Theranostics the PSMD14 Inhibitor Thiolutin As a Novel Therapeutic
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Genetic Variations in the PSMA6 and PSMC6 Proteasome Genes Are Associated with Multiple Sclerosis and Response to Interferon‑Β Therapy in Latvians
EXPERIMENTAL AND THERAPEUTIC MEDICINE 21: 478, 2021 Genetic variations in the PSMA6 and PSMC6 proteasome genes are associated with multiple sclerosis and response to interferon‑β therapy in Latvians NATALIA PARAMONOVA1, JOLANTA KALNINA1, KRISTINE DOKANE1, KRISTINE DISLERE1, ILVA TRAPINA1, TATJANA SJAKSTE1 and NIKOLAJS SJAKSTE1,2 1Genomics and Bioinformatics, Institute of Biology of The University of Latvia; 2Department of Medical Biochemistry of The University of Latvia, LV‑1004 Riga, Latvia Received July 8, 2020; Accepted December 8, 2020 DOI: 10.3892/etm.2021.9909 Abstract. Several polymorphisms in genes related to the Introduction ubiquitin‑proteasome system exhibit an association with pathogenesis and prognosis of various human autoimmune Multiple sclerosis (MS) is a lifelong demyelinating disease of diseases. Our previous study reported the association the central nervous system. The clinical onset of MS tends to between multiple sclerosis (MS) and the PSMA3‑rs2348071 be between the second and fourth decade of life. Similarly to polymorphism in the Latvian population. The current study other autoimmune diseases, women are affected 3‑4 times more aimed to evaluate the PSMA6 and PSMC6 genetic variations, frequently than men (1). About 10% of MS patients experience their interaction between each other and with the rs2348071, a primary progressive MS form characterized by the progres‑ on the susceptibility to MS risk and response to therapy in sion of neurological disability from the onset. In about 90% the Latvian population. PSMA6‑rs2277460, ‑rs1048990 and of MS patients, the disease undergoes the relapse‑remitting PSMC6‑rs2295826, ‑rs2295827 were genotyped in the MS MS course (RRMS); in most of these patients, the condition case/control study and analysed in terms of genotype‑protein acquires secondary progressive course (SPMS) (2). -
Deubiquitinases in Cancer: New Functions and Therapeutic Options
Oncogene (2012) 31, 2373–2388 & 2012 Macmillan Publishers Limited All rights reserved 0950-9232/12 www.nature.com/onc REVIEW Deubiquitinases in cancer: new functions and therapeutic options JM Fraile1, V Quesada1, D Rodrı´guez, JMP Freije and C Lo´pez-Otı´n Departamento de Bioquı´mica y Biologı´a Molecular, Facultad de Medicina, Instituto Universitario de Oncologı´a, Universidad de Oviedo, Oviedo, Spain Deubiquitinases (DUBs) have fundamental roles in the Hunter, 2010). Consistent with the functional relevance ubiquitin system through their ability to specifically of proteases in these processes, alterations in their deconjugate ubiquitin from targeted proteins. The human structure or in the mechanisms controlling their genome encodes at least 98 DUBs, which can be grouped spatiotemporal expression patterns and activities cause into 6 families, reflecting the need for specificity in diverse pathologies such as arthritis, neurodegenerative their function. The activity of these enzymes affects the alterations, cardiovascular diseases and cancer. Accord- turnover rate, activation, recycling and localization ingly, many proteases are an important focus of of multiple proteins, which in turn is essential for attention for the pharmaceutical industry either as drug cell homeostasis, protein stability and a wide range of targets or as diagnostic and prognostic biomarkers signaling pathways. Consistent with this, altered DUB (Turk, 2006; Drag and Salvesen, 2010). function has been related to several diseases, including The recent availability of the genome sequence cancer. Thus, multiple DUBs have been classified as of different organisms has facilitated the identification oncogenes or tumor suppressors because of their regula- of their entire protease repertoire, which has been tory functions on the activity of other proteins involved in defined as degradome (Lopez-Otin and Overall, 2002). -
Tgfβ-Activated USP27X Deubiquitinase Regulates Cell Migration And
