Opinion Mitochondrial Genomes of Domestic Animals Need Scrutiny Ni

Opinion

Mitochondrial Genomes of Domestic Animals Need Scrutiny

Ni-Ni Shi1,2,‡, Long Fan3,‡, Yong-Gang Yao2,4, Min-Sheng Peng1,2,*, Ya-Ping Zhang1,2,5,*

1 State Key Laboratory of Genetic Resources and Evolution, and Yunnan Laboratory of

Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese

Academy of Sciences, Kunming, Yunnan 650223, China

2 Kunming College of Life Science, University of Chinese Academy of Sciences,

Kunming, Yunnan 650204, China

3 School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong,

China

4 Key Laboratory of Animal Models and Human Disease Mechanisms, Kunming

Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China

5 Laboratory for Conservation and Utilization of Bio-Resources & Key Laboratory for

Microbial Resources of the Ministry of Education, Yunnan University, Kunming,

Yunnan 650091, China

‡ These authors contributed equally to this work.

* Correspondence:

Dr. Min-Sheng Peng

State Key Laboratory of Genetic Resources and Evolution, and Yunnan Laboratory of

Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese

Academy of Sciences, Kunming, China

Tel: +86 871-6518 9265

E-mail: [email protected]

Prof. Ya-Ping Zhang

State Key Laboratory of Genetic Resources and Evolution, and Yunnan Laboratory of

Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese

Academy of Sciences, Kunming, China

Tel: +86 871-6519 9030

Fax: +86 871-6519 5430

E-mail: [email protected]

Abstract

More than 1000 complete or near-complete mitochondrial DNA (mtDNA) sequences

have been deposited in GenBank for eight common domestic animals (i.e. cattle, dog,

goat, horse, pig, sheep, yak and chicken) and their close wild ancestors or relatives.

Nevertheless, few efforts have been performed to evaluate the sequence data quality,

which heavily impact the original conclusion. Herein, we conducted a phylogenetic

survey of these complete or near-complete mtDNA sequences based on mtDNA

haplogroup trees for the eight animals. We show that, errors due to artificial

recombination, surplus of mutations, and phantom mutations, do exist in 14.5%

(194/1342) of mtDNA sequences and shall be treated with wide caution. We propose

some caveats for mtDNA studies of domestic animals in the future.

Text

Mitochondrial DNA (mtDNA) is one of the most widely used markers in exploring

genetic diversity and tracing evolutionary history for human and domestic and wild animals. Since 2006, we witnessed the change from partial mtDNA sequence (e.g. control region) to complete mitochondrial genome in abundant studies of various domestic animals (Wang et al. 2014). Hitherto more than 1000 complete or near-complete mtDNA sequences have been deposited in GenBank for eight common domestic animals (i.e. cattle, dog, goat, horse, pig, sheep, yak and chicken) and their close wild ancestors or relatives (Table 1). However, most researchers took those reported mtDNA genomes of domestic animals in their data-mining and comparative analyses without any scrutiny for data quality. There are warnings as some sequences showing to contain sequencing errors (Achilli et al. 2012; Miao et al.

2013) and nuclear mtDNAs (NUMTs) contaminations (Hassanin et al. 2010), similar to a condition for human mtDNA studies (Yao et al. 2008; Yao et al. 2009).

Most of released mtDNA genome sequences of domestic animals were generated through several PCR and Sanger sequencing reactions (e.g. Pang et al. 2009; Yu et al.

2013). These practices are labor-intensive and prone to have errors, as has been well demonstrated in human mtDNA data generated through similar experimental protocols (Bandelt et al. 2006). It triggers us to ask: do the similar errors also occur in the mitochondrial genome data of domestic animals? Herein, we summarized three major kinds of errors (Table 2), and screened these errors in 1342 complete or

near-complete mtDNA sequences from eight domestic animals and their close wild ancestors or relatives (Table 1).

We adopted the phylogenetic strategy developed in human mtDNA analyses (Yao et al. 2009) based on the high-resolution genealogy (i.e. mtDNA haplogroup tree). In brief, mtDNA haplogroup tree can be constructed with the parsimony-like methods such as networks (Bandelt et al. 1999). And the haplogroups can be defined, each with diagnostic mutational motif - a string of characteristic mutations shared exclusively by the members belonging to certain haplogroup that define the internal branch directing to the haplogroup (internal node) in the tree (van Oven & Kayser

2009). When comparing with the defined reference sequence (Bandelt et al. 2014), variants in each sequence can be scored. According the haplogroup tree, the variants can be mapped on the internal branch as diagnostic mutations or on the terminal branch (tip). As a result, sequences with anomalous variants showing conflicts with their known phylogenetic status can be identified and shall be treated with caution.

This phylogenetic method has been proved to be powerful and sensitive for human mtDNA data quality assessment (Bandelt et al. 2006; Kong et al. 2008; Salas et al.

2005a; Yao et al. 2009).

Since 2007, the mtDNA haplogroup trees for pig (Wu et al. 2007), cattle (Achilli et al.

2009; Achilli et al. 2008; Bonfiglio et al. 2010; Bonfiglio et al. 2012), horse (Achilli et al. 2012), chicken (Miao et al. 2013), and sheep (Lancioni et al. 2013) have been

constructed. In terms of the available trees, we followed the proposed caveats

(Bandelt et al. 2006; Kong et al. 2008; Yao et al. 2008; Yao et al. 2009) to investigate the data quality. We discovered that potential errors occurred in cattle, horse, pig, and chicken (Table 3; Table S1). For instance, in five pig mitochondrial genomes published recently (Yu et al. 2013), two sequences (GenBank accession numbers

KC250273 and KC469586) were problematic (Figure 1a). The mis-added variants

C9553T-C9605T in KC250273 (which belongs to haplogroup D1e) are the diagnostic

motif of haplogroup E1a. Similarly, motifs T2374C (i.e. @2374)-T2613C,

A5672G-C5678T-T5708C-T5753C, and C9156T-C9157T in KC469586 (which belongs to

haplogroup D1a1a) characterize haplogroup E. The missed and mis-added mutations

most likely represent as “recombinants” of separate segments from different samples

of haplogroups E1a and E that are common in European pigs. The errors of artificial

recombination are likely due to sample mix-up or contamination with European pig

breed(s).

We followed the same approach to check mitochondrial genome data from other

domestic animals. We first reconstructed mtDNA haplogroup trees for dog, goat, and

yak (Table S2-S4) based on the parsimony-like method as described elsewhere (Miao

et al. 2013; Wu et al. 2007). The hierarchical haplogroup nomenclature systems were

updated from previous studies (Doro et al. 2014; Pang et al. 2009; Wang et al. 2010),

with referring to the rules in human mtDNA phylogeny (van Oven & Kayser 2009).

Not unexpectedly, several potential errors are detected in the mtDNA sequences of

these animals (Table 3; Table S1). For instance, a dog sequence (EU789672) from our previous study (Pang et al. 2009) was suspected to be corroded by artificial recombination. The diagnostic variants G2232A and T2227C-T2837C-G3296A, which

define haplogroups A1’2’3 and A3, respectively, are missing (Figure 1b). It was likely

due to sample mix-up with replacing the fragment around nucleotide position 2200 –

3300 of EU789672 with other sample of non-haplogroup A1’2’3. We re-amplified this

mtDNA and sequenced the entire mitochondrial genome. Indeed, the suspected

artificial recombination is confirmed (Figure 1b). The corrected sequence has been

updated in GenBank as KM113774.

In addition to artificial recombination, we show that, phantom mutation and poor sequencing quality do exist in mtDNA data of domestic animals (Table 3; Table S1).

When using the flawed sequences, it is prone to get erroneous claims. In some cases, it is expected that, the surplus of mutations can “increase” length of branch in the phylogeny and “accelerate” molecular evolution (e.g. detection of positive selection and violation of molecular clock). Indeed, there’re several cases reported in human mtDNA studies (e.g. Liu et al. 2012; Salas et al. 2005b). Moreover, phantom mutations most likely due to technological pitfalls in next-generation sequencing platforms (especially for homopolymers) are detected (Table S5). Similarly, data qualities of some human mtDNA sequences generated via next-generation sequencing platforms were far from being satisfied (Bandelt & Salas 2012).

Along with the progress of sequencing techniques, accumulation of mitochondrial

genome sequences from domestic animals is accelerating. The common practice of

generating and analyzing mtDNA data should be carried out with the necessary

caution. Analyses based on traditional phylogenetic software, at least in the related

literatures (e.g. Pang et al. 2009; Yu et al. 2013), are inefficient to discern those

errors. Thus, we suggest researchers to follow some caveats from human mtDNA

studies during experiments and data analyses (Bandelt et al. 2006; Kong et al. 2008;

Salas et al. 2005a; Yao et al. 2008; Yao et al. 2009). Phylogenetic analyses based on mtDNA haplogroup trees are recommended, although it may be difficult for a

non-expert or a novice in mtDNA analysis. Developing bioinformatic tools to make

the related analyses convenient and efficient should be encouraged in the future.

Furthermore, we suggest that these flawed sequences identified in this study (Table

S1) should be never used in future data-mining analyses, unless a correct one was

updated. We welcome the researchers of the original study take our warnings and

double check these sequences tagged with “flawed”, just as what we did for the dog

sequence EU789672.

Acknowledgments

This work was supported by the 973 program (2013CB835200, 2013CB835204). The

Youth Innovation Promotion Association, Chinese Academy of Sciences (CAS)

provided support to M-S.P. M -S.P. is a member of Youth Innovation Promotion

Association, CAS.

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Table Legends

Table 1. Summary of (near-)complete mtDNA genome sequences analyzed in this

study.

Table 2. Three kinds of common errors occurring in mtDNA data analyzed in this

study.

Table 3. mtDNA sequences with potential errors in eight domestic animals.

Figure Legends

Figure 1. The flawed mitochondrial genome sequences in pigs (a) and dogs (b).

The nucleotide positions in the sequences from pigs and dogs were scored relative to the reference sequences EF545567 and EU789787, respectively. Transitions are shown on the branches and transversions are further annotated by adding suffixes.

Deletions and insertions are indicated by ‘d’ and ‘+’, respectively. Mutations toward a base identical-by-state to the reference sequences are indicated with the prefix @.

Suspected mutations due to errors are in red; and their corresponding phylogenetic

status in haplogroup trees are underlined.

Supporting Information

Table S1. Potential errors identified in eight domestic animals.

Table S2. mtDNA haplogroup tree of dog and gray wolf.

Table S3. mtDNA haplogroup tree of goat.

Table S4. mtDNA haplogroup tree of yak.

Table S5. Potential errors detected in next-generation sequencing data.

Table 1 Summary of (near-)complete mtDNA genome sequences analyzed in this work.

Related Released by Reference Haplogroup Animals Species GenBank* sequence nomenclature Bos taurus 266 Cattle and Aurochs B. indicus 10 V00654 I, P, Q, R, and T B. primigenius 2 Yak and wild yak B. grunniens 79 GQ464259# A – E Dog and gray wolf Canis lupus 447 EU789787# A – F Horse and Equus caballus 254 JN398377 A – R Przewalski's horse E. przewalskii 9 Chicken and Red Gallus gallus 66 AP003321 A – I and X – Z Junglefowl Pig and wild boar Sus scrofa 127 EF545567 A, D, and E Sheep Ovis aries 47 AF010406 A – E Goat Capra hircus 35 GU068049 A – C

Note: *Access time: June 1st, 2014. #Reference sequences are defined in this work. Table 2. Three kinds of common errors occurring in mtDNA data analyzed in this study.

Errors Common Phenotypes Major Causes Missing diagnostic mutations; Sample mix-up; Artificial recombination mis-added diagnostic mutations of contamination different haplogroups Excessive unusual mutations, Sequencing errors; NUMTs Surplus of mutations especially transversions, indels and contamination heteroplasmic mutations Mutations are laboratory-specific Low quality of sequencing; Phantom mutation and occur repeatedly on different technical pitfalls of NGS haplogroup backgrounds

Table 3. mtDNA genome sequences with potential errors in eight domestic animals.

Released by Artificial Surplus of Phantom Animals GenBank recombination mutations mutations Cattle 278 1 1 7+34* Chicken 66 1 Dog 447 11 5 Goat 35 4 Horse 263 20 2 1+71* Pig 127 7 19 15 Sheep 47 2 Yak 79 7 1 Note: *detected in next-generation sequencing data (Table S5). (a) KC469586 (b) KC250273 1254+A 5753 2369d 8017 4842 @2374 9156 9553 2613 9157 9605 5672 @15220 9917T 5678 16111 D1e 5708 EU789672 D1a1a Reference 240 @2227 EF545567 300 278 Corrected @2232 599 451 EU789672 @2837 2065C 8135 14198 FJ237003 @3296 3594 11014A 15220 14710 D1 E1a D2 500 12587 9605 15892 4471 2374 @9837 16140 8581 11432 13478 15337 12064 A3b1 16301 15838 E1 D 16172 5948 240 11944 A3b 1315 15025 European Pig E 8318 5797 15721 11877 6164 16292 109 6138 11830 16005 6952 131 6171 12241 137C 6298 12298 A3 A1a 142+nA 6508 12370 144 6925T 12469 2227 7115 180 4459 8017 12649 152 7022 12518 2837 7517 Reference 305 5628 9435 13049 157 7321 12583 3296 7719 EU789787 451 5672 10070 14213 293 7486 12675 5427 8109 500 5708 10100 15685 574 7750 12958 5721T 9136 Z 1412 7339 10680 16111 1168 8371 12962 5898 15381 2339 7669 11184 16258 2064 8413 13433A 6884G 15610 4015 7837 11259 2071 8605 13605 291 A2’3 2840A A1 2613 8713 13838 3102 8743 14209 2981 10357 3962 3064 6296 3366 8761 14313A 14386G 4939 6970 3451 9058 14561C 4119 5463A 7513 3640 9225 14812 A1’2’3 7655 5636 9156 3873T 9234 14947 7927 5753 14639 4030 9553 15109 2232 8091 8510 4081 9752 15127 A1’2’3’4’5 Asian Pig A 4420 9973 15362 11164 12387 322 4369 8773 13581 4438 10484 15625 @15607 4489A 10517 15661 12416A 389 4711 9157 13997 A 13469 1175 4846 9789 14399 4737 10753 15961 4754 11018 16294 13588 1225 5369 9837 14738 3470 11966 5168T 11162 16297 13809 1304 5873 10529 14839 3599 12816 5207 11189 16358 13951 1639 6092 10816 14998 4518 13264 5552 11289 16456 15115 1990 7009 10944 15151 5010 13711 5678 11372 16552 15170 2335 7108 11071 15277 6471 15438 5880 11683 16564 15607 3088 7447 11366 @15337 8426 15983 5963 11786 16608 3999 8498 12109 16492 10407 4342 Root Root Supporting Information Table S1. Potential errors identified in eight domestic animals.

