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Lactococcus Piscium : a Psychotrophic Lactic Acid Bacterium with Bioprotective Or Spoilage Activity in Food - a Review
1 Journal of Applied Microbiology Achimer October 2016, Volume 121, Issue 4, Pages 907-918 http://dx.doi.org/10.1111/jam.13179 http://archimer.ifremer.fr http://archimer.ifremer.fr/doc/00334/44517/ © 2016 The Society for Applied Microbiology Lactococcus piscium : a psychotrophic lactic acid bacterium with bioprotective or spoilage activity in food - a review Saraoui Taous 1, 2, 3, Leroi Francoise 1, * , Björkroth Johanna 4, Pilet Marie France 2, 3 1 Ifremer, Laboratoire Ecosystèmes Microbiens et Molécules Marines pour les Biotechnologies (EM3 B),; Rue de l'Ile d'Yeu 44311 Nantes Cedex 03, France 2 LUNAM Université, Oniris; UMR1014 Secalim, Site de la Chantrerie; F-44307 Nantes, France 3 INRA; F-44307 Nantes ,France 4 University of Helsinki; Department of Food Hygiene and Environmental Health; Helsinki ,Finland * Corresponding author : Françoise Leroi, tel.: +33240374172; fax: +33240374071 ; email address : [email protected] Abstract : The genus Lactococcus comprises twelve species, some known for decades and others more recently described. Lactococcus piscium, isolated in 1990 from rainbow trout, is a psychrotrophic lactic acid bacterium (LAB), probably disregarded because most of the strains are unable to grow at 30°C. During the last 10 years, this species has been isolated from a large variety of food: meat, seafood and vegetables, mostly packed under vacuum (VP) or modified atmosphere (MAP) and stored at chilled temperature. Recently, culture-independent techniques used for characterization of microbial ecosystems have highlighted the importance of L. piscium in food. Its role in food spoilage varies according to the strain and the food matrix. However, most studies have indicated that L. -
A Taxonomic Note on the Genus Lactobacillus
Taxonomic Description template 1 A taxonomic note on the genus Lactobacillus: 2 Description of 23 novel genera, emended description 3 of the genus Lactobacillus Beijerinck 1901, and union 4 of Lactobacillaceae and Leuconostocaceae 5 Jinshui Zheng1, $, Stijn Wittouck2, $, Elisa Salvetti3, $, Charles M.A.P. Franz4, Hugh M.B. Harris5, Paola 6 Mattarelli6, Paul W. O’Toole5, Bruno Pot7, Peter Vandamme8, Jens Walter9, 10, Koichi Watanabe11, 12, 7 Sander Wuyts2, Giovanna E. Felis3, #*, Michael G. Gänzle9, 13#*, Sarah Lebeer2 # 8 '© [Jinshui Zheng, Stijn Wittouck, Elisa Salvetti, Charles M.A.P. Franz, Hugh M.B. Harris, Paola 9 Mattarelli, Paul W. O’Toole, Bruno Pot, Peter Vandamme, Jens Walter, Koichi Watanabe, Sander 10 Wuyts, Giovanna E. Felis, Michael G. Gänzle, Sarah Lebeer]. 11 The definitive peer reviewed, edited version of this article is published in International Journal of 12 Systematic and Evolutionary Microbiology, https://doi.org/10.1099/ijsem.0.004107 13 1Huazhong Agricultural University, State Key Laboratory of Agricultural Microbiology, Hubei Key 14 Laboratory of Agricultural Bioinformatics, Wuhan, Hubei, P.R. China. 15 2Research Group Environmental Ecology and Applied Microbiology, Department of Bioscience 16 Engineering, University of Antwerp, Antwerp, Belgium 17 3 Dept. of Biotechnology, University of Verona, Verona, Italy 18 4 Max Rubner‐Institut, Department of Microbiology and Biotechnology, Kiel, Germany 19 5 School of Microbiology & APC Microbiome Ireland, University College Cork, Co. Cork, Ireland 20 6 University of Bologna, Dept. of Agricultural and Food Sciences, Bologna, Italy 21 7 Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Vrije Universiteit 22 Brussel, Brussels, Belgium 23 8 Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, 24 Belgium 25 9 Department of Agricultural, Food & Nutritional Science, University of Alberta, Edmonton, Canada 26 10 Department of Biological Sciences, University of Alberta, Edmonton, Canada 27 11 National Taiwan University, Dept. -
Microbial Community Dynamics In