Author Manuscript Published OnlineFirst on October 19, 2018; DOI: 10.1158/0008-5472.CAN-18-0753 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. 1 TGFβ-activated USP27X deubiquitinase regulates cell migration and 2 chemoresistance via stabilization of Snail1 3 4 Guillem Lambies1,2, Martina Miceli1, Catalina Martínez-Guillamon1, Rubén 5 Olivera-Salguero1, Raúl Peña1, Carolina-Paola Frías1, Irene Calderón1, Boyko S. 6 Atanassov3, Sharon Y. R. Dent4, Joaquín Arribas5,6,7, Antonio García de 7 Herreros1,2*, and Víctor M. Díaz1,2*. 8 1 9 Programa de Recerca en Càncer, Institut Hospital del Mar d’Investigacions Mèdiques 10 (IMIM), Unidad Asociada CSIC, Barcelona, Spain. 2 11 Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra 12 (UPF), Barcelona, Spain. 3 13 Department of Pharmacology & Therapeutics, Roswell Park Comprehensive Cancer 14 Center, Buffalo, NY 15 4 Department of Epigenetics and Molecular Carcinogenesis, Center for Cancer 16 Epigenetics, University of Texas M.D. Anderson Cancer Center, Smithville, Texas 17 5 Preclinical Research Program, Vall d’Hebron Institute of Oncology (VHIO) 18 CIBERONC, Barcelona, Spain 19 6 Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain 20 7 Department of Biochemistry and Molecular Biology, Universitat Autònoma de 21 Barcelona, Campus de la UAB, Bellaterra, Spain 22 23 Running title: USP27X deubiquitinates Snail1 in tumor cells. 24 1 Downloaded from cancerres.aacrjournals.org on October 5, 2021. © 2018 American Association for Cancer Research. Author Manuscript Published OnlineFirst on October 19, 2018; DOI: 10.1158/0008-5472.CAN-18-0753 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. -
NPI-0052 and Γ-Radiation Induce a Synergistic Apoptotic Effect In
Frisira et al. Cell Death and Disease (2019) 10:785 https://doi.org/10.1038/s41419-019-2026-y Cell Death & Disease ARTICLE Open Access NPI-0052 and γ-radiation induce a synergistic apoptoticeffectinmedulloblastoma Eleni Frisira1, Fatima Rashid1,SwastinaNathVarma2,SaraBadodi1, Valentine Ayodele Benjamin-Ombo1, David Michod 2 and Maria Victoria Niklison-Chirou 1 Abstract Medulloblastoma (MB) is the most common malignant solid paediatric brain tumour. The standard treatment for MB is surgical resection of the tumour, radiation and chemotherapy. This therapy is associated with high morbidity and adverse side effects. Hence, more targeted and less toxic therapies are vitally needed to improve the quality of life of survivors. NPI-0052 is a novel proteasome inhibitor that irreversibly binds the 20S proteasome subunit. This compound has anti-tumour activity in metastatic solid tumours, glioblastoma and multiple myeloma with a good safety profile. Importantly, NPI-0052 has a lipophilic structure and can penetrate the blood–brain barrier, making it a suitable treatment for brain tumours. In the present study, we performed an in silico gene expression analysis to evaluate the proteasome subunit expression in MB. To evaluate the anticancer activity of NPI-0052, we used a range of MB patient- derived MB cells and cell lines. The synergistic cell death of NPI-0052 with γ-radiation was evaluated in tumour organoids derived from patient-derived MB cells. We show that high expression of proteasome subunits is a poor prognostic factor for MB patients. Also, our preclinical work demonstrated that NPI-0052 can inhibit proteasome activity and activate apoptosis in MB cells. Moreover, we observe that NPI-0052 has a synergistic apoptotic effect with γ-radiation, a component of the current MB therapy. -
PSMD14 Is Over-Expressed in Human Endometrial Cancer
Over-expression of proteasome 26S subunit, non-ATPase 14 in human endometrial cancer. Shahan Mamoor, MS1 [email protected] East Islip, NY USA Gynecologic cancers including cancers of the endometrium are a clinical problem1-4. We mined published microarray data5,6 to discover genes associated with endometrial cancers by comparing transcriptomes of the normal and hyperplastic endometrium to endometrial tumors from humans. We identified proteasome 26S subunit, non-ATPase 14, encoded by PSMD14, as among the most differentially expressed genes, transcriptome-wide, in cancers of the endometrium. PSMD14 was expressed at significantly higher levels in endometrial tumor tissues as compared to the endometrium. Importantly, in human endometrial cancer, primary tumor expression of PSMD14 was correlated with overall survival in white patients with low mutational burden. PSMD14 may be a molecule of interest in understanding the etiology or progression of human endometrial cancer. Keywords: endometrial cancer, gynecologic cancers, endometrium, PSMD14, proteasome 26S subunit, non-ATPase 14, systems biology of endometrial cancer, targeted therapeutics in endometrial cancer. 