Sequence Potential Error Haplogroup Variants Missing Private Sources Most Diagnostic Matched Mutations Sequence AB074962( Phantom T4 105d, 169, 6178, 12158, 13310C, 15510, 16042, 16093, T4:587+C, 2536A, T4:105d, 6178 Mannen,H., Cattle and mutations: 16302 9682C Morimoto,M Aurochs) 105d, and . and Tsuji,S. missing Unpublished mutations 587+C, 2536A, 9682C. AB074963( Phantom T4a 105d, 169, 11174, 12158, 13310C, 14565, 15510, T4a:587+C, T4a:105d, 14565 Mannen,H., Cattle and mutations: 16042, 16093, 16302 2536A, 9682C Morimoto,M Aurochs) 105d, and . and Tsuji,S. missing Unpublished mutations 587+C, 2536A, 9682C. AB074964( Phantom T4 105d, 169, 12158, 13310C, 15510, 16093, 16302 T4:587+C, 2536A, T4:105d Mannen,H., Cattle and mutations: 9682C, 16042 Morimoto,M Aurochs) 105d, and . and Tsuji,S. missing Unpublished mutations 587+C, 2536A, 9682C. AB074965( Phantom T3k1 105d, 169, 4301, 6424, 10889, 12908, 13310C, 14140, T3k1:587+C, T3k1:105d, 4301, 6424, 14140, 16112, 16122 Mannen,H., Cattle and mutations: 16055, 16112, 16122 2536A, 9682C, Morimoto,M Aurochs) 105d, and 15910 . and Tsuji,S. missing Unpublished mutations 587+C, 2536A, 9682C. AB074966( Phantom T3k, T3q, 105d, 169, 221+C, 8400, 12908, 13310C, 14122, 16055, T3k:587+C, T3k:105d, 221+C, 8400, 14122, 16055, 16058, Mannen,H., Cattle and mutations: T3r_V00654 16058, 16088 2536A, 9682C; 16088; T3q:105d, 221+C, 8400, 12908, 14122, Morimoto,M Aurochs) 105d, and T3q:587+C, 16055, 16088; T3r_V00654:105d, 169, 221+C, 8400, . and Tsuji,S. missing 2536A, 9682C 12908, 13310C, 14122, 16055, 16058, 16088 Unpublished mutations 587+C, 2536A, 9682C. AB074967( Phantom T3n, 105d, 169, 2232, 13310C, 16119, 16302 T3n:587+C, T3n:105d, 2232, 16302; T3r_V00654:105d, 169, Mannen,H., Cattle and mutations: T3r_V00654 2536A, 9682C 2232, 13310C, 16119, 16302 Morimoto,M Aurochs) 105d, and . and Tsuji,S. missing Unpublished mutations 587+C, 2536A, 9682C. AB074968( Phantom T3n, 105d, 169, 2232, 13310C, 16104, 16119 T3n:587+C, T3n:105d, 2232, 16104; T3r_V00654:105d, 169, Mannen,H., Cattle and mutations: T3r_V00654 2536A, 9682C 2232, 13310C, 16104, 16119 Morimoto,M Aurochs) 105d, and . and Tsuji,S. missing Unpublished mutations 587+C, 2536A, 9682C. DQ124403 Artificial I 8, 106, 166, 173, 206, 221+C, 232, 233, 248, 249, 296, I:518, 737, 3931, I:173, 221+C, 649, 2575, 5705, 9302, 9480, 12158, Shin,H.D. (Cattle and recombination: 300, 587+C, 649, 761, 816, 1158, 1474, 1492, 1677, 3976, 3985, 12582, 13371, 16042, 16093 and Kim,L.H. Aurochs) missing 1824, 1860A, 1869, 2016, 2099, 2536A, 2558, 2575, 4000, 4328, Unpublished mutations 2953, 2977, 2979, 2988, 2989, 2990, 3051, 3071, 3136, 4442, 4937, 518,737, 3931, 3145, 3241, 3325, 3335, 3379, 3439, 3535, 3550, 3600, 7304, 7330, 3976, 3985, 3793, 3829, 3874, 4562, 4730, 4733, 4769, 4871, 5285, 7356, 7358, 4000, 4328, 5501, 5531, 5614, 5705, 5743, 5783, 5890, 5917, 5998, 7361, 7514, 4442, 4937, 6115T, 6235, 6340, 6367, 6379, 6436, 6460, 6727, 7830, 7851, 7304, 7330, 6772, 6881, 6922, 8210, 8308, 8370C, 8466, 8494, 8045, 8168, 7356, 7358, 8503, 8571, 8749, 8984, 9005, 9038, 9245, 9302, 9480, 8188, 8285, 7361, 7514, 9581, 9602, 9682C, 9767, 9891, 9930C, 9978, 10039, 9068, 12135, 7830, 7851, 10066, 10137, 10153, 10268, 10322, 10331, 10445, 12178, 12234, 8045, 8168, 10590, 10621, 10691G, 10849, 11000, 11035, 11068, 12377, 15579, 8188, 8285, 11134, 11200, 11266, 11329, 11407, 11419, 11803, 15593, 15818, 9068, 12135, 11842, 12158, 12433, 12468, 12469, 12513, 12582, 15951, 15953G, 12178, 12234, 12622, 12672, 12675, 12684, 12750, 12801, 12900Y, 15959, 15994, 12377, 15579, 12923T, 12924, 13005, 13056A, 13098, 13104, 13275, 16022, 16049, 15593, 15818, 13310C, 13371, 13380, 13433, 13437, 13554, 13564, 16057, 16058, 15951, 13584, 13677, 13689, 13692, 13882, 13908A, 13909, 16074, 16082, 15953G, 14036, 14066, 14120, 14129, 14138, 14255, 14315, 16102, 16109, 15959, 15994, 14411, 14416, 14503, 14606, 14825, 14858, 14897, 16113, 16116, 16022, 16049, 15105, 15134, 15146, 15287, 15308, 15326, 15563, 16117, 16119, 16057, 16058, 15605, 15617, 15627, 15629, 15741, 15751, 16042, 16121, 16122, 16074, 16082, 16093 16130, 16137, 16084, 16102, 16138, 16143d, 16109, 16113, 16147, 16196, 16116, 16117, 16229, 16247, 16119, 16121, 16248, 16300, 16122, 16130, 16301 16137, 16138, 16143d, 16147, 16196, 16200+A, 16229, 16247, 16248, 16300, 16301 of haplogroup I; mis-added mutations 12158,16042,1 6093 from haplogroup T3a1.

GU256940 Surplus of I1 8, 106, 166, 173, 206, 232, 233, 248, 249, 296, 300, I1:3051, 3976, I1:1495, 1600d, 3821, 3879, 3883, 3940, 3955, Wang,Z., (Cattle and mutations: 518, 587+C, 722, 737, 761, 816, 1158, 1474, 1492, 5743, 6922, 3979, 3982, 3988, 4018A, 4021, 7054, 7069, 7081, Shen,X., Aurochs) mis-added 1495, 1600d, 1677, 1824, 1860A, 1869, 2016, 2099, 12622, 14606, 7114, 7132, 7135, 7145, 8646, 9912, 14027, 16084, Liu,B., Su,J., mutations 2536A, 2558, 2575, 2634, 2953, 2977, 2979, 2988, 14825, 14858 16200+A Yonezawa,T., 3821, 3879, 2989, 2990, 3071, 3136, 3145, 3241, 3325, 3335, 3379, Yu,Y., Guo,S., 3883, 3940, 3439, 3535, 3550, 3600, 3793, 3821, 3829, 3874, 3879, Ho,S.Y.W., 3955, 3979, 3883, 3931, 3940, 3955, 3979, 3982, 3985, 3988, 4000, Vila,C., 3982, 3988, 4018A, 4021, 4328, 4442, 4562, 4730, 4733, 4769, Hasegawa,M 4018A, 4021, 4871, 4937, 4988A, 5285, 5501, 5531, 5614, 5783, . and Liu,J. 7054, 7069, 5890, 5917, 5998, 6115T, 6235, 6340, 6367, 6379, Unpublished 7081, 7114, 6436, 6460, 6727, 6772, 6881, 7054, 7069, 7081, 7114, 7132, 7135, 7132, 7135, 7145, 7304, 7330, 7356, 7358, 7361, 7514, 7145 of 7830, 7851, 8045, 8168, 8188, 8194, 8210, 8285, 8308, sequences of 8370C, 8466, 8494, 8503, 8514, 8571, 8646, 8749, Yak and wild 8984, 9005, 9038, 9068, 9245, 9302, 9480, 9581, 9602, yak. 9682C, 9767, 9891, 9912, 9930C, 9978, 10039, 10066, 10071, 10137, 10153, 10268, 10322, 10331, 10445, 10590, 10621, 10691G, 10849, 11000, 11035, 11068, 11134, 11200, 11266, 11329, 11407, 11419, 11803, 11842, 12135, 12178, 12234, 12377, 12433, 12468, 12469, 12513, 12672, 12675, 12684, 12750, 12801, 12900, 12923T, 12924, 13005, 13056A, 13098, 13101A, 13104, 13275, 13310C, 13371, 13380, 13433, 13437, 13554, 13564, 13584, 13628, 13677, 13689, 13692, 13882, 13908A, 13909, 14027, 14036, 14066, 14120, 14129, 14138, 14255, 14315, 14411, 14416, 14503, 14897, 15105, 15134, 15146, 15287, 15308, 15326, 15563, 15579, 15593, 15605, 15617, 15627, 15629, 15741, 15751, 15818, 15951, 15953G, 15959, 15994, 16022, 16049, 16057, 16058, 16074, 16082, 16084, 16102, 16109, 16113, 16116, 16117, 16119, 16121, 16122, 16130, 16137, 16138, 16143d, 16147, 16196, 16200+A, 16229, 16247, 16248, 16300, 16301

X52392(Ch Surplus of A 50-52d, 167, 210, 212, 225, 246, 315, 686, 707d, 859d, A:12961, 16263, A:50-52d, 210, 686, 707d, 859d, 2678, 3841-3842d, Desjardins,P. icken) mutations 1215, 1699C, 2071, 2209, 2678, 3841-3842d, 3952+G, 16371 3952+G, 5934C, 7098d, 7105-7106d, 7539C, and 5106, 5832, 5934C, 7098d, 7105-7106d, 7539C, 9806, 10958d, 14393+C, 14406d, 14853, 15445, 16131 Morais,R.J. 10270, 10447, 10958d, 12104, 12689, 13884, 14393+C, Mol. Biol. 14406d, 14853, 15445, 15693T, 15875, 16131 212 (4), 599-634 (1990) AY729880( Surplus of A1a2'3'4'5'6, 291, 517, 520, 520+TA, 521, 543+C, 640+A, 896A, A1a234'5'6:5010, A1a234'5'6:517, 520, 520+TA, 521, 543+C, 640+A, Zhu,S., Xu,Q. Dog and mutations. A1a3, A1a3a1 1169+G, 1183+A, 1449, 1881G, 1882A, 1883, 1886, 8282, 13264, 896A, 1169+G, 1183+A, 1449, 1881G, 1882A, 1883, and gray wolf) 1887, 1888C, 1889C, 1890C, 1893T, 1894, 1895, 1897, 13711, 16140; 1886, 1887, 1888C, 1889C, 1890C, 1893T, 1894, Chang,H. 1898, 1976+C, 2232, 2840A, 2963, 2981, 3122A, 3197, A1a3:5010, 8282, 1895, 1897, 1898, 1976+C, 3122A, 4647, Unpublished 3407, 3470, 3599, 3962, 4119, 4518, 4647, 8537, 13264, 5287-5288d, 5368, 5445, 6066, 7007+A, 7015, 5287-5288d, 5368, 5445, 6066, 6471, 7007+A, 7015, 13711, 16140; 8183T, 8222, 9915-9916d, 10168, 11703, 11712, 7655, 7927, 8091, 8183T, 8222, 8324, 8426, 8510, A1a3a1:5010, 11761G, 11771, 11967T, 12027, 12678, 12687T, 8704, 8765G, 9915-9916d, 10168, 10407, 10920, 6630, 8282, 12784G, 13266, 13597, 13621, 13663, 13780, 10995, 11164, 11703, 11712, 11761G, 11771, 11966, 13264, 13711, 15514+AGGTAAACCCTTCTCCCCTCCCC, 16065+T 11967T, 12027, 12387, 12416A, 12678, 12687T, 16140 A1a3:517, 520, 520+TA, 521, 543+C, 640+A, 896A, 12784G, 12791, 12816, 13266, 13469, 13588, 13597, 1169+G, 1183+A, 1449, 1881G, 1882A, 1883, 1886, 13621, 13663, 13780, 13809, 13951, 15115, 15170, 1887, 1888C, 1889C, 1890C, 1893T, 1894, 1895, 15217, 15438, 15514+AGGTAAACCCTTCTCCCCTCCCC, 1897, 1898, 1976+C, 3122A, 4647, 5287-5288d, 15607, 15983, 16005, 16065+T,16140 5368, 5445, 6066, 7007+A, 7015, 8183T, 8222, 9915-9916d, 11703, 11712, 11761G, 11771, 11967T, 12027, 12678, 12687T, 12784G, 13266, 13597, 13621, 13663, 13780, 15514+AGGTAAACCCTTCTCCCCTCCCC,16065+T A1a3a1:517, 520, 520+TA, 521, 543+C, 640+A, 896A, 1169+G, 1183+A, 1449, 1881G, 1882A, 1883, 1886, 1887, 1888C, 1889C, 1890C, 1893T, 1894, 1895, 1897, 1898, 1976+C, 3122A, 4647, 5287-5288d, 5368, 5445, 6066, 7007+A, 7015, 8183T, 8222, 9915-9916d, 11703, 11712, 11761G, 11771, 11967T, 12027, 12678, 12687T, 12784G, 13266, 13597, 13621, 13663, 13780, 15514+AGGTAAACCCTTCTCCCCTCCCC,16065+T EU789758( Artificial B1c 16, 291, 381A, 445, 1454, 1756, 2185, 2813, 2840A, 6258 B1: 6471 15918d Pang JF, Dog and recombination: 2981, 3962, 4119, 4205, 4278, 4391, 4647, 6111, 6471, Kluetsch C, gray wolf) missing 6765, 7655, 7927, 8091, 8222C, 8226, 8510, 8570, Zou XJ, mutation 6258 8737, 8761, 8818, 8878, 8992, 9220, 9826, 10260, Zhang AB, from 10443, 10536T, 10545, 11164, 11253, 11405, 11951, Luo LY, haplogroup B1; 12387, 12416A, 12668, 13469, 13588, 13597, 13621, Angleby H, mis-added 13663, 13780, 13809, 13951, 14674, 14933, 15115, Ardalan A, mutations 15170, 15575, 15592, 15607, 15612, 15619, 15623, Ekström C, 6471 of 15632, 15780, 15795, 15892, 15918d, 15935, 16140, Sköllermo A, haplogroup 16141 Lundeberg J, A1'2'3'4'5'6. Matsumura S, Leitner T, Zhang YP, Savolainen P. Mol. Biol. Evol. 26 (12), 2849-2864 (2009) JF342814( Artificial B1a4 16, 291, 381A, 445, 1454, 1756, 2185, 2813, 2840A, B1a4:11951, B1a4:2891N, 2892N, 2893N, 2894N, 2895N, 2896N, Imes Dog and recombination: 2891N, 2892N, 2893N, 2894N, 2895N, 2896N, 2897N, 15575, 15592, 2897N, 2898N, 2899N, 2900N, 2901N, 9183N, DL, Wictum gray wolf) missing 2898N, 2899N, 2900N, 2901N, 2981, 3029C, 3962, 15612, 15619, 9184N, 9185N, 9186N, 9286N, 9287N, 9288N, EJ, Allard mutations 4119, 4205, 4278, 4391, 4647, 6258, 6765, 7015, 7655, 15623, 15632, 9289N, 9290N, 9291N, 9292N, 9293N, 9294N, MW, Sacks 11951, 15575, 7927, 8091, 8102, 8222C, 8226, 8510, 8570, 8737, 15780, 15795, 10617A, 11966, 13781, BN. Forensic 15592, 15612, 8761, 8818, 8878, 8992, 9183N, 9184N, 9185N, 9186N, 15892, 15935, 15514+AGGTAAACCCTTCTCCCCTCCCC, 15983, Sci Int 15619, 15623, 9220, 9286N, 9287N, 9288N, 9289N, 9290N, 9291N, 16141 16005 Genet.6 (5), 15632, 15780, 9292N, 9293N, 9294N, 9826, 10260, 10443, 10536T, 630-639 15795,15892, 10545, 10560, 10617A, 11164, 11179, 11253, 11405, (2012) 15935 from 11966, 12387, 12416A, 12668, 13429, 13469, 13588, haplogroup 13597, 13621, 13663, 13780, 13781, 13809, 13951, B1a4; 14674, 14933, 15115, 15170, mis-added 15514+AGGTAAACCCTTCTCCCCTCCCC, 15607, 15983, mutations 16005,16140 11966 of haplogroup A1'2'3'4'5'6. JF342821(( Artificial C1b_EU4082 16, 291, 381A, 557, 1046, 1204, 1454, 1709, 1748, C1b_EU408293:4 C1b_EU408293:4518, 8161, 11551T, 11598C, Imes Dog and recombination: 93 1756, 2840A, 2981, 3962, 4119, 4518, 5625, 6258, 235, 4504, 14695 15514+AGGTAAACCCTTCTTCCCTCCCC, 15918d DL, Wictum gray wolf) missing 7059, 7113, 7187A, 7364, 7655, 7927, 8091, 8161, EJ, Allard mutations 8222C, 8226, 8510, 8761, 8878, 8992, 9223, 9709, MW, Sacks 4235, 4504 of 9866+A, 10536T, 10779, 10788, 10866, 11103, 11164, BN. Forensic haplogroup C. 11253, 11325, 11403, 11405, 11551T, 11575C, 11598C, Sci Int 11842, 12125, 12275, 12333, 12387, 12416A, 12639, Genet.6 (5), 13115, 13469, 13588, 13621, 13663, 13780, 13809, 630-639 13951, 14611, 14650, 15115, 15170, 15188, 15511, (2012) 15514+AGGTAAACCCTTCTTCCCTCCCC, 15591, 15601, 15607, 15619, 15630, 15780, 15892, 15918d, 15935,16174 JF342824( Artificial D1a1 162, 291, 658, 1454, 1689, 2232, 2280N, 2281N, 2656, D1a1:1873, 2855, D1a1:2232, 2280N, 2281N, 4518, 5974N, 5975N, Imes Dog and recombination: 2840A, 2981, 3035, 3452, 3466, 3629, 3938, 3941, 14507, 14809 5976N, 7619N, 7620N, 7621N, 7622N, 7623N, DL, Wictum gray wolf) missing 3951, 3962, 4119, 4467, 4485, 4518, 4592, 4596, 5520, 7624N, 9286N, 9287N, 9288N, 9289N, 9290N, EJ, Allard mutations 5938, 5974N, 5975N, 5976N, 6054, 6093, 6258, 6768, 9291N, 9292N, 9293N, 9294N, 9295N, 12971, MW, Sacks 1873, 2855 of 6861, 6882, 7619N, 7620N, 7621N, 7622N, 7623N, 14650, 15514+AGGTAAACCCTTCTCCCCTCCCC BN. Forensic haplogroup 7624N, 7655, 7927, 8091, 8109, 8226, 8391, 8510, Sci Int D1; mis-added 8671, 8761, 8783, 8854, 8971, 8992, 9286N, 9287N, Genet.6 (5), mutations 9288N, 9289N, 9290N, 9291N, 9292N, 9293N, 9294N, 630-639 2232 from 9295N, 9836, 9887, 10063, 10162, 10198, 10314, (2012) haplogroup 10349, 10536T, 10683, 10728, 11164, 11253, 11405, A'1'2'3. 11803, 11900, 11987, 12387, 12416A, 12668, 12821, 12971, 13469, 13588, 13597, 13663, 13780, 13809, 13951, 14611, 14650, 15115, 15170, 15290, 15514+AGGTAAACCCTTCTCCCCTCCCC, 15605, 15607, 15612, 15614, 15616, 15619, 15623, 15780, 15795, 15828, 15892, 15935, 15939,16139 JF342826( Surplus of B1a 16, 291, 381A, 445, 1454, 1756, 2185, 2813, 2840A, B1a:15623 B1a:2982G,2983A,2985N, 2986N, 2987N, 2988N, Imes Dog and mutations: 2981, 2982G, 2983A, 2984T, 2985N, 2986N, 2987N, 2989N, 2990N, 2991N, DL, Wictum gray wolf) sequencing 2988N, 2989N, 2990N, 2991N, 3029C, 3962, 4119, 15514+AGGTAAACCCTTCTTCCCTCCCC EJ, Allard errors 2982G, 4205, 4278, 4391, 4518, 4647, 6258, 6765, 6916+C, MW, Sacks 2983A. 6928+T, 7015, 7655, 7927, 8091, 8102, 8222C, 8226, BN. Forensic 8510, 8570, 8737, 8761, 8818, 8878, 8992, 9220, 9826, Sci Int 10260, 10443, 10536T, 10545, 11164, 11179, 11253, Genet.6 (5), 11405, 11951, 12387, 12416A, 12668, 13469, 13588, 630-639 13597, 13621, 13663, 13780, 13809, 13951, 14674, (2012) 14933, 15115, 15170, 15514+AGGTAAACCCTTCTTCCCTCCCC, 15575, 15592, 15607, 15612, 15619, 15632, 15780, 15795, 15892, 15935,16140,16141 JF342827( Artificial A1a3b 291, 2232, 2840A, 2963, 2981, 3197, 3407, 3470, 3599, A1a3b:6471 A1a3b:6765, 7015, 7024N, 7025N, 7026N, 7027N, Imes Dog and recombination: 3962, 4119, 4518, 5010, 6765, 7015, 7024N, 7025N, 7028N, 7029N, 7030N, 7031N, 7032N, 7033N, DL, Wictum gray wolf) missing 7026N, 7027N, 7028N, 7029N, 7030N, 7031N, 7032N, 7034N, 7035N, 7036N, 7037N, 7038N, 7039N, EJ, Allard mutations 7033N, 7034N, 7035N, 7036N, 7037N, 7038N, 7039N, 7040N, 7041N, 7042N, 7043N, 7044N, 7045N, MW, Sacks 6471 of 7040N, 7041N, 7042N, 7043N, 7044N, 7045N, 7046N, 7046N, 7047N, 7048N, 7049N, 7050N, 7051N, BN. Forensic haplogroup 7047N, 7048N, 7049N, 7050N, 7051N, 7052N, 7053N, 7052N, 7053N, 7054N, 7055N, 7056N, 7057N, Sci Int A1'2'3'4'5'6; 7054N, 7055N, 7056N, 7057N, 7058N, 7059N, 7060N, 7058N, 7059N, 7060N, 7061N, 7062N, 7063N, Genet.6 (5), mis-added 7061N, 7062N, 7063N, 7064N, 7065N, 7066N, 7067N, 7064N, 7065N, 7066N, 7067N, 7068N, 7069N, 630-639 mutations 7068N, 7069N, 7070N, 7071N, 7072N, 7073N, 7074N, 7070N, 7071N, 7072N, 7073N, 7074N, 7075N, (2012) 6765, 7015 7075N, 7076N, 7077N, 7078N, 7079N, 7080N, 7081N, 7076N, 7077N, 7078N, 7079N, 7080N, 7081N, from 7082N, 7083N, 7084N, 7085N, 7086N, 7087N, 7088N, 7082N, 7083N, 7084N, 7085N, 7086N, 7087N, haplogroup 7089N, 7090N, 7091N, 7092N, 7093N, 7094N, 7095N, 7088N, 7089N, 7090N, 7091N, 7092N, 7093N, B1a. 7096N, 7097N, 7098N, 7099N, 7100N, 7101N, 7102N, 7094N, 7095N, 7096N, 7097N, 7098N, 7099N, 7103N, 7104N, 7105N, 7106N, 7107N, 7108N, 7109N, 7100N, 7101N, 7102N, 7103N, 7104N, 7105N, 7110N, 7111N, 7112N, 7113N, 7114N, 7115N, 7116N, 7106N, 7107N, 7108N, 7109N, 7110N, 7111N, 7117N, 7118N, 7119N, 7120N, 7121N, 7122N, 7123N, 7112N, 7113N, 7114N, 7115N, 7116N, 7117N, 7124N, 7125N, 7126N, 7127N, 7128N, 7129N, 7130N, 7118N, 7119N, 7120N, 7121N, 7122N, 7123N, 7131N, 7132N, 7133N, 7134N, 7247A, 7619N, 7620N, 7124N, 7125N, 7126N, 7127N, 7128N, 7129N, 7621N, 7655, 7927, 8091, 8282, 8324, 8426, 8510, 7130N, 7131N, 7132N, 7133N, 7134N, 7247A, 8537, 8704, 8765G, 9286N, 9287N, 9288N, 9289N, 7619N, 7620N, 7621N, 9286N, 9287N, 9288N, 9290N, 9291N, 9292N, 9293N, 9294N, 9295N, 9296N, 9289N, 9290N, 9291N, 9292N, 9293N, 9294N, 9297N, 10168, 10407, 10920, 10995, 11164, 11966, 9295N, 9296N, 9297N, 14731N, 14732N, 14733N, 12387, 12416A, 12791, 12816, 13264, 13469, 13588, 14734N, 14735N, 14736N, 13711, 13809, 13951, 14477, 14731N, 14732N, 15514+AGGTAAACCCTTCTCCCCTCCCC 14733N, 14734N, 14735N, 14736N, 15115, 15170, 15217, 15438, 15514+AGGTAAACCCTTCTCCCCTCCCC, 15607, 15983, 16005,16140

