in fact any HTTP client that is not very configurable). Vocabulary An excerpt of a dbpedia dataset The vocabulary of DBPedia is very large, but in this tutorial we will only need the IRIs below. foaf:name Propriété Nom d’une personne (entre autre) dbo:birthDate Propriété Date de naissance d’une personne dbo:birthPlace Propriété Lieu de naissance d’une personne dbo:deathDate Propriété Date de décès d’une personne dbo:deathPlace Propriété Lieu de décès d’une personne dbo:country Propriété Pays auquel un lieu appartient dbo:mayor Propriété Maire d’une ville dbr:Digne-les-Bains Instance La ville de Digne les bains dbr:France Instance La France -1- /!\ Warning: IRIs are case-sensitive. Exercises 1. Display the IRIs of all Dignois of origin (people born in Digne-les-Bains) Graph Pattern Answer: PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX owl: <http://www.w3.org/2002/07/owl#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX foaf: <http://xmlns.com/foaf/0.1/> PREFIX skos: <http://www.w3.org/2004/02/skos/core#> PREFIX dc: <http://purl.org/dc/elements/1.1/> PREFIX dbo: <http://dbpedia.org/ontology/> PREFIX dbr: <http://dbpedia.org/resource/> PREFIX db: <http://dbpedia.org/> SELECT * WHERE { ?p dbo:birthPlace dbr:Digne-les-Bains . -
The Opencitations Data Model
The OpenCitations Data Model Marilena Daquino1;2[0000−0002−1113−7550], Silvio Peroni1;2[0000−0003−0530−4305], David Shotton2;3[0000−0001−5506−523X], Giovanni Colavizza4[0000−0002−9806−084X], Behnam Ghavimi5[0000−0002−4627−5371], Anne Lauscher6[0000−0001−8590−9827], Philipp Mayr5[0000−0002−6656−1658], Matteo Romanello7[0000−0002−7406−6286], and Philipp Zumstein8[0000−0002−6485−9434]? 1 Digital Humanities Advanced research Centre (/DH.arc), Department of Classical Philology and Italian Studies, University of Bologna fmarilena.daquino2,[email protected] 2 Research Centre for Open Scholarly Metadata, Department of Classical Philology and Italian Studies, University of Bologna 3 Oxford e-Research Centre, University of Oxford [email protected] 4 Institute for Logic, Language and Computation (ILLC), University of Amsterdam [email protected] 5 Department of Knowledge Technologies for the Social Sciences, GESIS - Leibniz-Institute for the Social Sciences [email protected], [email protected] 6 Data and Web Science Group, University of Mannheim [email protected] 7 cole Polytechnique Fdrale de Lausanne [email protected] 8 Mannheim University Library, University of Mannheim [email protected] Abstract. A variety of schemas and ontologies are currently used for the machine-readable description of bibliographic entities and citations. This diversity, and the reuse of the same ontology terms with differ- ent nuances, generates inconsistencies in data. Adoption of a single data model would facilitate data integration tasks regardless of the data sup- plier or context application. In this paper we present the OpenCitations Data Model (OCDM), a generic data model for describing bibliographic entities and citations, developed using Semantic Web technologies.