1 Endometrial cancer is the most common gynecologic cancer in the developed world1. Over the last three decades, the incidence of endometrial cancer has increased 21%4 and the death rate has increased 100%3. We harnessed the power of independently published microarray datasets5,6 to determine in an unbiased fashion and at the systems-level genes most differentially expressed in endometrial tumors. We report here the differential and increased expression of the proteasome 26S subunit, non-ATPase 14 (PSMD14) in human endometrial cancer. Methods We utilized datasets GSE636785 and GSE1061916 for this global differential gene expression analysis of human endometrial cancer in conjunction with GEO2R. -
NATURAL KILLER CELLS, HYPOXIA, and EPIGENETIC REGULATION of HEMOCHORIAL PLACENTATION by Damayanti Chakraborty Submitted to the G
NATURAL KILLER CELLS, HYPOXIA, AND EPIGENETIC REGULATION OF HEMOCHORIAL PLACENTATION BY Damayanti Chakraborty Submitted to the graduate degree program in Pathology and Laboratory Medicine and the Graduate Faculty of the University of Kansas in partial fulfillment ofthe requirements for the degree of Doctor of Philosophy. ________________________________ Chair: Michael J. Soares, Ph.D. ________________________________ Jay Vivian, Ph.D. ________________________________ Patrick Fields, Ph.D. ________________________________ Soumen Paul, Ph.D. ________________________________ Michael Wolfe, Ph.D. ________________________________ Adam J. Krieg, Ph.D. Date Defended: 04/01/2013 The Dissertation Committee for Damayanti Chakraborty certifies that this is the approved version of the following dissertation: NATURAL KILLER CELLS, HYPOXIA, AND EPIGENETIC REGULATION OF HEMOCHORIAL PLACENTATION ________________________________ Chair: Michael J. Soares, Ph.D. Date approved: 04/01/2013 ii ABSTRACT During the establishment of pregnancy, uterine stromal cells differentiate into decidual cells and recruit natural killer (NK) cells. These NK cells are characterized by low cytotoxicity and distinct cytokine production. In rodent as well as in human pregnancy, the uterine NK cells peak in number around mid-gestation after which they decline. NK cells associate with uterine spiral arteries and are implicated in pregnancy associated vascular remodeling processes and potentially in modulating trophoblast invasion. Failure of trophoblast invasion and vascular remodeling has been shown to be associated with pathological conditions like preeclampsia syndrome, hypertension in mother and/or fetal growth restriction. We hypothesize that NK cells fundamentally contribute to the organization of the placentation site. In order to study the in vivo role of NK cells during pregnancy, gestation stage- specific NK cell depletion was performed in rats using anti asialo GM1 antibodies. -
Low Dose and Low Dose-Rate Radiation Effects and Models
Forty-Fourth Annual Meeting Program Low Dose and Low Dose-Rate Radiation Effects and Models April 14–15, 2008 Bethesda North Marriott Hotel & Conference Center 5701 Marinelli Road North Bethesda, MD 20852 On the cover: • top: Two nuclei have each been “hit” by three alpha particles from a microbeam and show activated γH2AX foci at the site of the traversal. • center: Chromosome painting technology makes it possible to identify each human chromosome and characterize the number, location and types of aberrations produced by ionizing radiation. • bottom: Measuring the frequency of micronuclei provides a rapid measure of cytogenetic damage, which increases as a function of radiation dose. Introduction Low Dose and Low Dose-Rate Radiation Effects and Models Forty-Fourth Annual Meeting of the National Council on Radiation Protection and Measurements (NCRP) Potential human health effects of low doses of ionizing models of the biological responses and human health radiation such as those experienced in occupational impacts of exposure to low doses of radiation. The and medical exposures are of great contemporary meeting will feature presentations by international interest. Considerable debate exists over the applica- experts on the topics of (1) molecular, cellular, tissue, bility of a linear-nonthreshold model for characterizing and laboratory animal studies on the effects of expo- the biological responses and health effects of expo- sure to low dose and low dose-rate radiation, (2) sure to low radiation doses, and alternative models results of epidemiological studies on human health have been proposed. A related subject of interest and effects of low radiation doses in occupational, medical debate is the effect of the rate of delivery of radiation and other exposure scenarios, (3) potential impacts of doses on the biological and health outcomes of expo- these findings on future regulatory guidance and pub- sure. -