JF342841( Artificial A1c1a1a_EU4 291, 2232, 2646, 2840A, 2981, 3407, 3470, 3599, 3962, A1c1a1a_EU4082 A1c1a1a_EU408263:6467, 6765, 7015, 8594+A, Imes Dog and recombination: 08263 4119, 4304, 4518, 4941, 5010, 6467, 6765, 7015, 7594, 63:1351, 6402, 14731N, 14732N, 14733N, 14734N, 14735N, DL, Wictum gray wolf) missing 7655, 7927, 8091, 8324, 8426, 8510, 8594+A, 8704, 6471, 6555 15514+AGGTAAACCCTTCTCCCCTCCCC, EJ, Allard mutations 8765G, 10407, 10614T, 10920, 11164, 11966, 12203, MW, Sacks 6402, 6471, 12387, 12416A, 12791, 12816, 13264, 13469, 13588, BN. Forensic 6555 of 13711, 13809, 13951, 14731N, 14732N, 14733N, Sci Int haplogroup 14734N, 14735N, 14980, 15115, 15170, 15438, Genet.6 (5), A1a1c; 15514+AGGTAAACCCTTCTCCCCTCCCC, 15600, 15935, 630-639 mis-added 15983,16132+2C,16140,16141 (2012) mutations 6765, 7015 from haplogroup B1a. JF342853( Artificial C2d 16, 291, 381A, 557, 1204, 1454, 1709, 1748, 1756, C2d:2840A, C2d:8282, 8324, 8426, 14887, Imes Dog and recombination: 2981, 3495, 3962, 4119, 4235, 4504, 5625, 6258, 8222C, 8226, 15514+AGGTAAACCCTTCTTCCCTCCCC, DL, Wictum gray wolf) missing 6712A, 6741, 6864, 7059, 7655, 7927, 8091, 8282, 11575C, 15511 15918d,16173C EJ, Allard mutations 8324, 8426, 8510, 8761, 8878, 8992, 9223, 9709, MW, Sacks 8222C, 8226 of 9866+A, 10536T, 10779, 10788, 11164, 11250, 11253, BN. Forensic haplogroup C; 11325, 11403, 11405, 11962, 12125, 12275, 12333, Sci Int mis-added 12349A, 12387, 12416A, 12639, 13469, 13588, 13621, Genet.6 (5), mutations 13663, 13780, 13794, 13809, 13951, 14611, 14650, 630-639 8324, 8426 14887, 15115, 15170, 15188, 15375, (2012) from 15514+AGGTAAACCCTTCTTCCCTCCCC, 15591, 15607, haplogroup 15619, 15630, 15690, 15780, 15892, 15918d, A1. 15935,16173C JF342868( Artificial C2 16, 291, 381A, 557, 1204, 1454, 1709, 1748, 1756, C2:9709, 9866+A, C2:11669N, 11670N, 11671N, 11672N, 11673N, Imes Dog and recombination: 2840A, 2981, 3495, 3962, 4119, 4235, 4504, 5625, 10536T 11674N, 11675N, DL, Wictum gray wolf) missing 6258, 6712A, 6741, 6864, 7059, 7655, 7927, 8091, 15514+AGGTAAACCCTTCTTCCCTCCCC, 15533, EJ, Allard mutations 8222C, 8226, 8510, 8761, 8878, 8992, 9223, 10779, 15918d MW, Sacks 9709, 9866+A, 10788, 11164, 11250, 11253, 11325, 11403, 11405, BN. Forensic 10536T of 11575C, 11669N, 11670N, 11671N, 11672N, 11673N, Sci Int haplogroup 11674N, 11675N, 11962, 12125, 12275, 12333, Genet.6 (5), C1'2. 12349A, 12387, 12416A, 12639, 13469, 13588, 13621, 630-639 13663, 13780, 13794, 13809, 13951, 14611, 14650, (2012) 14695, 15115, 15170, 15188, 15375, 15511, 15514+AGGTAAACCCTTCTTCCCTCCCC, 15533, 15591, 15607, 15619, 15630, 15690, 15780, 15892, 15918d, 15935 JF342869( Artificial B1a2 16, 291, 381A, 445, 1454, 1756, 2185, 2813, 2840A, B1a2:10260, B1a2:15514+AGGTAAACCCTTCTTCCCTCCCC Imes Dog and recombination: 2981, 3029C, 3962, 4119, 4205, 4278, 4391, 4647, 10443, 10545, DL, Wictum gray wolf) missing 6258, 6765, 7015, 7655, 7927, 8091, 8102, 8222C, 16140, 16141 EJ, Allard mutations 8226, 8510, 8570, 8737, 8761, 8818, 8878, 8992, 9220, MW, Sacks 10260, 10443, 9826, 10536T, 11164, 11179, 11253, 11405, 11951, BN. Forensic 10545 of 12387, 12416A, 12668, 13469, 13588, 13597, 13621, Sci Int haplogroup B1. 13663, 13780, 13809, 13951, 14546, 14674, 14933, Genet.6 (5), 15115, 15170, 15514+AGGTAAACCCTTCTTCCCTCCCC, 630-639 15575, 15592, 15607, 15612, 15619, 15623, 15632, (2012) 15780, 15795, 15892, 15935 JF342893( Surplus of A1a2_JF3428 44, 291, 713, 2232, 2840A, 2895N, 2896N, 2897N, A1a2_JF342893:2895N, 2896N, 2897N, 2898N, Imes Dog and mutations: 93 2898N, 2899N, 2963, 2981, 3197, 3407, 3470, 3599, 2899N, 9287N, 9288N, 9289N, 9290N, 9291N, DL, Wictum gray wolf) sequencing 3962, 4119, 4518, 5010, 5232, 6471, 7655, 7927, 8091, 15514+AGGTAAACCCTTCTCCCCTCCCC EJ, Allard error:13056-13 8282, 8324, 8426, 8510, 8704, 8765G, 9287N, 9288N, MW, Sacks 059d 13063A 9289N, 9290N, 9291N, 9583, 10407, 10920, 10995, BN. Forensic 13064 13065. 11164, 11966, 12387, 12416A, 12791, 12816, Sci Int 13056-13059d, 13063A, 13064, 13065, 13264, 13469, Genet.6 (5), 13588, 13711, 13765, 13809, 13951, 14082, 15115, 630-639 15170, 15217, 15438, (2012) 15514+AGGTAAACCCTTCTCCCCTCCCC, 15607, 15983, 16005,16140 JF342894( Surplus of A1a3a 291, 2232, 2279N, 2280N, 2281N, 2282N, 2283N, A1a3a:2279N, 2280N, 2281N, 2282N, 2283N, Imes Dog and mutations. 2284N, 2840A, 2895N, 2896N, 2897N, 2898N, 2899N, 2284N, 2895N, 2896N, 2897N, 2898N, 2899N, 8992, DL, Wictum gray wolf) 2963, 2981, 3197, 3407, 3470, 3599, 3962, 4119, 4518, 11476C, 11483C, 11504d, 11512, 11533d, 11548, EJ, Allard 5010, 6471, 6630, 7655, 7927, 8091, 8282, 8324, 8426, 11550-11551d, 11560-11561d, 11574d, 11585d, MW, Sacks 8510, 8537, 8704, 8765G, 8992, 10168, 10407, 10920, 11596C, 11597-11599d, 11624d, 11636d, 12271, BN. Forensic 10995, 11164, 11476C, 11483C, 11504d, 11512, 12273+TC, 13105G, Sci Int 11533d, 11548, 11550-11551d, 11560-11561d, 15514+AGGTAAACCCTTCTCCCCTCCCC Genet.6 (5), 11574d, 11585d, 11596C, 11597-11599d, 11624d, 630-639 11636d, 11966, 12271Y, 12273+TC, 12387, 12416A, (2012) 12791, 12816, 13105G, 13264, 13469, 13588, 13711, 13809, 13951, 15115, 15170, 15217, 15438, 15514+AGGTAAACCCTTCTCCCCTCCCC, 15607, 15983, 16005,16140 JF342901( Artificial A1c1a1a 16, 291, 381A, 399, 445, 1351, 2232, 2840A, 2981, A1c1a1a:16, 381A, 399, 445, 10995, Imes Dog and recombination: 3407, 3470, 3599, 3962, 4119, 4304, 4518, 4941, 5010, 15514+AGGTAAACCCTTCTCCCCTCCCC DL, Wictum gray wolf) mis-added 6402, 6471, 6555, 7594, 7655, 7927, 8091, 8324, 8426, EJ, Allard mutations 16, 8510, 8704, 8765G, 10407, 10614T, 10920, 10995, MW, Sacks 381A, 445 11164, 11966, 12203, 12387, 12416A, 12791, 12816, BN. Forensic from 13264, 13469, 13588, 13711, 13809, 13951, 14980, Sci Int haplogroup B1. 15115, 15170, 15438, Genet.6 (5), 15514+AGGTAAACCCTTCTCCCCTCCCC, 15600, 15935, 630-639 15983, 16132+2C,16140,16141 (2012) EU408251 Artificial C2 16, 291, 381A, 557, 1204, 1454, 1709, 1748, 1756, C2:9709, 9866+A, C2:3599, 7834, 10407, 10614T, 10920, Webb,K.M. (Dog and recombination: 2840A, 2981, 3495, 3599R, 3962, 4119, 4235Y, 4504, 10779, 10788 15514+AGGTAAACCCTTCTTCCCTCCCC, 15918d and gray wolf) missing 5625, 6258, 6712A, 6741, 6864, 7059, 7655, 7834, Allard,M.W. mutations 7927, 8091, 8222C, 8226, 8510, 8761, 8878, 8992, J. Forensic 9709, 9866+A, 9223Y, 10407, 10536W, 10614T, 10920R, 11164, 11250, Sci. 54 (2), 10779, 10788 11253, 11325, 11403, 11405, 11575C, 11962, 12125, 275-288 of 12275, 12333, 12349A, 12387, 12416A, 12639, 13469, (2009) haplogroup C; 13588, 13621, 13663, 13780, 13794, 13809, 13951, mis-added 14611, 14650, 14695, 15115, 15170, 15188, 15375, mutations 15511, 15514+AGGTAAACCCTTCTTCCCTCCCC, 15591Y, 10407, 10614T, 15607, 15619, 15630, 15690, 15780, 15892, 15918d, 10920 from 15935 haplogroup A1. DQ480503 Surplus of Q1_KF66103 291, 381A, 767, 1187+T, 1454, 1685, 1756, 2196, Q1_KF661039:1187+T, 7232, 10321, 12689, 12704, Bjornerfeldt, (Dog and mutations. 9 2840A, 2945, 2981, 3314, 3476, 3533, 3962, 4119, 12740, 12743, 12746, 12750, 12752, 12794, 12795, S., gray wolf) 4497, 4748, 4904, 4947, 5278, 6258, 6948, 7109, 7232, 12806, 12821, 12833, 12842, 12845, 12857, 12860, Webster,M.T. 7463, 7526, 7655, 7927, 8091, 8391, 8510, 8566, 8761, 12863, 12878, 12893, 12896, 12899G, 12903, and Vila,C. 8878, 8992, 9079, 9805, 10278, 10321, 10536T, 11164, 12926, 12929, 12935, 12962, 13046, 13070A, Genome Res. 11253, 11405, 11477, 12010, 12387, 12407A, 12416A, 13118, 13175, 13178, 13244, 13246, 16 (8), 12689, 12704, 12740, 12743, 12746, 12750, 12752, 15514+AGGTAAACCCTTCTTCCCTCCCC, 15918d, 990-994 12794, 12795, 12806, 12821, 12833, 12842, 12845, 15935 (2006) 12857, 12860, 12863, 12878, 12893, 12896, 12899G, 12903, 12926, 12929, 12935, 12962, 13046, 13070A, 13118, 13166, 13175, 13178, 13244, 13246, 13265A, 13331, 13430, 13469, 13588, 13617, 13621, 13663, 13780, 13809, 13951, 14022, 14440, 14611, 15115, 15170, 15378, 15514+AGGTAAACCCTTCTTCCCTCCCC, 15601, 15780, 15794, 15797, 15800, 15892, 15918d, 15935 GU229278 Surplus of A2a1a 177G, 179, 180-181d, 1395+A, 2140, 2141, 2208, 4654, A2a1a:15811 A2a1a:177G, 179, 180-181d, 1395+A, 2140, 2141, Wu,Y.P. and (Goat) mutations. 4942, 5127, 5710, 6523, 7840, 8828, 8834, 8858, 8861, 2208, 4654, 5127, 5710, 7840, 8828, 8834, 8858, Ma,Y.H. 8864, 9311, 10028, 11062, 11128, 12252, 12257, 8861, 8864, 9311, 12252, 12257, 12266, 12277, Direct 12266, 12277, 12278, 12281C, 12287, 12290, 12293, 12278, 12281C, 12287, 12290, 12293, 12299, Submission 12299, 12300, 12314, 12318, 12335, 12338, 12341, 12300, 12314, 12318, 12335, 12338, 12341, 12362, 12362, 12368C, 12377, 12380, 12383, 12386, 12392C, 12368C, 12377, 12383, 12386, 12392C, 12393, 12393, 12396, 12397, 12398A, 12399, 12404, 12408, 12396, 12397, 12398A, 12399, 12404, 12408, 12410, 12419, 12422, 12428, 12446, 12452, 12470T, 12410, 12419, 12422, 12428, 12446, 12452, 12470T, 12476, 12484, 12530, 12531, 12533, 12536, 12537, 12476, 12484, 12530, 12531, 12533, 12536, 12537, 12539, 12557, 12579, 12590, 12593, 12594, 12599, 12539, 12557, 12579, 12590, 12593, 12594, 12599, 12608, 12623, 12641, 12671, 12677, 12689, 12716, 12608, 12623, 12641, 12671, 12677, 12689, 12716, 12717, 12719, 12725, 12737, 12743, 12761, 12762, 12717, 12719, 12725, 12737, 12743, 12761, 12762, 12763, 12779, 12793, 12800, 12801, 12812, 12824, 12763, 12779, 12793, 12800, 12801, 12812, 12824, 12836, 12851, 12878, 12881, 12884, 12899, 12927, 12836, 12851, 12878, 12881, 12884, 12899, 12927, 12932, 12950, 12953, 12984, 12990, 12992, 12998, 12932, 12950, 12953, 12984, 12990, 12992, 12998, 13001, 13007, 13008, 13016, 13019, 13020, 13022T, 13001, 13007, 13008, 13016, 13019, 13020, 13022T, 13028, 13031, 13034, 13049, 13067, 13070, 13072C, 13028, 13031, 13049, 13067, 13070, 13072C, 13073, 13091, 13114C, 13119, 13124, 13130, 13133, 13073, 13091, 13114C, 13119, 13124, 13130, 13137, 13146A, 13151, 13163, 13187A, 13214, 13226, 13133, 13137, 13146A, 13151, 13163, 13187A, 13244, 13250, 13256, 13258, 13259, 13260, 13261G, 13214, 13226, 13244, 13250, 13256, 13258, 13259, 13262, 13271, 13274, 13275A, 13280, 13286, 13290, 13260, 13261G, 13262, 13271, 13274, 13275A, 13293, 13304C, 13316, 13319, 13323, 13343, 13357, 13280, 13286, 13290, 13293, 13304C, 13316, 13358G, 13371, 13382, 13400, 13425, 13427, 13430, 13319, 13323, 13343, 13357, 13358G, 13371, 13445, 13450T, 13457, 13477, 13483, 13496, 13502, 13382, 13400, 13425, 13427, 13430, 13445, 13503, 13520, 13523, 13532, 13535, 13548, 13551, 13450T, 13457, 13477, 13483, 13496, 13502, 13503, 13582, 13597, 13639, 13675, 13680A, 13728, 13732, 13520, 13523, 13532, 13535, 13548, 13551, 13582, 13741, 13753, 13756, 13759, 13768, 13792, 13800, 13597, 13639, 13675, 13680A, 13728, 13732, 13810, 13813, 13843, 13846, 13867, 15530, 15616, 13741, 13753, 13756, 13759, 13768, 13792, 13800, 15636, 15645, 15920, 15976, 16000, 16028, 16066, 13810, 13813, 13843, 13846, 13867, 15530, 15616, 16435, 16504+C 15636, 15645, 15920, 15976, 16504+C GU229279 Surplus of B_KF952601 177G, 179, 180-181d, 205, 1395+A, 1850, 2092, 2208, B_KF952601:112 B_KF952601:177G, 179, 180-181d, 1395+A, 2092, Wu,Y.P. and (Goat) mutations. 2417, 2850, 3195, 3469, 4033, 4802, 4942, 4964, 0+C, 8819, 2417, 2850, 4802, 4964, 4988d, 9441, 9920C, Ma,Y.H. 4988d, 5602, 6097, 6523, 7053, 7301, 7343, 7661, 12584, 13100A, 11089, 12252, 12257, 12266, 12277, 12278, Direct 7840, 7886, 8056, 8079, 8481, 8636, 8731, 8960, 9011, 13178, 13681, 12281C, 12287, 12290, 12293, 12299, 12300, Submission 9441, 9673, 9827, 9920C, 10028, 10480, 10639, 10687, 13762, 14728, 12314, 12318, 12335, 12338, 12341, 12362, 10814, 11062, 11089, 11128, 11173, 11365, 11691, 15977d 12368C, 12377, 12386, 12392C, 12393, 12396, 11702, 11872, 12252, 12257, 12266, 12277, 12278, 12397, 12398A, 12399, 12404, 12408, 12410, 12281C, 12287, 12290, 12293, 12299, 12300, 12314, 12419, 12422, 12428, 12446, 12452, 12470T, 12476, 12318, 12335, 12338, 12341, 12362, 12368C, 12377, 12484, 12530, 12531, 12533, 12536, 12537, 12539, 12380, 12383, 12386, 12392C, 12393, 12396, 12397, 12557, 12579, 12590, 12593, 12594, 12599, 12608, 12398A, 12399, 12404, 12408, 12410, 12419, 12422, 12623, 12641, 12671, 12677, 12689, 12716, 12717, 12428, 12446, 12452, 12470T, 12476, 12484, 12530, 12719, 12725, 12737, 12743, 12761, 12762, 12763, 12531, 12533, 12536, 12537, 12539, 12557, 12579, 12779, 12793, 12800, 12801, 12812, 12824, 12836, 12590, 12593, 12594, 12599, 12608, 12623, 12641, 12851, 12878, 12881, 12884, 12899, 12927, 12932, 12671, 12677, 12689, 12716, 12717, 12719, 12725, 12950, 12953, 12984, 12990, 12992, 12998, 13001, 12737, 12743, 12761, 12762, 12763, 12779, 12793, 13007, 13008, 13016, 13019, 13020, 13022T, 13028, 12800, 12801, 12812, 12824, 12836, 12851, 12878, 13031, 13049, 13067, 13070, 13072C, 13073, 12881, 12884, 12899, 12927, 12932, 12950, 12953, 13091, 13114C, 13119, 13124, 13130, 13133, 12984, 12990, 12992, 12998, 13001, 13007, 13008, 13137, 13146A, 13151, 13163, 13187A, 13214, 13016, 13019, 13020, 13022T, 13028, 13031, 13034, 13226, 13244, 13250, 13256, 13258, 13259, 13260, 13049, 13067, 13070, 13072C, 13073, 13091, 13114C, 13261G, 13262, 13271, 13274, 13275A, 13290, 13119, 13124, 13130, 13133, 13137, 13146A, 13151, 13293, 13304C, 13316, 13319, 13323, 13343, 13163, 13187A, 13214, 13226, 13244, 13250, 13256, 13357, 13358G, 13371, 13382, 13400, 13425, 13258, 13259, 13260, 13261G, 13262, 13271, 13274, 13427, 13430, 13445, 13450T, 13457, 13477, 13275A, 13280, 13286, 13290, 13293, 13304C, 13316, 13478C, 13483, 13496, 13502, 13503, 13520, 13319, 13323, 13343, 13357, 13358G, 13371, 13382, 13523, 13532, 13535, 13548, 13551, 13582, 13400, 13425, 13427, 13430, 13445, 13450T, 13457, 13583C, 13597, 13675, 13680A, 13728, 13732, 13477, 13478C, 13483, 13496, 13502, 13503, 13520, 13753, 13759, 13800, 13810, 13813, 13843, 13846, 13523, 13532, 13535, 13548, 13551, 13582, 13583C, 13867, 15448A, 15449, 15450, 15451, 15974, 13597, 13675, 13680A, 13728, 13732, 13741, 13753, 15976, 15977, 16000, 16028, 16040, 16485 13756, 13759, 13800, 13810, 13813, 13843, 13846, 13867, 14746, 14873, 15004, 15220, 15448A, 15449, 15450, 15451, 15543, 15616, 15631, 15636, 15637, 15728, 15807, 15833, 15843, 15864, 15893, 15913, 15920, 15930, 15947, 15950, 15965, 15967, 15969, 15973, 15974, 15975, 15976, 15977, 15981, 15982, 15983, 16000, 16006, 16010, 16011, 16019, 16027, 16028, 16037, 16040, 16045, 16066, 16083, 16232, 16281, 16458, 16477, 16485, 16514