Microbial community dynamics in traditionally fermented milk PhD thesis Anneloes E Groenenboom Wageningen University and Research 2 Table of contents Chapter 1. Introduction 5 Chapter 2. Microbial communities from spontaneously fermented foods as model system to study eco-evolutionary dynamics 13 Chapter 3. Robust sampling and preservation of DNA for microbial community profiling in field experiments 25 Chapter 4. Microbial population dynamics during traditional production of Mabisi, a spontaneously fermented milk product from Zambia. A field trial. 33 Chapter 5. Does change in bacterial species composition of natural communities reflect adaptation to a new environment? 49 Chapter 6. Bacterial community dynamics in Lait caillé, a traditional product of spontaneous fermentation from Senegal. 65 Chapter 7. General discussion 79 Summary 91 References 95 3 4 1. Introduction This thesis is about Mabisi. In the western world, and maybe anywhere but Zambia, Mabisi is an unknown product. In this country in the middle of Africa, however, Mabisi is a phenomenon; a widely appreciated fermented milk product, which is consumed almost daily by men, women, and children from a very young age. What makes this fermented milk so interesting that I studied it for four years? It is the diversity we find in the bacterial communities that make Mabisi. This PhD thesis is part of a larger project funded by NWO WOTRO on enhancing nutrition security though traditional fermented products (1). In this thesis I would like to show the microbial communities that are responsible for the fermentation and how we can use the constituting bacteria to learn about bacterial community dynamics over time. -
Evaluation of Commercially Available Probiotic Products Intended for Children in the Republic of the Philippines and the Republic of Korea
foods Article Do Your Kids Get What You Paid for? Evaluation of Commercially Available Probiotic Products Intended for Children in the Republic of the Philippines and the Republic of Korea Clarizza May Dioso 1,2, Pierangeli Vital 3, Karina Arellano 2, Haryung Park 2,4, Svetoslav Dimitrov Todorov 2, Yosep Ji 4 and Wilhelm Holzapfel 2,4,* 1 Institute of Biology, College of Science, University of the Philippines Diliman, Quezon City 1101, Philippines; [email protected] 2 Advanced Green Energy and Environment Department, Handong Global University, Pohang, Gyungbuk 37554, Korea; [email protected] (K.A.); [email protected] (H.P.); [email protected] (S.D.T.) 3 Natural Sciences Research Institute, University of the Philippines Diliman, Quezon City 1101, Philippines; [email protected] 4 HEM Inc., Business Incubator, Handong Global University, Pohang, Gyungbuk 37554, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-20-8455-1360 Received: 11 August 2020; Accepted: 31 August 2020; Published: 3 September 2020 Abstract: A wide range of probiotic products is available on the market and can be easily purchased over the counter and unlike pharmaceutical drugs, their commercial distribution is not strictly regulated. In this study, ten probiotic preparations commercially available for children’s consumption in the Republic of the Philippines (PH) and the Republic of Korea (SK) have been investigated. The analyses included determination of viable counts and taxonomic identification of the bacterial species present in each formulation. The status of each product was assessed by comparing the results with information and claims provided on the label. In addition to their molecular identification, safety assessment of the isolated strains was conducted by testing for hemolysis, biogenic amine production and antibiotic resistance. -
Health Canada's Proposal to Enable the Use of Leuconostoc Carnosum
Health Canada’s Proposal to Enable the Use of Leuconostoc carnosum 4010 as an Antimicrobial Preservative in Certain Vacuum-Packed Non-Shelf-Stable Meat and Poultry Products Health Canada’s Proposal to Enable the Use of Leuconostoc carnosum 4010 as an Antimicrobial Preservative in Certain Vacuum-Packed Non-Shelf-Stable Meat and Poultry Products Notice of Proposal – Lists of Permitted Food Additives Reference Number: [NOP/AVP-0016] April 12, 2016 Bureau of Chemical Safety, Food Directorate, Health Products and Food Branch 1 Health Canada’s Proposal to Enable the Use of Leuconostoc carnosum 4010 as an Antimicrobial Preservative in Certain Vacuum-Packed Non-Shelf-Stable Meat and Poultry Products Summary Food additives are regulated in Canada under Marketing Authorizations (MAs) issued by the Minister of Health and the Food and Drug Regulations. Approved food additives and their permitted conditions of use are set out in the Lists of Permitted Food Additives that are incorporated by reference in the MAs and published on Health Canada’s website. A petitioner can request that Health Canada approve a new additive or a new condition of use for an already approved food additive by filing a food additive submission with the Department's Food Directorate. Health Canada uses this premarket approval process to determine whether the scientific data support the safety of food additives when used under specified conditions in foods sold in Canada. Health Canada received a food additive submission seeking approval for the use of the bacterium Leuconostoc carnosum 4010 as an antimicrobial preservative at a maximum level of use consistent with Good Manufacturing Practice in certain vacuum-packed non-shelf-stable meat and poultry products, namely: bologna, cervelat, frankfurters, mortadella, and wieners. -