The Proteasomal Deubiquitinating Enzyme PSMD14 Regulates 2 Macroautophagy by Controlling Golgi-To-ER Retrograde Transport
bioRxiv preprint doi: https://doi.org/10.1101/2020.01.29.925503; this version posted January 31, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 The proteasomal deubiquitinating enzyme PSMD14 regulates 2 macroautophagy by controlling Golgi-to-ER retrograde transport 3 Bustamante HA1,2, Cereceda K3, González AE1,4, Valenzuela GE5,6, 4 Cheuquemilla Y6, Hernández S3, Arias-Muñoz E3, Cerda-Troncoso C3, 5 Bandau S8, Soza A3, Kausel G5, Kerr B3, Mardones GA1,7, Cancino J3, Hay 6 RT8, Rojas-Fernandez A6,8¥, Burgos PV3,9¥ 7 1Instituto de Fisiología, Facultad de Medicina, Universidad Austral de Chile, 5110566, Valdivia, Chile 8 2Instituto de Microbiología Clínica, Facultad de Medicina, Universidad Austral de Chile, 5110566, Valdivia, 9 Chile 10 3Centro de Biología Celular y Biomedicina (CEBICEM), Facultad de Medicina y Ciencia, Universidad San 11 Sebastián, Lota 2465, 7510157, Santiago, Chile 12 4Institute of Biochemistry II, School of Medicine, Goethe University Frankfurt, Theoder-Stern-Kai 7, 60590, 13 Frankfurt am Main, Germany 14 5Instituto de Bioquímica y Microbiología, Facultad de Ciencias, Universidad Austral de Chile, 5110566, 15 Valdivia, Chile. 16 6Instituto de Medicina & Centro Interdisciplinario de Estudios del Sistema Nervioso (CISNe), Universidad 17 Austral de Chile, 5110566, Valdivia, Chile. 18 7Centro Interdisciplinario de Estudios del Sistema Nervioso (CISNe), Universidad Austral de Chile, 5110566, 19 Valdivia, Chile. 20 8Centre for Gene Regulation and Expression, College of Life Sciences, University of Dundee, DD1 4HN, 21 Dundee, United Kingdom. -
The Role of Dubs in the Post-Translational Control of Cell Migration
Essays in Biochemistry (2019) 63 579–594 https://doi.org/10.1042/EBC20190022 Review Article The role of DUBs in the post-translational control of cell migration Guillem Lambies1,2, Antonio Garc´ıade Herreros1,2 and V´ıctor M. D´ıaz1,2,3 1Programa de Recerca en Cancer,` Institut Hospital del Mar d’Investigacions Mediques` (IMIM), Unidad Asociada CSIC, Barcelona, Spain; 2Departament de Ciencies` Experimentals i de la Salut, Universitat Pompeu Fabra (UPF), Barcelona, Spain; 3Faculty of Medicine and Health Sciences, International University of Catalonia, Sant Cugat del Valles,` Barcelona, Spain Downloaded from https://portlandpress.com/essaysbiochem/article-pdf/63/5/579/859061/ebc-2019-0022c.pdf by guest on 05 November 2019 Correspondence: V.M. Dıaz´ ([email protected])orA.Garcıa´ de Herreros ([email protected]) Cell migration is a multifactorial/multistep process that requires the concerted action of growth and transcriptional factors, motor proteins, extracellular matrix remodeling and proteases. In this review, we focus on the role of transcription factors modulat- ing Epithelial-to-Mesenchymal Transition (EMT-TFs), a fundamental process supporting both physiological and pathological cell migration. These EMT-TFs (Snail1/2, Twist1/2 and Zeb1/2) are labile proteins which should be stabilized to initiate EMT and provide full mi- gratory and invasive properties. We present here a family of enzymes, the deubiquitinases (DUBs) which have a crucial role in counteracting polyubiquitination and proteasomal degra- dation of EMT-TFs after their induction by TGFβ, inflammatory cytokines and hypoxia. We also describe the DUBs promoting the stabilization of Smads, TGFβ receptors and other key proteins involved in transduction pathways controlling EMT. -
Serpin Peptidase Inhibitor Clade a Member 1 As a Potential Marker for Malignancy in Insulinomas