GU229280 Surplus of C 165, 177G, 179, 180-181d, 213, 1192, 1369, 1395+A, C:944, 1026, C:177G, 179, 180-181d, 1395+A, 2092, 2517, 2945, Wu,Y.P. and (Goat) mutations. 1850, 2092, 2208, 2517, 2886C, 2945, 3003, 3132, 1114, 3279, 5386, 5542, 6493, 6502, 6514, 6520, 6529, Ma,Y.H. 3195, 3279, 3294, 3469, 3600, 3771, 4570, 4627, 4708, 1118-1119d, 6577, 6637, 6706, 6736, 6808, 7053, 7109, 7112, Direct 4714, 4891, 4942, 5386, 5542, 5602, 5713, 5776, 6094, 6031, 6538, 7280, 7313, 7319, 7346, 7376, 7406A, 7421, 7427, Submission 6325, 6391, 6415, 6493, 6502, 6514, 6520, 6523, 6529, 7118, 7918, 7886, 8105, 8624, 10028, 10630T, 11386, 11771, 6577, 6637, 6706, 6736, 6808, 7053, 7109, 7112, 7280, 8114, 10107, 12155, 12192, 12252, 12257, 12266, 12277, 12278, 7313, 7319, 7346, 7376, 7406A, 7421, 7427, 7658, 11074, 12626, 12281C, 12287, 12290, 12293, 12299, 12300, 7840, 7886, 8056, 8079, 8105, 8265, 8301C, 8487, 12638, 12791, 12318, 12335, 12338, 12341, 12368C, 12377, 8624, 8852, 8960, 9062, 9112, 9206, 9347, 9548, 9600, 13157, 13292, 12392C, 12393, 12396, 12397, 12398A, 12399, 9827, 9995, 10028, 10303, 10357A, 10450, 10546, 15771, 15893, 12404, 12408, 12410, 12419, 12422, 12428, 12446, 10564, 10630T, 10639, 10951, 11062, 11128, 11257, 15930, 15981 12452, 12470T, 12476, 12484, 12530, 12531, 12533, 11386, 11569, 11771, 11957, 11969, 12146, 12155, 12536, 12537, 12557, 12579, 12590, 12593, 12594, 12192, 12252, 12257, 12266, 12277, 12278, 12281C, 12599, 12608, 12623, 12641, 12671, 12677, 12689, 12287, 12290, 12293, 12299, 12300, 12314, 12318, 12716, 12717, 12719, 12725, 12737, 12743, 12761, 12335, 12338, 12341, 12362, 12368C, 12377, 12380, 12762, 12763, 12779, 12793, 12800, 12801, 12812, 12383, 12386, 12392C, 12393, 12396, 12397, 12398A, 12824, 12836, 12851, 12878, 12881, 12884, 12899, 12399, 12404, 12408, 12410, 12419, 12422, 12428, 12927, 12932, 12950, 12953, 12984, 12990, 12992, 12446, 12452, 12470T, 12476, 12484, 12530, 12531, 12998, 13007, 13008, 13016, 13019, 13020, 13022T, 12533, 12536, 12537, 12539, 12557, 12579, 12590, 13028, 13031, 13049, 13067, 13070, 13072C, 12593, 12594, 12599, 12608, 12623, 12641, 12671, 13073, 13091, 13114C, 13119, 13124, 13130, 12677, 12689, 12716, 12717, 12719, 12725, 12737, 13133, 13137, 13146A, 13151, 13163, 13187A, 12743, 12761, 12762, 12763, 12779, 12793, 12800, 13214, 13226, 13244, 13250, 13256, 13258, 13259, 12801, 12812, 12824, 12836, 12851, 12878, 12881, 13260, 13261G, 13262, 13271, 13274, 13275A, 12884, 12899, 12927, 12932, 12950, 12953, 12984, 13280, 13286, 13290, 13293, 13304C, 13316, 12990, 12992, 12998, 13001, 13007, 13008, 13016, 13319, 13323, 13343, 13357, 13358G, 13371, 13019, 13020, 13022T, 13028, 13031, 13034, 13049, 13382, 13400, 13425, 13427, 13430, 13445, 13067, 13070, 13072C, 13073, 13091, 13114C, 13119, 13450T, 13457, 13477, 13483, 13496, 13503, 13520, 13124, 13130, 13133, 13137, 13146A, 13151, 13163, 13523, 13532, 13535, 13548, 13551, 13582, 13187A, 13214, 13226, 13244, 13250, 13256, 13258, 13583C, 13597, 13639, 13675, 13680A, 13728, 13259, 13260, 13261G, 13262, 13271, 13274, 13275A, 13732, 13753, 13759, 13768, 13792, 13800, 13810, 13280, 13286, 13290, 13293, 13304C, 13316, 13319, 13813, 13843, 13846, 13867, 14163, 15265, 15515, 13323, 13343, 13357, 13358G, 13371, 13382, 13400, 15842, 15976, 15992, 16011, 16028, 16054, 16430, 13425, 13427, 13430, 13445, 13450T, 13457, 13477, 16494 13483, 13496, 13502, 13503, 13520, 13523, 13532, 13535, 13548, 13551, 13582, 13583C, 13597, 13639, 13675, 13680A, 13728, 13732, 13741, 13753, 13756, 13759, 13768, 13792, 13800, 13810, 13813, 13843, 13846, 13867, 14044, 14163, 14290, 14386, 14518, 14527, 14746, 15004, 15053, 15265, 15515, 15543, 15554, 15616, 15631, 15636, 15637, 15662, 15675, 15689, 15699, 15728, 15744, 15763, 15797, 15807, 15822, 15842, 15843, 15862, 15864, 15866, 15870, 15909, 15920, 15950, 15969, 15973, 15974, 15975, 15976, 15983, 15984, 15992, 15994, 16000, 16003, 16006, 16010, 16011, 16019, 16022, 16026, 16027, 16028, 16038, 16040, 16043, 16045, 16054, 16066, 16084C, 16150, 16151, 16232, 16325, 16363, 16376, 16430, 16440, 16448, 16460, 16477, 16494, 16495, 16514