Kocuria (Micrococcus) and Cultivation Methods for Their Detection – Part 1
Kvasny Prum. 10 64 / 2018 (1) Brewing Microbiology – Kocuria (Micrococcus) and Cultivation Methods for their Detection – Part 1 DOI: 10.18832/kp201804 Brewing Microbiology – Kocuria (Micrococcus) and Cultivation Methods for their Detection – Part 1 Mikrobiologie pivovarské výroby – bakterie Kocuria (Micrococcus) a kultivační metody pro jejich detekci – 1. část Dagmar MATOULKOVÁ, Petra KUBIZNIAKOVÁ Mikrobiologické oddělení, Výzkumný ústav pivovarský a sladařský, a.s., / Department of Microbiology, Research Institute of Brewing and Malting, PLC, Lípová 15, 120 44 Prague, e-mail: [email protected], [email protected] Recenzovaný článek / Reviewed Paper Matoulková, D., Kubizniaková, P., 2018: Brewing microbiology – Kocuria (Micrococcus) and cultivation methods for their detection – Part 1. Kvasny Prum. 64(1): 10–13 Signifi cant brewery species of micrococcus were reclassifi ed to the genus Kocuria: Kocuria kristinae (previously Micrococcus kristinae) and Kocuria varians (previously Micrococcus varians). Bacteria of genus Kocuria belong to less risky microbial contaminants of beer and brewery plant. Species Kocuria kristinae may exceptionally cause beer spoilage. Signifi cant is their misplacement for pediococci. Here we present an overview of basic morphological and physiological properties of Kocuria (Micrococcus) species and describe their harmfulness in the brewing process. Matoulková, D., Kubizniaková, P., 2018: Mikrobiologie pivovarské výroby – bakterie Kocuria (Micrococcus) a kultivační metody pro jejich detekci – 1. část. Kvasny Prum. 64(1): 10–13 Pivovarsky významné druhy mikrokoků byly reklasifi kovány do rodu Kocuria: Kocuria kristinae (dříve Micrococcus kristinae) a Kocuria varians (dříve Micrococcus varians). Bakterie rodu Kocuria patří k méně rizikovým mikrobiálním kontaminacím piva a pivovarského pro- vozu. Výjimečně může být druh Kocuria kristinae původcem kažení piva. Význam těchto bakterií spočívá zejména v možnosti záměny s pediokoky. -
Biological and Chemical Diversity of Bacteria Associated with a Marine Flatworm
Article Biological and Chemical Diversity of Bacteria Associated with a Marine Flatworm Hui-Na Lin 1,2,†, Kai-Ling Wang 1,3,†, Ze-Hong Wu 4,5, Ren-Mao Tian 6, Guo-Zhu Liu 7 and Ying Xu 1,* 1 Shenzhen Key Laboratory of Marine Bioresource & Eco-Environmental Science, Shenzhen Engineering Laboratory for Marine Algal Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China; [email protected] (H.-N.L.); [email protected] (K.-L.W.) 2 School of Life Sciences, Xiamen University, Xiamen 361102, China 3 Key Laboratory of Marine Drugs, Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China 4 The Eighth Affiliated Hospital, Sun Yat-sen University, Shenzhen 518033, China; [email protected] 5 Integrated Chinese and Western Medicine Postdoctoral Research Station, Jinan University, Guangzhou 510632, China 6 Division of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong SAR, China; [email protected] 7 HEC Research and Development Center, HEC Pharm Group, Dongguan 523871, China; [email protected] * Correspondence: [email protected]; Tel.: +86-755-26958849; Fax: +86-755-26534274 † These authors contributed equally to this work. Received: 20 July 2017; Accepted: 29 August 2017; Published: 1 September 2017 Abstract: The aim of this research is to explore the biological and chemical diversity of bacteria associated with a marine flatworm Paraplanocera sp., and to discover the bioactive metabolites from culturable strains. A total of 141 strains of bacteria including 45 strains of actinomycetes and 96 strains of other bacteria were isolated, identified and fermented on a small scale. -
Studies on Antibacterial Activity and Diversity of Cultivable Actinobacteria Isolated from Mangrove Soil in Futian and Maoweihai of China