Human Cancer Biology Serpin Peptidase Inhibitor Clade A Member 1as a Potential Marker for Malignancy in Insulinomas Sandra Vale¤ riadeSa¤ ,1, 2 Maria Lu¤ cia Corre“ a-Giannella,1, 3 Ma¤ rcio Carlos Machado,3 Karin Krogh,4 Madson Queiroz de Almeida, 3 Maria AdelaideAlbergaria Pereira,3 4 4 1 Sheila Aparecida Coelho Siqueira, RoselyAntunes Patzina, FelI¤cia Satie Ibuki, Mari Cleide Sogayar,5 Marcel Cerqueira Ce¤ sar Machado,2 and Daniel Giannella-Neto1, 3 Abstract Purpose: The biological behavior of insulinomas cannot be predicted based on histopathologic criteria in which the diagnosis of malignancy is confirmed by the presence of metastases. In this study, microarray and quantitative real-time reverse transcription-PCR were applied to identify differentially expressed genes between malignant and nonmalignant insulinomas to search for useful biomarkers to recognize the metastatic potential of insulinomas. Experimental Design: CodeLink human bioarrays were used to analyze differences in f20,000 genes between six well-differentiated endocrine tumors of benign behavior compared with one well-differentiated endocrine carcinoma (WDEC) and three metastases of endocrine carcinomas (MEC). Quantitative real-time reverse transcription-PCR was used to validate differ- ential expressions of five genes in a series of 35 sporadic insulinomas. Serpin peptidase inhibitor cladeA member1 (SERPINA1; a-1-antitrypsin) expression, identified as up-regulated in malignant insulinomas, was also evaluated by immunohistochemistry. Results: Analysis of microarray -
Comparative Transcriptomics Identifies Potential Stemness-Related Markers for Mesenchymal Stromal/Stem Cells
bioRxiv preprint doi: https://doi.org/10.1101/2021.05.25.445659; this version posted May 26, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Comparative Transcriptomics Identifies Potential Stemness-Related Markers for Mesenchymal Stromal/Stem Cells Authors Myret Ghabriel 1, Ahmed El Hosseiny 1, 2, Ahmed Moustafa*1, 2 and Asma Amleh*1, 2 Affiliations 1Biotechnology Program, American University in Cairo, New Cairo 11835, Egypt 2Department of Biology, American University in Cairo, New Cairo 11835, Egypt *Corresponding authors: Ahmed Moustafa [email protected] Asma Amleh [email protected]. Abstract Mesenchymal stromal/stem cells (MSCs) are multipotent cells residing in multiple tissues with the capacity for self-renewal and differentiation into various cell types. These properties make them promising candidates for regenerative therapies. MSC identification is critical in yielding pure populations for successful therapeutic applications; however, the criteria for MSC identification proposed by the International Society for Cellular Therapy (ISCT) is inconsistent across different tissue sources. In this study, we aimed to identify potential markers to be used together with the ISCT’s criteria to provide a more accurate means of MSC identification. Thus, we carried out a comparative analysis of the expression of human and mouse MSCs derived from multiple tissues to identify the common differentially expressed genes. We show that six members of the proteasome degradation system are similarly expressed across MSCs derived from bone marrow, adipose tissue, amnion, and umbilical cord. -
Genome-Wide Transcript and Protein Analysis Reveals Distinct Features of Aging in the Mouse Heart
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.28.272260; this version posted April 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Genome-wide transcript and protein analysis reveals distinct features of aging in the mouse heart Isabela Gerdes Gyuricza1, Joel M. Chick2, Gregory R. Keele1, Andrew G. Deighan1, Steven C. Munger1, Ron Korstanje1, Steven P. Gygi3, Gary A. Churchill1 1The Jackson Laboratory, Bar Harbor, Maine 04609 USA; 2Vividion Therapeutics, San Diego, California 92121, USA; 3Harvard Medical School, Boston, Massachusetts 02115, USA Corresponding author: [email protected] Key words for online indexing: Heart Aging Transcriptomics Proteomics eQTL pQTL Stoichiometry ABSTRACT Investigation of the molecular mechanisms of aging in the human heart is challenging due to confounding factors, such as diet and medications, as well limited access to tissues. The laboratory mouse provides an ideal model to study aging in healthy individuals in a controlled environment. However, previous mouse studies have examined only a narrow range of the genetic variation that shapes individual differences during aging. Here, we analyzed transcriptome and proteome data from hearts of genetically diverse mice at ages 6, 12 and 18 months to characterize molecular changes that occur in the aging heart. Transcripts and proteins reveal distinct biological processes that are altered through the course of natural aging. Transcriptome analysis reveals a scenario of cardiac hypertrophy, fibrosis, and reemergence of fetal gene expression patterns.