GU229281 Surplus of A2a1a 177G, 179, 180-181d, 294, 1120A, 1395+A, 2119, 2639, A2a1a:15811 A2a1a:177G, 179, 180-181d, 294, 1120A, 1395+A, Wu,Y.P. and (Goat) mutations. 3195, 3740, 4277, 4942, 5085, 5950, 6334G, 6523, 2119, 2639, 3195, 3740, 4277, 5085, 5950, 6334G, Ma,Y.H. 6575, 7091, 7109, 7190, 7464, 7840, 8056, 8475, 8897, 6575, 7091, 7109, 7190, 7464, 7840, 8056, 8475, Direct 8969, 10002, 10028, 11062, 11128, 11173, 11198, 8897, 8969, 10002, 11173, 11198, 11308, 11323, Submission 11308, 11323, 11377, 11470, 11488, 11492, 11497, 11377, 11470, 11488, 11492, 11497, 11503, 11521, 11503, 11521, 11809, 12002, 12006, 12035, 12047, 11809, 12002, 12006, 12035, 12047, 12068, 12098, 12068, 12098, 12104, 12107, 12137, 12146, 12155, 12104, 12107, 12137, 12146, 12155, 12161, 12161, 12188A, 12209, 12221, 12252, 12257, 12266, 12188A, 12209, 12221, 12252, 12257, 12266, 12277, 12278, 12281C, 12287, 12290, 12293, 12299, 12277, 12278, 12281C, 12287, 12290, 12293, 12300, 12314, 12318, 12335, 12338, 12341, 12362, 12299, 12300, 12314, 12318, 12335, 12338, 12341, 12368C, 12377, 12380, 12383, 12386, 12392C, 12393, 12362, 12368C, 12377, 12383, 12386, 12392C, 12396, 12397, 12398A, 12399, 12404, 12408, 12410, 12393, 12396, 12397, 12398A, 12399, 12404, 12419, 12422, 12428, 12446, 12452, 12470T, 12476, 12408, 12410, 12419, 12422, 12428, 12446, 12452, 12484, 12530, 12531, 12533, 12536, 12537, 12539, 12470T, 12476, 12484, 12530, 12531, 12533, 12536, 12557, 12579, 12590, 12593, 12594, 12599, 12608, 12537, 12539, 12557, 12579, 12590, 12593, 12594, 12623, 12641, 12671, 12677, 12689, 12716, 12717, 12599, 12608, 12623, 12641, 12671, 12677, 12689, 12719, 12725, 12743, 12761, 12762, 12763, 12779, 12716, 12717, 12719, 12725, 12743, 12761, 12762, 12793, 12800, 12801, 12812, 12824, 12836, 12840, 12763, 12779, 12793, 12800, 12801, 12812, 12824, 12851, 12878, 12881, 12884, 12899, 12927, 12932, 12836, 12840, 12851, 12878, 12881, 12884, 12899, 12950, 12953, 12984, 12990, 12992, 12998, 13001, 12927, 12932, 12950, 12953, 12984, 12990, 12992, 13007, 13008, 13016, 13019, 13020, 13022T, 13028, 12998, 13001, 13007, 13008, 13016, 13019, 13020, 13031, 13034, 13049, 13067, 13070, 13072C, 13073, 13022T, 13028, 13031, 13049, 13067, 13070, 13091, 13114C, 13119, 13124, 13130, 13133, 13137, 13072C, 13073, 13091, 13114C, 13119, 13124, 13146A, 13151, 13163, 13187A, 13214, 13226, 13250, 13130, 13133, 13137, 13146A, 13151, 13163, 13256, 13258, 13259, 13260, 13261G, 13262, 13271, 13187A, 13214, 13226, 13250, 13256, 13258, 13274, 13275A, 13280, 13286, 13290, 13293, 13304C, 13259, 13260, 13261G, 13262, 13271, 13274, 13316, 13319, 13323, 13343, 13357, 13358G, 13371, 13275A, 13280, 13286, 13290, 13293, 13304C, 13382, 13400, 13425, 13427, 13431, 13439, 13445, 13316, 13319, 13323, 13343, 13357, 13358G, 13450T, 13457, 13477, 13483, 13502, 13503, 13508, 13371, 13382, 13400, 13425, 13427, 13431, 13439, 13514, 13523, 13526, 13535, 13548, 13551, 13582, 13445, 13450T, 13457, 13477, 13483, 13502, 13503, 13597, 13639, 13675, 13680A, 13728, 13732, 13741, 13508, 13514, 13523, 13526, 13535, 13548, 13551, 13753, 13756, 13759, 13768, 13792, 13800, 13810, 13582, 13597, 13639, 13675, 13680A, 13728, 13813, 13843, 13846, 13867, 13894, 14317, 14443, 13732, 13741, 13753, 13756, 13759, 13768, 13792, 14500, 14746, 15238, 15289, 15543, 15616, 15631, 13800, 13810, 13813, 13843, 13846, 13867, 13894, 15636, 15771, 15807, 15810, 15818, 15873, 15911, 14317, 14443, 14500, 14746, 15238, 15289, 15543, 15913, 15920, 15930, 15969, 15973, 15978, 15983, 15616, 15631, 15636, 15771, 15807, 15810, 15818, 15992, 16000, 16006, 16019, 16027, 16028, 16038, 15873, 15911, 15913, 15920, 15930, 15969, 15973, 16048, 16062, 16066, 16435, 16460, 16470, 16472, 15978, 15983, 15992, 16006, 16019, 16027, 16038, 16477, 16504d, 16514, 16588 16048, 16062, 16460, 16470, 16472, 16477, 16504d, 16514, 16588 AY584828( Surplus of ABC, C, C2 358d, 1095, 1096A, 1098, 1099, 1146, 1147, 1224C, ABC:158, 356, ABC:358d, 1095, 1096A, 1098, 1099, 1146, 1147, Han,S.-H., Horse and mutations. 1253, 1267, 1335, 1382, 1451, 1493, 1526, 1546, 1851, 1387d, 2788, 1224C, 1253, 1267, 1335, 1382, 1451, 1493, 1526, Kang,M.-C., Przewalski' 2104, 2157, 2159, 2172, 2188, 2227+T, 2339A, 2803A, 10214, 15647, 1546, 1851, 2104, 2157, 2159, 2172, 2188, 2227+T, Oh,J.-H., s horse) 3205, 3800, 4062, 4583, 4884, 4993, 5239+A, 5277+A, 15823; C:158, 2339A, 2803A, 3205, 3800, 4583, 4884, 4993, Song,J.-H., 5500, 5546, 5637G, 6076, 6784, 6850, 6908, 6912, 356, 957, 1387d, 5239+A, 5277+A, 5500, 5546, 5637G, 6076, 6850, Oh,Y.-S., 7001, 7008A, 7722A, 9239, 9248C, 9664, 9734T, 2238, 2788, 6908, 6912, 7008A, 7722A, 9248C, 9664, 9734T, Kim,J.-H.,Jun 10123C, 10124G, 10427, 10441T, 10895, 11046, 11129, 4599, 7942, 10123C, 10124G, 10427, 10441T, 10895, 11046, g,Y.-H. and 11240, 11543, 12921, 12995, 13079, 13086G, 13411, 10214, 10217, 11129, 12921, 12995, 13079, 13086G, 13411, Oh,M.-Y. 13555A, 13685, 13709, 13742G, 13996T, 14252, 14656, 12352, 15647, 13555A, 13685, 13709, 13742G, 13996T, 14252, Unpublished 15274, 15385+T, 15404, 15406, 15492, 15535, 15569C, 15823, 15953, 14656, 15274, 15385+T, 15404, 15406, 15535, 15594, 15599, 15615T, 15659, 15660C, 15661, 15662, 15971, 16110; 15569C, 15594, 15615T, 15659, 15660C, 15661, 15664, 15665, 15700G, 15708G, 15717, 15768, 15776T, C2:158, 267, 356, 15662, 15664, 15665, 15700G, 15708G, 15768, 15804, 15824, 15853, 15854, 15855, 15867, 15868, 957, 1387d, 15776T, 15804, 15824, 15853, 15854, 15855, 15868, 16034C, 16089, 16268-16331d, 16368, 16388A, 2238, 2788, 16034C, 16089, 16268-16331d, 16388A, 16393A, 16393A, 16396C, 16404, 16405A, 16406C, 16429T, 4599, 7942, 16396C, 16404, 16405A, 16406C, 16429T, 16430G, 16430G, 16448T 10214, 10217, 16448T; C:358d, 1095, 1096A, 1098, 1099, 1146, 12352, 15647, 1147, 1224C, 1253, 1267, 1335, 1382, 1451, 1493, 15823, 15953, 1526, 1546, 1851, 2104, 2157, 2159, 2172, 2188, 15971, 16110 2227+T, 2339A, 2803A, 3205, 4583, 5239+A, 5277+A, 5546, 5637G, 6850, 6908, 6912, 7008A, 7722A, 9248C, 9734T, 10123C, 10124G, 10427, 10441T, 10895, 12921, 12995, 13086G, 13411, 13555A, 13685, 13709, 13742G, 13996T, 14252, 14656, 15274, 15385+T, 15404, 15406, 15535, 15569C, 15594, 15615T, 15659, 15660C, 15661, 15662, 15664, 15665, 15700G, 15708G, 15768, 15776T, 15804, 15824, 15853, 15854, 15855, 15868, 16034C, 16089, 16268-16331d, 16388A, 16393A, 16396C, 16404, 16405A, 16406C, 16429T, 16430G, 16448T; C2:358d, 1095, 1096A, 1098, 1099, 1146, 1147, 1224C, 1253, 1267, 1335, 1382, 1451, 1493, 1526, 1546, 1851, 2104, 2157, 2159, 2172, 2188, 2227+T, 2339A, 2803A, 3205, 4583, 5239+A, 5277+A, 5546, 5637G, 6850, 6908, 6912, 7008A, 7722A, 9248C, 9734T, 10123C, 10124G, 10427, 10441T, 10895, 12921, 12995, 13086G, 13411, 13555A, 13685, 13709, 13742G, 13996T, 14252, 14656, 15274, 15385+T, 15404, 15406, 15535, 15569C, 15615T, 15659, 15660C, 15661, 15662, 15664, 15665, 15700G, 15708G, 15768, 15776T, 15804, 15824, 15853, 15854, 15855, 15868, 16034C, 16089, 16268-16331d, 16388A, 16393A, 16396C, 16404, 16405A, 16406C, 16429T, 16430G, 16448T

AP013080( Artificial AB, A1a 158, 222, 356, 382, 387, 416, 5623, 5830, 5881, 5884, AB:4062, 15492, AB:222, 382, 387, 416, 5623, 5830, 5881, 5884, Wada,K. and Horse and recombination: 6004, 6784, 10062, 11165, 11210, 11240, 11543, 15647, 15717, 6004, 10062, 11165, 11210, 11543, 11552, Yokohama,M Przewalski' missing 11552, 16268-16331d, 16368 15823 16268-16331d; A1a:158, 222, 356, 382, 387, 416, . s horse) mutations 5623, 5830, 5881, 5884, 6004, 6784, 10062, 11165, Unpublished 15492,15838 11210, 11240, 11543, 11552, 16268-16331d, 16368 of haplogroup AB; mis-added mutations 222, 382, 387, 416, 5623, 5830, 5881, 5884, 6004, 10062, 11165, 11210, 11543, 11552 from haplogroup G. AP013082( Artificial G3a 158, 222, 356, 382, 387, 416, 1387d, 2788, 2940, 3053, G3a:13502, G3a:10739, 14995, 15171, 15313, 16127, 16128 Wada,K. and Horse and recombination: 3576, 4062, 4646, 4669, 4830, 5498, 5830, 5881, 5884, 14350, 14626, Yokohama,M Przewalski' missing 6004, 6307, 6688, 6784, 7001, 7687, 8005, 8037, 9145, 14734 . s horse) mutations 9239, 9402, 9669, 9741A, 10214, 10376, 10471, 10739, Unpublished 13502, 14350, 11165, 11240, 11552, 11842, 12767, 12860, 13049, 14626, 14734 13223, 13333, 14995, 15171, 15313, 15492, 15539, of 15594, 15599, 15632, 15647, 15663, 15700, 15717, haplogroup 15867, 16028, 16110, 16127, 16128, 16368 G3a; mis-added mutations 14995, 15313 from haplogroup L. AP013087( Artificial L3a 77, 158, 356, 961, 1375, 1387d, 2788, 2899, 3517, L3a:10421, L3a:11315, 13502, 13761, 14038, 14554, 16404d, Wada,K. and Horse and recombination: 3942, 4062, 4536, 4646, 4669, 5527, 5815, 5884, 6004, 10613, 12119, 16560+C Yokohama,M Przewalski' missing 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 12200, 13520, . s horse) mutations 8319, 8358, 8565, 9239, 9951, 10110, 10214, 10292, 14803, 14995, Unpublished 10421, 10613, 10376, 11240, 11315, 11543, 11693, 11842, 11879, 15313 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13502, 13761, 13520, 14803, 14038, 14554, 15491, 15492, 15493, 15531, 15582, 14995, 15313 15599, 15600, 15601, 15646, 15717, 15768, 15867, of 15868, 15953, 15971, 16065, 16100, 16368, 16404d, haplogroup 16553, 16560+C, 16626 L3a; mis-added mutations 13502, 13761, 14038, 14554 from haplogroup I1.

AP013100( Artificial I2a1a 158, 356, 1387d, 1587, 1791, 2614, 2770, 2788, 4062, I2a1a:5210, I2a1a:5210d, 5815, 16127, 16128, 16284-16331d Wada,K. and Horse and recombination: 4063, 4392, 4646, 4669, 4830, 5061, 5210d, 5815, 6175, 6247 Yokohama,M Przewalski' missing 5884, 6004, 6307, 6784, 7001, 8005, 8358, 8379, 8792, . s horse) mutations 9239, 9694, 9948, 10083, 10214, 10238, 10376, 11240, Unpublished 16175, 6247 of 11543, 11827, 11842, 12404, 12443, 12683, 12767, haplogroup 13049, 13333, 13502, 13761, 14554, 15492, 15535, I2a1a; 15581, 15582, 15599, 15647, 15706, 15717, 15768, mis-added 15823, 15867, 15971, 16077, 16110, 16119, 16127, mutations 16128, 16284-16331d, 16368, 16436 5815 from haplogroup L. AP013101( Artificial A1a, A1b 5061, 6784, 9477, 16110, 16292-16331d A1b:15492, A1a:5061, 6784, 9477, 16110, 16292-16331d; Wada,K. and Horse and recombination: 15823 A1b:5061, 9477, 16292-16331d Yokohama,M Przewalski' missing . s horse) mutations Unpublished 15492, 15823 of haplogroup A1b. EF597512( Artificial N2, N2a 158, 222, 356, 416, 961, 1387d, 2788, 2940, 3053, N2:1609T, 2339A, N2:222, 416, 2940, 3053, 3576, 4830, 5498, 5669, Xu,S., Horse and recombination: 3576, 4062, 4526, 4536, 4605, 4646, 4669, 4830, 4917, 2802, 3070, 3475, 5830, 5881, 6457A, 7229C, 7303C, 8037, 8383G, Luosang,J., Przewalski' missing 5498, 5669, 5830, 5881, 5884, 6004, 6307, 6457A, 3557, 3800, 10893A, 11165, 11552, 12003C, 12024G, 12277G, Hua,S., He,J., s horse) mutations 6712, 6784, 7001, 7229C, 7303C, 7432, 8005, 8037, 4898, 5527, 5827, 12860, 14270, 15582, 15695G, 16127, 16128, Ciren,A., 1609T, 2339A, 8383G, 9071, 9086, 9239, 9402, 9540, 9918, 10110, 6076, 7666, 7900, 16268-16331d; N2a:222, 416, 2940, 3053, 3576, Wang,W., 2802, 3070, 10173, 10214, 10292, 10376, 10404, 10448, 10460, 8043, 8076, 4830, 5498, 5669, 5830, 5881, 6457A, 7229C, Tong,X., 3475, 3557, 10517, 10646, 10893A, 11165, 11240, 11543, 11552, 8150, 8175, 7303C, 8037, 8383G, 10893A, 11165, 11552, Liang,Y., 3800, 4898, 11842, 12003C, 12024G, 12277G, 12332, 12674, 8238, 8280, 12003C, 12024G, 12277G, 12860, 14270, 15695G, Wang,J. and 5527, 5827, 12767, 12860, 13049, 13333, 13356, 13502, 13567, 8358, 8556T, 16127, 16128, 16268-16331d Zheng,X. 6076, 7666, 13615, 13629, 13720, 13920, 13933, 14270, 14422, 8565, 8798, Genet 7900, 8043, 14626, 14671, 15492, 15582, 15598, 15599, 15695G, 9332, 10859, Genomics 34 8076, 8150, 15717, 15768, 15803, 15824, 15835, 15866, 15953, 11394, 11492, (8), 720-729 8175, 8238, 16004, 16065, 16110, 16118, 16127, 16128, 11879, 11966, (2007) 8280, 8358, 16268-16331d, 16368, 16540A, 16543, 16556, 16626 12029, 12095, 8556T, 8565, 13100, 14803, 8798, 9332, 14815, 15052A, 10859, 11394, 15133, 15342, 11492, 11879, 16108; 11966, 12029, N2a:1609T, 12095, 13100, 2339A, 2802, 14803, 14815, 3070, 3475, 3557, 15052A, 3800, 4898, 15133, 15342, 5527, 5827, 6076, 16108 of 7666, 7900, haplogroup 8043, 8076, N2; mis-added 8150, 8175, mutations 222, 8238, 8280, 416, 3053, 8358, 8556T, 3576, 4830, 8565, 8798, 5498, 5669, 9332, 10859, 5830, 5881, 11384, 11394, 8037, 11165, 11492, 11879, 11552, 12860 11966, 12029, from 12095, 13100, haplogroup 14803, 14815, G1. 15052A, 15133, 15342, 16108