Hindawi Evidence-Based Complementary and Alternative Medicine Volume 2019, Article ID 3476567, 11 pages https://doi.org/10.1155/2019/3476567 Research Article Studies on Antibacterial Activity and Diversity of Cultivable Actinobacteria Isolated from Mangrove Soil in Futian and Maoweihai of China Feina Li,1 Shaowei Liu,1 Qinpei Lu,1 Hongyun Zheng,1,2 Ilya A. Osterman,3,4 Dmitry A. Lukyanov,3 Petr V. Sergiev,3,4 Olga A. Dontsova,3,4,5 Shuangshuang Liu,6 Jingjing Ye,1,2 Dalin Huang ,2 and Chenghang Sun 1 1 Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, China 2College of Basic Medical Sciences, Guilin Medical University, Guilin 541004, China 3Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow 143025, Russia 4Department of Chemistry, A.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia 5Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Te Russian Academy of Sciences, Moscow 117997, Russia 6China Pharmaceutical University, Nanjing 210009, China Correspondence should be addressed to Dalin Huang; [email protected] and Chenghang Sun; [email protected] Received 29 March 2019; Accepted 21 May 2019; Published 9 June 2019 Guest Editor: Jayanta Kumar Patra Copyright © 2019 Feina Li et al. Tis is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Mangrove is a rich and underexploited ecosystem with great microbial diversity for discovery of novel and chemically diverse antimicrobial compounds. Te goal of the study was to explore the pharmaceutical actinobacterial resources from mangrove soil and gain insight into the diversity and novelty of cultivable actinobacteria. -
Longitudinal Metatranscriptomic Analysis of a Meat Spoilage Microbiome Detects Abundant
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.13.250449; this version posted August 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Longitudinal metatranscriptomic analysis of a meat spoilage microbiome detects abundant 2 continued fermentation and environmental stress responses during shelf life and beyond. 3 4 5 Running title: Longitudinal analysis of a meat spoilage microbiome 6 7 Jenni Hultman1,2, Per Johansson1, Johanna Björkroth1* 8 1Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University 9 of Helsinki, Agnes Sjöbergin katu 2, 00014 Helsinki University, Finland 10 * Corresponding author 11 2 Current affiliation: Department of Microbiology, University of Helsinki, Finland 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.08.13.250449; this version posted August 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 12 Abstract 13 Microbial food spoilage is a complex phenomenon associated with the succession of the specific 14 spoilage organisms (SSO) over the course of time. We performed a longitudinal metatranscriptomic 15 study on a modified atmosphere packaged (MAP) beef product to increase understanding of the 16 longitudinal behavior of a spoilage microbiome during shelf life and onward. Based on the annotation 17 of the mRNA reads, we recognized three stages related to the active microbiome that were descriptive 18 for the sensory quality of the beef: acceptable product (AP), early spoilage (ES) and late spoilage 19 (LS). -
Food Microbiology Changes in the Microbial Communities in Vacuum
Food Microbiology 77 (2019) 26–37 Contents lists available at ScienceDirect Food Microbiology journal homepage: www.elsevier.com/locate/fm Changes in the microbial communities in vacuum-packaged smoked bacon during storage T ∗ Xinfu Lia,b,d, Cong Lia,b,d, Hua Yea,b, Zhouping Wanga,b, Xiang Wud, Yanqing Hand, Baocai Xub,c,d, a State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, China b School of Food Science and Technology, Jiangnan University, Wuxi, 214122, China c School of Food Science and Engineering, Hefei University of Technology, Hefei, 230009, China d State Key Laboratory of Meat Processing and Quality Control, Yurun Group, Nanjing, 211806, China ARTICLE INFO ABSTRACT Keywords: This study aimed to gain deeper insights into the microbiota composition and population dynamics, monitor the Microbial communities dominant bacterial populations and identify the specific spoilage microorganisms (SSOs) of vacuum-packed Smoked bacon bacon during refrigerated storage using both culture-independent and dependent methods. High-throughout High-throughput sequencing (HTS) sequencing (HTS) showed that the microbial composition changed greatly with the prolongation of storage time. The diversity of microbiota was abundant at the initial stage then experienced a continuous decrease. Lactic acid bacteria (LAB) mainly Leuconostoc and Lactobacillus dominated the microbial population after seven days of storage. A total of 26 isolates were identified from different growth media using traditional cultivation isolation and identification method. Leuconostoc mesenteroides and Leuconostoc carnosum were the most prevalent species since day 15, while Lactobacillus sakei and Lactobacillus curvatus were only found on day 45, suggesting that they could be responsible for the spoilage of bacon. -