EU939445 Surplus of H-I 158, 302, 341, 356, 1258, 1262d, 1293d, 1387d, 1546, H-I:7001, 13761, H-I:302, 341, 1258, 1262d, 1293d, 1546, 1668, Jiang,Q., (Horse and mutations. 1668, 2788, 3064, 3281, 4062, 4182, 4646, 4669, 4830, 15647, 15823 3064, 3281, 4182, 5272, 6076, 6103T, 6107C, Wei,Y., Przewalski' 5272, 5884, 6004, 6076, 6103T, 6107C, 6109A, 6110, 6109A, 6110, 6111, 6112A, 6113C, 6121, 6122A, Huang,Y., s horse) 6111, 6112A, 6113C, 6121, 6122A, 6123A, 6124T, 6123A, 6124T, 6127, 6565, 6835, 7243, 7294, 8071, Jiang,H., 6127, 6307, 6565, 6784, 6835, 7243, 7294, 8005, 8071, 8081C, 8174, 8358, 8361, 8556T, 8565, 9209, 9775, Guo,Y., 8081C, 8174, 8358, 8361, 8556T, 8565, 9209, 9239, 10731, 10914, 11090, 11101G, 11127G, 11137, Lan,G. and 9775, 10083, 10214, 10376, 10731, 10914, 11090, 11175, 11200, 11254A, 11260, 11263G, 11299, Liao,D.J. Mol 11101G, 11127G, 11137, 11175, 11200, 11240, 11301G, 11325A, 11342G, 11385G, 11387, 11640G, Biol Rep. 38 11254A, 11260, 11263G, 11299, 11301G, 11325A, 11989, 12044G, 12372, 12831T, 13177, 13232, (1), 593-599 11342G, 11385G, 11387, 11543, 11640G, 11842, 14395, 14551, 14803, 15297, 15388, 15389, (2007). 11989, 12044G, 12372, 12767, 12831T, 13049, 13177, 15395+G, 15452d, 15774, 15804, 15824, 15868, 13232, 13333, 13502, 14395, 14551, 14803, 15297, 16068, 16108, 16127, 16128 15388, 15389, 15395+G, 15452d, 15492, 15582, 15599, 15717, 15768, 15774, 15804, 15824, 15867, 15868, 16068, 16108, 16110, 16127, 16128, 16368 KC202960( Artificial G2 158, 356, 382, 416, 1387d, 2788, 3053, 3576, 4062, G2:222, 387, G2:8286, 8361, 9304, 12161, 13118, 13589, 16077 Qi,A., Horse and recombination: 4646, 4669, 4830, 5498, 5830, 5881, 5884, 6004, 6307, 2940, 15647, Davie,A., Przewalski' missing 6688, 6784, 7001, 8005, 8037, 8286, 8361, 9195, 9239, 15663, 16110, Wen,L., s horse) mutations 222, 9304, 9402, 9669, 9741A, 10214, 10376, 10471, 11165, Qiu,M., 387, 2940, 11240, 11543, 11552, 11842, 12161, 12767, 12860, Jiang,F., 15647, 15663, 13049, 13118, 13223, 13333, 13502, 13589, 14350, Pacey,T., 16110 of 14626, 14734, 15492, 15539, 15594, 15599, 15632, Twenke,B.,Z haplogroup G. 15700, 15717, 15867, 16077, 16368 hang,Y., Zhou,S. and Liu,B. Unpublished KC202961( Artificial G2 158, 356, 1387d, 2788, 2940, 3053, 3576, 4062, 4646, G2:222, 382, 387, G2:8286, 8361, 12161, 13118, 13589, 15582, 15773 Qi,A., Horse and recombination: 4669, 4830, 5498, 5830, 5881, 5884, 6004, 6307, 6688, 416, 15539, Davie,A., Przewalski' missing 6784, 7001, 8005, 8037, 8286, 8361, 9195, 9239, 9402, 15663, 16110 Wen,L., s horse) mutations 222, 9669, 9741A, 10214, 10376, 10471, 11165, 11240, Qiu,M., 382, 387, 416, 11543, 11552, 11842, 12161, 12767, 12860, 13049, Jiang,F., 15539, 15663, 13118, 13223, 13333, 13502, 13589, 14350, 14626, Pacey,T., 16110 of 14734, 15492, 15582, 15594, 15599, 15632, 15647, Twenke,B.,Z haplogroup 15700, 15717, 15773, 15867, 16368 hang,Y., G2; mis-added Zhou,S. and mutations Liu,B. 15773 from Unpublished haplogroup R. KC202962( Artificial G2 158, 287, 356, 575, 961, 1387d, 1696, 2788, 3070, G2:222, 382, 387, G2:287, 575, 961, 1696, 3070, 8286, 8361, 9304, Qi,A., Horse and recombination: 3576, 4062, 4646, 4669, 4830, 5498, 5830, 5881, 5884, 416, 2940, 3053, 12161, 13118, 13589, 15142, 15582, 16077 Davie,A., Przewalski' missing 6004, 6307, 6688, 6784, 7001, 8005, 8037, 8286, 8361, 15539, 15663, Wen,L., s horse) mutations 222, 9195, 9239, 9304, 9402, 9669, 9741A, 10214, 10376, 16110 Qiu,M., 382, 387, 416, 10471, 11165, 11240, 11543, 11552, 11842, 12161, Jiang,F., 2940, 3053, 12767, 12860, 13049, 13118, 13223, 13333, 13502, Pacey,T., 15539, 13589, 14350, 14626, 14734, 15142, 15492, 15582, Twenke,B.,Z 15663,16110 15594, 15599, 15632, 15647, 15700, 15717, 15867, hang,Y., of 16077, 16368 Zhou,S. and haplogroup Liu,B. G2; mis-added Unpublished mutations 287, 3070, 15142 from haplogroup A-Q. KC202964( Artificial G2 158, 287, 356, 575, 961, 1387d, 1696, 2788, 3070, G2:222, 382, 387, G2:287, 575, 961, 1696, 3070, 8286, 8361, 9304, Qi,A., Horse and recombination: 3576, 4062, 4646, 4669, 4830, 5498, 5830, 5881, 5884, 416, 2940, 3053, 12161, 13118, 13589, 15020, 15142, 15582, 15768, Davie,A., Przewalski' missing 6004, 6307, 6688, 6784, 7001, 8005, 8037, 8286, 8361, 15539, 15663, 15773, 15953 Wen,L., s horse) mutations 222, 9195, 9239, 9304, 9402, 9669, 9741A, 10214, 10376, 16110 Qiu,M., 382, 387, 416, 10471, 11165, 11240, 11543, 11552, 11842, 12161, Jiang,F., 2940, 3053, 12767, 12860, 13049, 13118, 13223, 13333, 13502, Pacey,T., 15539, 15663, 13589, 14350, 14626, 14734, 15020, 15142, 15492, Twenke,B.,Z 16110 of 15582, 15594, 15599, 15632, 15647, 15700, 15717, hang,Y., haplogroup 15768, 15773, 15867, 15953, 16368 Zhou,S. and G2; mis-added Liu,B. mutations 287, Unpublished 3070, 15142 from haplogroup A-Q. KC202983( Artificial I2 158, 356, 1387d, 1587, 1791, 2614, 2770, 2788, 4062, I2:5210, 5217d, I2:5210d, 10173, 10292, 10448, 10460, 10517, Qi,A., Horse and recombination: 4063, 4392, 4646, 4669, 4830, 5061, 5210d, 5884, 9694, 9948, 11879, 11966, 14626, 15647 Davie,A., Przewalski' missing 6004, 6175, 6247, 6307, 6784, 7001, 8005, 8358, 8379, 10238, 11827, Wen,L., s horse) mutations 8792, 9239, 10083, 10173, 10214, 10292, 10376, 12443, 12683, Qiu,M., 9694, 9948, 10448, 10460, 10517, 11240, 11543, 11842, 11879, 14554 Jiang,F., 10238, 11827, 11966, 12404, 12767, 13049, 13333, 13502, 13761, Pacey,T., 12443, 12683, 14626, 15492, 15535, 15581, 15582, 15599, 15647, Twenke,B.,Z 14554 of 15706, 15717, 15768, 15823, 15867, 15971, 16077, hang,Y., haplogroup I2; 16110, 16119, 16127, 16128, 16368, 16436 Zhou,S. and mis-added Liu,B. mutations Unpublished 10292, 10448, 10646, 10517, 11966 from haplogroup N. KC202991( Artificial L2b 158, 356, 961, 1375, 1387d, 2607, 2788, 2899, 3517, L2b:12119, L2b:16108, 16268-16331d Qi,A., Horse and recombination: 3942, 4062, 4536, 4646, 4669, 5527, 5815, 5884, 6004, 12200, 16065, Davie,A., Przewalski' missing 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8199, 16368 Wen,L., s horse) mutations 8301, 8319, 8358, 8403, 8565, 9239, 9951, 10110, Qiu,M., 12119, 12200, 10214, 10292, 10376, 10421, 10613, 11240, 11543, Jiang,F., 16065, 16368 11693, 11842, 11879, 12767, 12896, 12950, 13049, Pacey,T., of 13333, 13520, 14803, 14995, 15313, 15491, 15492, Twenke,B.,Z haplogroup 15493, 15531, 15582, 15600, 15646, 15717, 15768, hang,Y., L2b. 15867, 15868, 15953, 15971, 16100, 16108, Zhou,S. and 16268-16331d, 16626 Liu,B. Unpublished KC202997( Artificial L 158, 356, 961, 1375, 1387d, 1459, 2788, 2899, 3517, L:10421, 10613, L:1459, 8307, 11827, 12404, 12443, 12683, 13502, Qi,A., Horse and recombination: 3942, 4062, 4536, 4646, 4669, 5527, 5815, 5884, 6004, 11693, 11879, 14659, 15601, 16110, 16404d Davie,A., Przewalski' missing 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 12119, 12200, Wen,L., s horse) mutations 8307, 8319, 8358, 8565, 9239, 9951, 10110, 10214, 12896, 13520, Qiu,M., 10421, 10613, 10292, 10376, 11240, 11543, 11827, 11842, 12404, 14803, 15313 Jiang,F., 11693, 11879, 12443, 12683, 12767, 12950, 13049, 13333, 13502, Pacey,T., 12119, 12200, 14659, 14995, 15491, 15492, 15493, 15531, 15582, Twenke,B.,Z 12896, 13520, 15599, 15600, 15601, 15646, 15717, 15768, 15867, hang,Y., 14803, 15313 15868, 15953, 15971, 16065, 16100, 16110, 16368, Zhou,S. and of 16404d, 16626 Liu,B. haplogroup L; Unpublished mis-added mutations 11827, 12443, 12683 from haplogroup N. KC203000( Artificial L3a 77, 158, 356, 1375, 1387d, 2788, 2899, 3220, 3517, L3a:961, 9951, L3a:3220, 11084, 12404, 13502, 16108, 16404d, Qi,A., Horse and recombination: 3942, 4062, 4536, 4646, 4669, 5527, 5815, 5884, 6004, 10613, 11693, 16632d Davie,A., Przewalski' missing 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 12119, 12200, Wen,L., s horse) mutations 961, 8319, 8358, 8565, 9239, 10110, 10214, 10292, 10376, 12896, 13520 Qiu,M., 9951, 10613, 10421, 11084, 11240, 11543, 11842, 11879, 12404, Jiang,F., 11693, 12119, 12767, 12950, 13049, 13333, 13502, 14803, 14995, Pacey,T., 12200, 12896, 15313, 15491, 15492, 15493, 15531, 15582, 15599, Twenke,B.,Z 13520 of 15600, 15601, 15646, 15717, 15768, 15867, 15868, hang,Y., haplogroup 15953, 15971, 16065, 16100, 16108, 16368, 16404d, Zhou,S. and L3a. 16553, 16626, 16632d Liu,B. Unpublished KC203007( Artificial L2 158, 356, 961, 1375, 1387d, 2607, 2788, 2899, 3517, L2:8403, 15313, L2:3727, 10087, 15824, 16108, 16404d Qi,A., Horse and recombination: 3727, 3942, 4062, 4536, 4646, 4669, 5527, 5815, 5884, 15531, 15971, Davie,A., Przewalski' missing 6004, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 16100 Wen,L., s horse) mutations 8301, 8319, 8358, 8565, 9239, 9951, 10087, 10110, Qiu,M., 8403, 15313, 10214, 10292, 10376, 10421, 10613, 11240, 11543, Jiang,F., 15531, 15971, 11693, 11842, 11879, 12119, 12200, 12767, 12896, Pacey,T., 16100 of 12950, 13049, 13333, 13520, 14803, 14995, 15491, Twenke,B.,Z haplogroup L2. 15492, 15493, 15582, 15600, 15646, 15717, 15768, hang,Y., 15824, 15867, 15868, 15953, 16065, 16108, 16368, Zhou,S. and 16404d, 16626 Liu,B. Unpublished KC203011( Artificial L 158, 356, 961, 1375, 1387d, 1459, 2788, 2899, 3517, L:15867, 15868, L:1459, 8307, 12314, 14659, 15601, 16404d Qi,A., Horse and recombination: 3942, 4062, 4536, 4646, 4669, 5527, 5815, 5884, 6004, 15953, 15971, Davie,A., Przewalski' missing 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 16065, 16100 Wen,L., s horse) mutations 8307, 8319, 8358, 8565, 9239, 9951, 10110, 10214, Qiu,M., 15867, 15868, 10292, 10376, 10421, 10613, 11240, 11543, 11693, Jiang,F., 15953, 15971, 11842, 11879, 12119, 12200, 12314, 12767, 12896, Pacey,T., 16065, 16100 12950, 13049, 13333, 13520, 14659, 14803, 14995, Twenke,B.,Z of 15313, 15491, 15492, 15493, 15531, 15582, 15599, hang,Y., haplogroup L. 15600, 15601, 15646, 15717, 15768, 16368, 16404d, Zhou,S. and 16626 Liu,B. Unpublished KC203015( Artificial L 158, 356, 961, 1375, 1387d, 1459, 2788, 2899, 3517, L:15867, 15868, L:1459, 8307, 12314, 14659, 15601 Qi,A., Horse and recombination: 3942, 4062, 4536, 4646, 4669, 5527, 5815, 5884, 6004, 15953, 15971, Davie,A., Przewalski' missing 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 16065, 16100, Wen,L., s horse) mutations 8307, 8319, 8358, 8565, 9239, 9951, 10110, 10214, 16368, 16626 Qiu,M., 15867, 15868, 10292, 10376, 10421, 10613, 11240, 11543, 11693, Jiang,F., 15953, 15971, 11842, 11879, 12119, 12200, 12314, 12767, 12896, Pacey,T., 16065, 12950, 13049, 13333, 13520, 14659, 14803, 14995, Twenke,B.,Z 16100,16368, 15313, 15491, 15492, 15493, 15531, 15582, 15599, hang,Y., 16626 of 15600, 15601, 15646, 15717, 15768 Zhou,S. and haplogroup L. Liu,B. Unpublished KC203019( Artificial L 158, 356, 961, 1375, 1387d, 1459, 2788, 2899, 3517, L:8319, 8358 L:1459, 14335, 14659, 16133, 16141, 16317 Qi,A., Horse and recombination: 3942, 4062, 4536, 4646, 4669, 5527, 5815, 5884, 6004, Davie,A., Przewalski' missing 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, Wen,L., s horse) mutations 8565, 9239, 9951, 10110, 10214, 10292, 10376, 10421, Qiu,M., 8319, 8358 of 10613, 11240, 11543, 11693, 11842, 11879, 12119, Jiang,F., haplogroup L. 12200, 12767, 12896, 12950, 13049, 13333, 13520, Pacey,T., 14335, 14659, 14803, 14995, 15313, 15491, 15492, Twenke,B.,Z 15493, 15531, 15582, 15599, 15600, 15646, 15717, hang,Y., 15768, 15867, 15868, 15953, 15971, 16065, 16100, Zhou,S. and 16133, 16141, 16317, 16368, 16626 Liu,B. Unpublished KC203022( Artificial M 158, 356, 427, 961, 1387d, 2788, 3070, 3100, 3475, M:1609T, 2339A, M:11848, 15823, 15867, 15971, 16110, 16119 Qi,A., Horse and recombination: 3800, 4062, 4526, 4536, 4599G, 4605, 4646, 4669, 15342, 15656, Davie,A., Przewalski' missing 4898, 5103, 5527, 5827, 5884, 6004, 6076, 6307, 6712, 15803, 15824, Wen,L., s horse) mutations 6784, 7001, 7432, 7666, 7900, 8005, 8043, 8076, 8150, 15866, 15953, Qiu,M., 1609T, 2339A, 8175, 8238, 8358, 8556T, 8565, 8798, 9086, 9332, 16065, 16118 Jiang,F., 15342, 15656, 9540, 10110, 10173, 10214, 10292, 10376, 10448, Pacey,T., 15803, 15824, 10460, 10646, 10859, 11240, 11394, 11492, 11543, Twenke,B.,Z 15866, 15953, 11842, 11848, 11879, 11966, 12029, 12095, 12332, hang,Y., 16065, 16118 12767, 13049, 13100, 13333, 13356, 13502, 13615, Zhou,S. and of 13629, 13720, 13920, 13933, 14422, 14626, 14671, Liu,B. haplogroup M. 14803, 14815, 15052A, 15133, 15492, 15599, 15614, Unpublished 15717, 15768, 15823, 15867, 15971, 16077, 16110, 16119, 16127, 16128, 16368, 16540A, 16543, 16556, 16626 KC203028( Artificial N2a1 158, 356, 961, 1387d, 1609T, 2339A, 2788, 2802, 3070, N2a1:6076, N2a1:16127, 16128 Qi,A., Horse and recombination: 3475, 3557, 3800, 4062, 4428, 4526, 4536, 4605, 4646, 12029, 12095, Davie,A., Przewalski' missing 4669, 4898, 4917, 5527, 5827, 5884, 6004, 6307, 6712, 14815, 15052A, Wen,L., s horse) mutations 6784, 7001, 7432, 7666, 7900, 8005, 8043, 8076, 8150, 15133, 16368, Qiu,M., 6076, 12029, 8175, 8238, 8280, 8358, 8556T, 8565, 8798, 9071, 16540A, 16543, Jiang,F., 12095, 14815, 9086, 9239, 9332, 9402, 9540, 9918, 10110, 10173, 16556, 16626 Pacey,T., 15052A, 10214, 10292, 10376, 10404, 10448, 10460, 10517, Twenke,B.,Z 15133, 16368, 10646, 10859, 11240, 11384, 11394, 11492, 11543, hang,Y., 16540A, 11842, 11879, 11966, 12332, 12674, 12767, 13049, Zhou,S. and 16543, 16556, 13100, 13333, 13335, 13356, 13502, 13567, 13615, Liu,B. 16626 of 13629, 13720, 13920, 13933, 14422, 14626, 14671, Unpublished haplogroup 14803, 15342, 15492, 15582, 15598, 15599, 15717, N2a1. 15768, 15803, 15824, 15835, 15866, 15953, 16004, 16065, 16108, 16110, 16118, 16127, 16128 NC_00164 Phantom A1a 358d, 2227+T, 5098T, 5239+A, 5277+A, 10123C, A1a:358d, 2227+T, 5098T, 5239+A, 5277+A, 10123C, Xu,X. and 0(Horse mutaions: 10124G, 10826G, 10827G, 13685, 13709, 13742G, 10124G, 10826G, 10827G, 13685, 13709, 13742G, Arnason,U. and 358d,, 2227+A, 13996T, 15385+T 13996T, 15385+T Gene 148 Przewalski' 5239+A, (2), 357-362 s horse) 5277+A, (1994) 15385+T. AF034253( Surplus of E1a1, E1a1a1 109, 124T, 131, 136+C, 144, 152, 157, 180, 240, 293, E1a1:137C, E1a1:136+C, 691, 703, 705, 833-912d, 1136, 1187T, Lin,C.S., Pig and mutations. 305, 322, 389, 451, 500, 574, 691, 703, 705, 833-912d, 142+XA, 10517, 1204T, 1211T, 1638d, 2057, 2060T, 2099C, 2122, Sun,Y.L., wild boar) 1136, 1168, 1175, 1187T, 1204T, 1211T, 1225, 1304, 12518, 16358; 2388C, 2402, 2483T, 2501+C, 2501T, 2509, 2737, Liu,C.Y., 1315, 1412, 1638d, 1639, 1990, 2057, 2060T, 2064, E1a1a1:137C, 2758, 2967, 2989, 4132G, 4166G, 4191G, 4233G, Yang,P.C., 2065C, 2071, 2099C, 2122, 2335, 2339, 2388C, 2402, 142+XA, 12518, 6344, 12355, 12719G, 13051, 13377G, 13460, Chang,L.C., 2483T, 2501+C, 2501T, 2509, 2613, 2737, 2758, 2967, 16358 15420+AT, 16681; E1a1a1:136+C, 180, 691, 703, Cheng,I.C., 2989, 3064, 3088, 3102, 3366, 3451, 3594, 3640, 705, 833-912d, 1136, 1187T, 1204T, 1211T, 1638d, Mao,S.J. and 3873T, 3999, 4015, 4030, 4081, 4132G, 4166G, 4191G, 2057, 2060T, 2099C, 2122, 2388C, 2402, 2483T, Huang,M.C. 4233G, 4342, 4369, 4420, 4438, 4459, 4471, 4489A, 2501+C, 2501T, 2509, 2737, 2758, 2967, 2989, Gene 236 4711, 4737, 4754, 4846, 4939, 5168T, 5207, 5369, 4132G, 4166G, 4191G, 4233G, 6344, 12355, (1), 107-114 5463A, 5552, 5628, 5636, 5672, 5678, 5708, 5753, 12719G, 13051, 13377G, 13460, 15420+AT, 16681 (1999) 5797, 5873, 5880, 5948, 5963, 6092, 6138, 6164, 6171, 6296, 6298, 6344, 6508, 6925T, 6952, 6970, 7009, 7022, 7108, 7321, 7339, 7447, 7486, 7513, 7669, 7750, 7837, 8017, 8371, 8413, 8498, 8581, 8605, 8713, 8743, 8761, 8773, 9058, 9156, 9157, 9225, 9234, 9435, 9553, 9605, 9752, 9789, 9973, 10070, 10100, 10484, 10529, 10680, 10753, 10816, 10944, 11018, 11071, 11162, 11184, 11189, 11259, 11289, 11366, 11372, 11683, 11786, 11830, 11944, 12109, 12241, 12298, 12355, 12370, 12469, 12583, 12649, 12675, 12719G, 12958, 12962, 13049, 13051, 13377G, 13433A, 13460, 13478, 13581, 13605, 13838, 13997, 14209, 14213, 14313A, 14399, 14561C, 14639, 14710, 14738, 14812, 14839, 14947, 14998, 15025, 15109, 15127, 15151, 15277, 15362, 15420+AT, 15625, 15661, 15685, 15721, 15838, 15961, 16111, 16258, 16292, 16294, 16297, 16456, 16492, 16552, 16564, 16608, 16681 AY334492( Surplus of D1a1 66, 278, 436, 451, 500, 567+G, 619, D1a1:11432, D1a1:66, 436, 567+G, 619, Cho,I.C., Pig and mutations; 921+TGCGTACACGTGCGTACACGTGCGTACACGTGCGTAC 12064, 14198 921+TGCGTACACGTGCGTACACGTGCGTACACGTGCGT Han,S.H., wild boar) Phantom ACGTGCGTACACGTGCGTACACG, 1187, 1304, 1315, ACACGTGCGTACACGTGCGTACACG, 1187, 1304, Jeon,J.T., mutation 1463, 1631T, 2065C, 2336T, 2374, 3259d, 3594, 3642, 1315, 1463, 1631T, 2336T, 3259d, 3642, 5207, 5290, Ko,M.S., 1304. 4471, 5207, 5290, 5369, 5463A, 5552, 5573, 5597, 5369, 5463A, 5552, 5573, 5597, 5628, 5636, 5672, Fang,M. and 5628, 5636, 5672, 5678, 5708, 5753, 5797, 5805, 5873, 5678, 5708, 5753, 5797, 5805, 5873, 5880, 5963, Andersson,L. 5880, 5963, 6092, 6138, 6164, 6171, 6193, 6289, 6296, 6092, 6138, 6164, 6171, 6193, 6289, 6296, 6298, Unpublished 6298, 6344, 7258, 7469, 8083A, 8342, 8581, 9409T, 6344, 7258, 7469, 8083A, 8342, 9409T, 10100, 10100, 10264, 10504, 10514G, 11366, 11372, 11513, 10264, 10504, 10514G, 11366, 11372, 11513, 11683, 11786, 11830, 11944, 12055, 12109, 12241, 11683, 11786, 11830, 11944, 12055, 12109, 12241, 12298, 12370, 12469, 12518, 12583, 12649, 12675, 12298, 12370, 12469, 12518, 12583, 12649, 12675, 12879, 12958, 12962, 13037, 13049, 13433A, 13581, 12879, 12958, 12962, 13037, 13049, 13433A, 13601, 13605, 13838, 13997, 14044T, 14046, 14099, 13581, 13601, 13605, 13838, 13997, 14044T, 14125A, 14209, 14213, 14313A, 14316, 14399, 14046, 14099, 14125A, 14209, 14213, 14313A, 14561C, 14639, 14710, 14738, 14812, 14839, 15064, 14316, 14399, 14561C, 14639, 14738, 14812, 15196, 15220, 15337, 15713T, 15838, 16301, 16681, 14839, 15064, 15196, 15713T, 16681, 16690+C 16690+C AY337045( Artificial E1a1, E1a1a1 109, 124T, 131, 136+C, 144, 152, 157, 180, 240, 293, E1a1:137C, E1a1:136+C, 391+G, 691, 703, 705, 803-912d, 977d, Cho,I.C. Pig and recombination: 305, 322, 389, 391+G, 451, 500, 574, 691, 703, 705, 142+XA, 10517, 1959+C, 2499d, 2591, 2846T, 3153, 3566T, 5474, Unpublished wild boar) missed 803-912d, 977d, 1168, 1175, 1225, 1304, 1315, 1412, 10680, 12649, 6344, 8010, 8476C, 11973, 13197C, 13472C, mutations1051 1639, 1959+C, 1990, 2064, 2065C, 2071, 2335, 2339, 12675, 12958, 13745+TCA, 14135A, 14138G, 14163, 14272, 14316, 7, 10680, 2499d, 2591, 2613, 2846T, 3064, 3088, 3102, 3153, 12962, 13049, 14336, 14607, 15179, 16681, 16690+C; 12649, 12675, 3366, 3451, 3566T, 3594, 3640, 3873T, 3999, 4015, 13433A, 13478, E1a1a1:136+C, 180, 391+G, 691, 703, 705, 12958, 12962, 4030, 4081, 4342, 4369, 4420, 4438, 4459, 4471, 13581, 13605, 803-912d, 977d, 1959+C, 2499d, 2591, 2846T, 3153, 13049, 4489A, 4711, 4737, 4754, 4846, 4939, 5168T, 5207, 13838, 13997, 3566T, 5474, 6344, 8010, 8476C, 11973, 13197C, 13433A, 5369, 5463A, 5474, 5552, 5628, 5636, 5672, 5678, 14209, 14213, 13472C, 13745+TCA, 14135A, 14138G, 14163, 13478, 13581, 5708, 5753, 5797, 5873, 5880, 5948, 5963, 6092, 6138, 14313A, 14399, 14272, 14316, 14336, 14607, 15179, 16681, 13605, 13838, 6164, 6171, 6296, 6298, 6344, 6508, 6925T, 6952, 14561C, 14639, 16690+C 13997, 14209, 6970, 7009, 7022, 7108, 7321, 7339, 7447, 7486, 7513, 14738, 14812, 14213, 7669, 7750, 7837, 8010, 8017, 8371, 8413, 8476C, 14839; 14313A, 8498, 8581, 8605, 8713, 8743, 8761, 8773, 9058, 9156, E1a1a1:137C, 14399, 9157, 9225, 9234, 9435, 9553, 9605, 9752, 9789, 9973, 142+XA, 10680, 14561C, 14639 10070, 10100, 10484, 10529, 10753, 10816, 10944, 12649, 12675, from 11018, 11071, 11162, 11184, 11189, 11259, 11289, 12958, 12962, haplogroup 11366, 11372, 11683, 11786, 11830, 11944, 11973, 13049, 13433A, E1a; 12109, 12241, 12298, 12370, 12469, 12518, 12583, 13478, 13581, Phantom 13197C, 13472C, 13745+TCA, 14135A, 14138G, 14163, 13605, 13838, mutation 14272, 14316, 14336, 14607, 14710, 14947, 14998, 13997, 14209, 1304. 15025, 15109, 15127, 15151, 15179, 15277, 15362, 14213, 14313A, 15625, 15661, 15685, 15721, 15838, 15961, 16111, 14399, 14561C, 16258, 16292, 16294, 16297, 16358, 16456, 16492, 14639, 14738, 16552, 16564, 16608, 16681, 16690+C 14812, 14839

AF486858( Artificial E1a_AF48685 109, 131, 136+C, 144, 152, 157, 180, 240, 293, 305, E1a_AF486858:1 E1a_AF486858:136+C, 608-1319d, 1638d, 1639, Yang,J., Pig and recombination: 8 389, 451, 500, 574, 608-1319d, 1412, 1638d, 1639, 37C, 142+XA, 7447 Wang,J., wild boar) missing 1906, 1990, 2064, 2065C, 2335, 2339, 2613, 3064, 322, 1168, 1175, Kijas,J., mutations 322, 3088, 3102, 3366, 3451, 3594, 3640, 3873T, 3999, 1225, 1304, Liu,B., 1168, 1175, 4015, 4030, 4081, 4342, 4369, 4388T, 4420, 4438, 1315, 1638T, Han,H., 1225, 1304, 4459, 4471, 4489A, 4711, 4737, 4754, 4846, 4939, 1640d Yu,M., 1315, 1638T, 5168T, 5207, 5369, 5463A, 5552, 5628, 5636, 5672, Yang,H., 1640d of 5678, 5708, 5753, 5797, 5873, 5880, 5948, 5963, 6092, Zhao,S.and haplogroup 6138, 6164, 6171, 6296, 6298, 6508, 6925T, 6952, Li,K. J. E1a1b. 6970, 7009, 7022, 7108, 7321, 7339, 7447, 7486, 7513, Hered. 94 7669, 7750, 7837, 8017, 8371, 8413, 8498, 8581, 8605, (5), 381-385 8713, 8743, 8761, 8773, 9058, 9156, 9157, 9225, 9234, (2003) 9435, 9553, 9605, 9752, 9789, 9973, 10070, 10100, 10484, 10529, 10680, 10753, 10816, 10944, 11018, 11071, 11162, 11184, 11189, 11259, 11289, 11366, 11372, 11683, 11786, 11830, 11944, 12061, 12109, 12241, 12298, 12370, 12469, 12518, 12583, 12649, 12675, 12958, 12962, 13049, 13433A, 13478, 13581, 13605, 13838, 13997, 14209, 14213, 14313A, 14399, 14561C, 14639, 14710, 14738, 14812, 14839, 14947, 14998, 15025, 15109, 15127, 15151, 15277, 15362, 15625, 15661, 15685, 15721, 15838, 15961, 16111, 16258, 16292, 16294, 16297, 16358, 16456, 16492, 16552, 16564, 16608

AF486866( Artificial E1a1b 109, 124T, 131, 136+C, 144, 152, 157, 180, 240, 293, E1a1b:137C, E1a1b:136+C, 404, 608-1319d, 1638d, 3571, 6817, Yang,J., Pig and recombination: 305, 322, 389, 404, 451, 500, 574, 608-1319d, 1412, 142+XA, 1168, 15604 Wang,J., wild boar) missing 1638d, 1639, 1990, 2064, 2065C, 2071, 2335, 2339, 1175, 1225, Kijas,J., mutations 2613, 3064, 3088, 3102, 3366, 3451, 3571, 3594, 3640, 1304, 1315, Liu,B., 1168, 1175, 3873T, 3999, 4015, 4030, 4081, 4342, 4369, 4420, 10517 Han,H., 1225, 1304, 4438, 4459, 4489A, 4711, 4737, 4754, 4846, 4939, Yu,M., 1315, 10517 of 5168T, 5207, 5369, 5463A, 5552, 5628, 5636, 5672, Yang,H., haplogroup 5678, 5708, 5753, 5797, 5873, 5880, 5948, 5963, 6092, Zhao,S.and E1a1b. 6138, 6164, 6171, 6296, 6298, 6508, 6817, 6925T, Li,K. J. 6952, 6970, 7009, 7022, 7108, 7321, 7339, 7447, 7486, Hered. 94 7513, 7669, 7750, 7837, 8017, 8371, 8413, 8498, 8581, (5), 381-385 8605, 8713, 8743, 8761, 8773, 9058, 9156, 9157, 9225, (2003) 9234, 9435, 9553, 9605, 9752, 9789, 9973, 10070, 10100, 10484, 10529, 10680, 10753, 10816, 10944, 11018, 11071, 11162, 11184, 11189, 11259, 11289, 11366, 11372, 11683, 11786, 11830, 11944, 12109, 12241, 12298, 12370, 12469, 12518, 12583, 12649, 12675, 12958, 12962, 13049, 13433A, 13478, 13581, 13605, 13838, 13997, 14209, 14213, 14313A, 14399, 14561C, 14639, 14710, 14738, 14812, 14839, 14947, 14998, 15025, 15109, 15127, 15151, 15277, 15362, 15604, 15625, 15661, 15685, 15721, 15838, 15961, 16111, 16258, 16292, 16294, 16297, 16358, 16456, 16492, 16552, 16564, 16608