Brevibacterium Sandarakinum Sp. Nov., Isolated from a Wall of an Indoor Environment
This is an author manuscript that has been accepted for publication in International Journal of Systematic and Evolutionary Microbiology, copyright Society for General Microbiology, but has not been copy-edited, formatted or proofed. Cite this article as appearing in International Journal of Systematic and Evolutionary Microbiology. This version of the manuscript may not be duplicated or reproduced, other than for personal use or within the rule of ‘Fair Use of Copyrighted Materials’ (section 17, Title 17, US Code), without permission from the copyright owner, Society for General Microbiology. The View metadata, citation and similar papers at core.ac.uk brought to you by CORE Society for General Microbiology disclaims any responsibility or liability for errors or omissions in this version of the manuscript or in any version derived from it by any other parties. The final copy-edited, published article, which is the version of record, can be found at http://ijs.sgmjournals.org,provided by Giessener Elektronische and is freely Bibliothek available without a subscription 24 months after publication. First published in: Int J Syst Evol Microbiol, 2009. 60(4) 909-913. doi:10.1099/ijs.0.014100-0 Brevibacterium sandarakinum sp. nov., isolated from a wall of an indoor environment Peter Ka¨mpfer,1 Jenny Scha¨fer,1 Nicole Lodders1 and Hans-Ju¨rgen Busse2 Correspondence 1Institut fu¨r Angewandte Mikrobiologie, Justus-Liebig-Universita¨t Giessen, D-35392 Giessen, Peter Ka¨mpfer Germany [email protected] 2Institut fu¨r Bakteriologie, Mykologie und Hygiene, Veterina¨rmedizinische Universita¨t, A-1210 Wien, giessen.de Austria A Gram-stain-positive, rod-shaped, non-endospore-forming, orange-pigmented (coloured) actinobacterium (01-Je-003T) was isolated from the wall of an indoor environment primarily colonized with moulds. -
Characterization of Pasteurized Fluid Milk Shelf-Life Attributes H.I
JFS M: Food Microbiology and Safety Characterization of Pasteurized Fluid Milk Shelf-life Attributes H.I. FROMM AND K.J. BOOR ABSTRACT: Pasteurized fluid milk samples were systematically collected from 3 commercial dairy plants. Samples were evaluated for microbial, chemical, and sensory attributes throughout shelf life. In general, product shelf lives were limited by multiplication of heat-resistant psychrotrophic organisms that caused undesirable flavors in milk. The predominant microorganisms identified were Gram-positive rods including Paenibacillus, Bacillus, and Mi- crobacterium. Principal component analysis of sensory data collected using quantitative descriptive analysis showed that attributes related to milk flavor defects explained the largest amount of variance. These findings highlight the need to develop specific strategies for excluding bacterial contaminants from milk to further extend product shelf lives. Keywords: shelf life, fluid milk, spoilage, quantitative descriptive analysis, principal component analysis Introduction teurization contamination has been controlled and longer product er capita consumption of fluid milk in the United States has shelf lives are expected (Champagne and others 1994; Ralyea and Pdecreased steadily over the past 30 years (ERS/USDA 2001). others 1998). These Gram-positive organisms can be present in raw Highly perishable fluid milk products must compete in the market- milk, but they also may enter milk products at various points during place against shelf-stable beverages that have captured a large pro- production and processing (Griffiths and Phillips 1990; Schraft and portion of the beverage market in recent years (IDFA 2003). Extend- others 1996; Svensson and others 1999). Further extension of prod- ing fluid milk shelf life may enable processors to maintain a uct shelf lives will require elimination of these heat-resistant, Gram- competitive position in the beverage market by facilitating the pro- positive contaminants.