AY574045( Surplus of D1a1 278, 451, 473, 500, 556d, 783-912d, 962d, 1304, 1315, D1a1:4471 D1a1:473, 556d, 783-912d, 962d, 1304, 1315, Cho,I.C., Pig and mutations; 1638d, 2065C, 2374, 3163G, 3176G, 3179d, 3192d, 1638d, 3163G, 3176G, 3179d, 3192d, 4342, 4369, Park,J.J. and wild boar) Phantom 3594, 4342, 4369, 4399, 4420, 4438, 4459, 4489A, 4399, 4420, 4438, 4459, 4489A, 4676C, 4800, 5483, Jeon,J.T. mutation 4676C, 4800, 5483, 5702, 6011, 6210, 6344, 7022, 5702, 6011, 6210, 6344, 7022, 7233, 7252A, 7258, Unpublished 1304. 7233, 7252A, 7258, 7260T, 7263T, 7268C, 7341, 7611A, 7260T, 7263T, 7268C, 7341, 7611A, 7618A, 8125A, 7618A, 8125A, 8228d, 8234A, 8375A, 8377, 8378, 8228d, 8234A, 8375A, 8377, 8378, 8380T, 8468C, 8380T, 8468C, 8581, 8898, 9122, 9143, 9423T, 10068, 8898, 9122, 9143, 9423T, 10068, 10075, 10100, 10075, 10100, 10688, 10764T, 10771C, 11366, 11372, 10688, 10764T, 10771C, 11366, 11372, 11999C, 11432, 11999C, 12010C, 12064, 12088C, 12199C, 12010C, 12088C, 12199C, 12273C, 12337C, 12348C, 12273C, 12337C, 12348C, 12428C, 12532C, 12583, 12428C, 12532C, 12583, 12942d, 12989d, 13840A, 12942d, 12989d, 13840A, 14198, 14710, 14773, 14773, 15383, 15477, 15595T, 15907T, 16273, 15220, 15337, 15383, 15477, 15595T, 15838, 15907T, 16342, 16681 16273, 16301, 16342, 16681 AY574046( Surplus of E1a1b, 28, 43, 109, 124T, 131, 136+C, 144, 152, 157, 180, 240, E1a1b:137C, E1a1b:28, 43, 136+C, 701, 703, 705, 772-921d, 949, Cho,I.C., Pig and mutations; E1a1b_JN601 293, 305, 322, 389, 451, 500, 574, 701, 703, 705, 142+XA, 3640, 1638d, 1869+C, 2341C, 2410, 3120, 3244, 4399, Park,J.J. and wild boar) Phantom 066_JN60106 772-921d, 949, 1168, 1175, 1225, 1304, 1315, 1412, 10517; 5377A, 5389, 5470A, 5722T, 6344, 6814, 7497, Jeon,J.T. mutation 7 1638d, 1639, 1869+C, 1990, 2064, 2065C, 2071, 2335, E1a1b_JN601066 9496C, 9521, 9524T, 10281A, 10421, 10434, 10646, Unpublished 1304. 2339, 2341C, 2410, 2613, 3064, 3088, 3102, 3120, _JN601067:137C, 10972, 11705, 11823, 11880, 12603, 12850, 12997, 3244, 3366, 3451, 3594, 3873T, 3999, 4015, 4030, 142+XA, 3640, 13187G, 13722, 13931, 14149G, 14163G, 14259, 4081, 4342, 4369, 4399, 4420, 4438, 4459, 4489A, 14477T, 15333 14739, 16217A, 16681; 4711, 4737, 4754, 4846, 4939, 5168T, 5207, 5369, E1a1b_JN601066_JN601067:28, 43, 136+C, 701, 5377A, 5389, 5463A, 5470A, 5552, 5628, 5636, 5672, 703, 705, 772-921d, 1638d, 1869+C, 2341C, 2410, 5678, 5708, 5722T, 5753, 5797, 5873, 5880, 5948, 3120, 3244, 4399, 5377A, 5389, 5470A, 5722T, 5963, 6092, 6138, 6164, 6171, 6296, 6298, 6344, 6508, 6344, 6814, 7497, 9496C, 9521, 9524T, 10281A, 6814, 6925T, 6952, 6970, 7009, 7022, 7108, 7321, 10421, 10434, 10646, 10972, 11705, 11823, 11880, 7339, 7447, 7486, 7497, 7513, 7669, 7750, 7837, 8017, 12603, 12850, 12997, 13187G, 13722, 13931, 8371, 8413, 8498, 8581, 8605, 8713, 8743, 8761, 8773, 14149G, 14163G, 14259, 14739, 16217A, 16681 9058, 9156, 9157, 9225, 9234, 9435, 9496C, 9521, 9524T, 9553, 9605, 9752, 9789, 9973, 10070, 10100, 10281A, 10421, 10434, 10484, 10529, 10646, 10680, 10753, 10816, 10944, 10972, 11018, 11071, 11162, 11184, 11189, 11259, 11289, 11366, 11372, 11683, 11705, 11786, 11823, 11830, 11880, 11944, 12109, 12241, 12298, 12370, 12469, 12518, 12583, 12603, 12649, 12675, 12850, 12958, 12962, 12997, 13049, 13187G, 13433A, 13478, 13581, 13605, 13722, 13838, 13931, 13997, 14149G, 14163G, 14209, 14213, 14259, 14313A, 14399, 14561C, 14639, 14710, 14738, 14739, 14812, 14839, 14947, 14998, 15025, 15109, 15127, 15151, 15277, 15362, 15625, 15661, 15685, 15721, 15838, 15961, 16111, 16217A, 16258, 16292, 16294, 16297, 16358, 16456, 16492, 16552, 16564, 16608, 16681 AY574047( Surplus of D, D3 180, 213, 240, 281, 305, 559, 577, 873-912d, 1304, D3:451 D:180, 213, 240, 281, 305, 559, 577, 873-912d, Cho,I.C., Pig and mutations; 1315, 1943A, 2058+A, 2065C, 3140d, 3224, 3441+A, 1304, 1315, 1943A, 2058+A, 3140d, 3224, 3441+A, Park,J.J. and wild boar) Phantom 3594, 4275, 4471, 4493, 4568, 4812, 5092A, 5118, 4275, 4493, 4568, 4812, 5092A, 5118, 5170, 5369, Jeon,J.T. mutation 5170, 5369, 6053, 6344, 8088, 8098A, 8139T, 8148, 6053, 6344, 8088, 8098A, 8139T, 8148, 8152T, 8153, Unpublished 1304. 8152T, 8153, 8154G, 8155, 8157C, 8184d, 8209+T, 8154G, 8155, 8157C, 8184d, 8209+T, 8521, 9352A, 8521, 8581, 9352A, 9504, 9644A, 9648A, 9664, 9669G, 9504, 9644A, 9648A, 9664, 9669G, 9987, 10100, 9987, 10100, 11366, 11372, 11729, 11848, 12530, 11366, 11372, 11729, 11848, 12530, 12583, 12583, 13047G, 13088G, 13126G, 13131, 13925A, 13047G, 13088G, 13126G, 13131, 13925A, 14552, 14552, 14613A, 14710, 15337, 15650, 15838, 16325G, 14613A, 15650, 16325G, 16681, 16686; D3:180, 16681, 16686 213, 281, 305, 559, 577, 873-912d, 1304, 1315, 1943A, 2058+A, 3140d, 3224, 3441+A, 4275, 4493, 4568, 4812, 5092A, 5118, 5170, 5369, 6053, 6344, 8088, 8098A, 8139T, 8148, 8152T, 8153, 8154G, 8155, 8157C, 8184d, 8209+T, 8521, 9352A, 9504, 9644A, 9648A, 9664, 9669G, 9987, 10100, 11366, 11372, 11729, 11848, 12530, 12583, 13047G, 13088G, 13126G, 13131, 13925A, 14552, 14613A, 15650, 16325G, 16681, 16686 AY574048( Surplus of D1b1_JN6010 404, 480+T, 500, 664+A, 691, 772-921d, 945+A, D1b1_JN601075: D1b1_JN601075:480+T, 664+A, 691, 772-921d, Cho,I.C., Pig and mutations; 75 955-956d, 962, 964A, 1107+TAAAACACTTA, 1304, 1313 945+A, 955-956d, 962, 964A, 1107+TAAAACACTTA, Park,J.J. and wild boar) Phantom 1315, 2000d, 2065C, 2374, 2755, 3082, 3085T, 3144d, 1304, 1315, 2000d, 2755, 3082, 3085T, 3144d, Jeon,J.T. mutation 3153d, 3434, 3590C, 3594, 3660C, 3822A, 3823C, 3153d, 3590C, 3660C, 3822A, 3823C, 4291A, 4307, Unpublished 1304. 4291A, 4307, 4342, 4369, 4471, 5982, 6344, 4342, 4369, 5982, 6344, 6349-6360d, 7212, 8182, 6349-6360d, 6988, 7212, 8182, 8210T, 8267, 8545, 8210T, 8875, 9553, 9605, 9633T, 10100, 10816, 8581, 8875, 9372, 9553, 9605, 9633T, 10100, 10816, 10944, 11366, 11375T, 11918G, 12088C, 12229, 10944, 11366, 11375T, 11432, 11918G, 12064, 12088C, 12297G, 12556, 14361A, 14375, 14381, 14561C, 12229, 12297G, 12556, 13472C, 14361A, 14375, 14747, 15185, 16681 14381, 14561C, 14710, 14747, 15185, 15337, 15838, 16301, 16552, 16681 DQ207753 Surplus of D, D3 180, 240, 266, 281, 322, 442, 458, 461, 500, 559, 691, D3:451 D:180, 240, 266, 281, 322, 442, 458, 461, 500, 559, Cho,I.C., (Pig and mutations; 742-921d, 1304, 1315, 2058+A, 2065C, 2249T, 2864, 691, 742-921d, 1304, 1315, 2058+A, 2249T, 2864, Han,S.H., wild boar) Phantom 3166C, 3594, 3708, 4393, 4471, 4480, 4482, 4483, 3166C, 3708, 4393, 4480, 4482, 4483, 4484, 4561, Ko,M.S. and mutation 4484, 4561, 4742, 4922, 5022, 5092, 5118, 5393, 4742, 4922, 5022, 5092, 5118, 5393, 5688A, 5845, Andersson,L. 1304. 5688A, 5845, 6344, 7122, 7171, 8177, 8242G, 8581, 6344, 7122, 7171, 8177, 8242G, 9482A, 9485A, Unpublished 9482A, 9485A, 9490, 10100, 10494, 10954, 11102C, 9490, 10100, 10494, 10954, 11102C, 11104C, 11104C, 11366, 11372, 11876, 12354A, 12507, 12583, 11366, 11372, 11876, 12354A, 12507, 12583, 12957, 14455A, 14482G, 14492, 14536G, 14710, 12957, 14455A, 14482G, 14492, 14536G, 14983, 14983, 15154, 15337, 15526, 15838, 15909, 15998T, 15154, 15526, 15909, 15998T, 16166G, 16264, 16166G, 16264, 16342 16342; D3:180, 266, 281, 322, 442, 458, 461, 500, 559, 691, 742-921d, 1304, 1315, 2058+A, 2249T, 2864, 3166C, 3708, 4393, 4480, 4482, 4483, 4484, 4561, 4742, 4922, 5022, 5092, 5118, 5393, 5688A, 5845, 6344, 7122, 7171, 8177, 8242G, 9482A, 9485A, 9490, 10100, 10494, 10954, 11102C, 11104C, 11366, 11372, 11876, 12354A, 12507, 12583, 12957, 14455A, 14482G, 14492, 14536G, 14983, 15154, 15526, 15909, 15998T, 16166G, 16264, 16342 DQ207754 Surplus of D, D3 180, 240, 266, 281, 322, 442, 458, 461, 500, 559, 691, D3:451 D:180, 240, 266, 281, 322, 442, 458, 461, 500, 559, Cho,I.C., (Pig and mutations; 705-855d, 1304, 1315, 1348, 2065C, 2864, 2945C, 691, 705-855d, 1304, 1315, 1348, 2864, 2945C, Han,S.H., wild boar) Phantom 3594, 4266, 4393, 4471, 4480, 4575T, 4612N, 4646C, 4266, 4393, 4480, 4575T, 4612N, 4646C, 4742, Ko,M.S. and mutation 4742, 5092, 5118, 5143G, 5154, 5393, 5797A, 5828A, 5092, 5118, 5143G, 5154, 5393, 5797A, 5828A, Andersson,L. 1304. 6344, 7171, 8261T, 8581, 9715, 9889C, 10100, 10494, 6344, 7171, 8261T, 9715, 9889C, 10100, 10494, Unpublished 10736C, 10809T, 10826, 11366, 11372, 11876, 11944, 10736C, 10809T, 10826, 11366, 11372, 11876, 12105G, 12145T, 12507, 12572, 12583, 12957, 13496T, 11944, 12105G, 12145T, 12507, 12572, 12583, 13659A, 13781T, 14566T, 14710, 15064, 15154, 12957, 13496T, 13659A, 13781T, 14566T, 15064, 15321C, 15337, 15625, 15838, 16264, 16342 15154, 15321C, 15625, 16264, 16342; D3:180, 266, 281, 322, 442, 458, 461, 500, 559, 691, 705-855d, 1304, 1315, 1348, 2864, 2945C, 4266, 4393, 4480, 4575T, 4612N, 4646C, 4742, 5092, 5118, 5143G, 5154, 5393, 5797A, 5828A, 6344, 7171, 8261T, 9715, 9889C, 10100, 10494, 10736C, 10809T, 10826, 11366, 11372, 11876, 11944, 12105G, 12145T, 12507, 12572, 12583, 12957, 13496T, 13659A, 13781T, 14566T, 15064, 15154, 15321C, 15625, 16264, 16342 DQ207755 Surplus of D, D3 123d, 171, 180, 213, 240, 281, 305, 559, 663C, 691, D:15838; D3:451, D:123d, 171, 180, 213, 240, 281, 305, 559, 663C, Cho,I.C., (Pig and mutations; 853-912d, 977d, 1024, 1304, 1315, 1390, 2045A, 15838 691, 853-912d, 977d, 1024, 1304, 1315, 1390, Han,S.H., wild boar) Phantom 2065C, 2089+A, 2704T, 3171C, 3594, 4471, 4561, 5092, 2045A, 2089+A, 2704T, 3171C, 4561, 5092, 5118, Ko,M.S. and mutation 5118, 5154, 5369, 5688A, 6344, 8581, 9352A, 9433, 5154, 5369, 5688A, 6344, 9352A, 9433, 9485A, Andersson,L. 1304. 9485A, 9490, 9504, 10100, 11147, 11366, 11372, 9490, 9504, 10100, 11147, 11366, 11372, 11408, Unpublished 11408, 11417, 11848, 12134T, 12298A, 12530, 12583, 11417, 11848, 12134T, 12298A, 12530, 12583, 14536G, 14552, 14553C, 14710, 15337, 15650 14536G, 14552, 14553C, 15650; D3:123d, 171, 180, 213, 281, 305, 559, 663C, 691, 853-912d, 977d, 1024, 1304, 1315, 1390, 2045A, 2089+A, 2704T, 3171C, 4561, 5092, 5118, 5154, 5369, 5688A, 6344, 9352A, 9433, 9485A, 9490, 9504, 10100, 11147, 11366, 11372, 11408, 11417, 11848, 12134T, 12298A, 12530, 12583, 14536G, 14552, 14553C, 15650 DQ268530 Surplus of D, D3 180, 213, 240, 281, 305, 559, 752-921d, 1131, 1304, D:15838; D3:451, D:180, 213, 240, 281, 305, 559, 752-921d, 1131, Cho,I.C., (Pig and mutations; 1315, 1390+C, 1394T, 1395, 1399A, 1400+AAATGGCC, 15838 1304, 1315, 1390+C, 1394T, 1395, 1399A, Han,S.H., wild boar) Phantom 1409+A, 1873+A, 1939C, 1964-1966d, 1968, 1972d, 1400+AAATGGCC, 1409+A, 1873+A, 1939C, Ko,M.S. and mutation 2000d, 2033, 2034, 2037T, 2038G, 2042G, 2065C, 1964-1966d, 1968, 1972d, 2000d, 2033, 2034, Andersson,L. 1304. 2197d, 2383A, 2384T, 2385A, 2386C, 3082d, 3156, 2037T, 2038G, 2042G, 2197d, 2383A, 2384T, 2385A, Unpublished 3171C, 3176+C, 3441+A, 3594, 3834d, 3943, 4471, 2386C, 3082d, 3156, 3171C, 3176+C, 3441+A, 4532, 4561, 4721, 5022, 5092, 5118, 5369, 5688A, 3834d, 3943, 4532, 4561, 4721, 5022, 5092, 5118, 5733C, 5774T, 5780T, 5787A, 5788C, 5789A, 5796T, 5369, 5688A, 5733C, 5774T, 5780T, 5787A, 5788C, 5798T, 6344, 8248, 8305G, 8377, 8581, 8965, 9352A, 5789A, 5796T, 5798T, 6344, 8248, 8305G, 8377, 9406, 9504, 10100, 10801, 10813T, 11001, 11366, 8965, 9352A, 9406, 9504, 10100, 10801, 10813T, 11372, 11681A, 11682, 11685C, 11686A, 11702C, 11001, 11366, 11372, 11681A, 11682, 11685C, 11703A, 11704C, 11706A, 11772G, 11848, 12134T, 11686A, 11702C, 11703A, 11704C, 11706A, 11772G, 12298A, 12583, 12797T, 14552, 14710, 15337, 15650, 11848, 12134T, 12298A, 12583, 12797T, 14552, 15959, 16370, 16427 15650, 15959, 16370, 16427; D3:180, 213, 281, 305, 559, 752-921d, 1131, 1304, 1315, 1390+C, 1394T, 1395, 1399A, 1400+AAATGGCC, 1409+A, 1873+A, 1939C, 1964-1966d, 1968, 1972d, 2000d, 2033, 2034, 2037T, 2038G, 2042G, 2197d, 2383A, 2384T, 2385A, 2386C, 3082d, 3156, 3171C, 3176+C, 3441+A, 3834d, 3943, 4532, 4561, 4721, 5022, 5092, 5118, 5369, 5688A, 5733C, 5774T, 5780T, 5787A, 5788C, 5789A, 5796T, 5798T, 6344, 8248, 8305G, 8377, 8965, 9352A, 9406, 9504, 10100, 10801, 10813T, 11001, 11366, 11372, 11681A, 11682, 11685C, 11686A, 11702C, 11703A, 11704C, 11706A, 11772G, 11848, 12134T, 12298A, 12583, 12797T, 14552, 15650, 15959, 16370, 16427

DQ274110 Surplus of D1a1 278, 302A, 451, 500, 546A, 559, 684A, 691C, 803-912d, D1a1:302A, 546A, 559, 684A, 691C, 803-912d, Cho,I.C., (Pig and mutations; 1304, 1307d, 1315, 2065C, 2374, 2382+A, 2390+A, 1304, 1307d, 1315, 2382+A, 2390+A, 2952C, 2953A, Han,S.H., wild boar) Phantom 2952C, 2953A, 3140d, 3194T, 3195, 3224, 3241C, 3140d, 3194T, 3195, 3224, 3241C, 3441+A, 4478N, Ko,M.S. and mutation 3441+A, 3594, 4471, 4478N, 4484, 4511, 4561, 4737, 4484, 4511, 4561, 4737, 5022, 5089+CA, 5118, Andersson,L. 1304. 5022, 5089+CA, 5118, 5430T, 5745, 6275+T, 6344, 5430T, 5745, 6275+T, 6344, 6823G, 6972A, 6982, Unpublished 6823G, 6972A, 6982, 7003A, 7824, 8148d, 8160+C, 7003A, 7824, 8148d, 8160+C, 8209+T, 9316, 9485, 8209+T, 8581, 9316, 9485, 9556T, 9557T, 9560A, 9556T, 9557T, 9560A, 9562C, 9727C, 9729A, 10100, 9562C, 9727C, 9729A, 10100, 10504, 10857G, 10887, 10504, 10857G, 10887, 11001, 11035A, 11281G, 11001, 11035A, 11281G, 11285C, 11294C, 11366, 11285C, 11294C, 11366, 11372, 11681A, 11682, 11372, 11432, 11681A, 11682, 12064, 12190G, 12190G, 12296C, 12298, 12583, 13003C, 13339C, 12296C, 12298, 12583, 13003C, 13339C, 13414G, 13414G, 13781T, 14209 13781T, 14198, 14209, 14710, 15220, 15337, 15838, 16301 DQ334860 Surplus of D1a1 278, 451, 500, 557T, 1304, 1315, 2015+G, 2051, 2065C, D1a1:557T, 1304, 1315, 2015+G, 2051, 2249T, Han,S.-H., (Pig and mutations; 2249T, 2372G, 2374, 3084, 3085T, 3594, 3882T, 4471, 2372G, 3084, 3085T, 3882T, 5092, 5118, 5133G, Ko,M.-S. and wild boar) Phantom 5092, 5118, 5133G, 5135C, 5146A, 5430T, 5688A, 5135C, 5146A, 5430T, 5688A, 5733C, 5774T, 5780T, Cho,I.-C. mutation 5733C, 5774T, 5780T, 5787A, 5788C, 5789A, 5796T, 5787A, 5788C, 5789A, 5796T, 5798T, 6251T, 6252G, Unpublished 1304. 5798T, 6251T, 6252G, 6255T, 6256G, 6262T, 6263G, 6255T, 6256G, 6262T, 6263G, 6268, 6344, 9451, 6268, 6344, 8581, 9451, 9541, 10100, 10393, 10504, 9541, 10100, 10393, 10504, 10884, 11366, 11372, 10884, 11366, 11372, 11432, 12064, 12733, 12739, 12733, 12739, 12742A, 13193, 13718T, 13769, 12742A, 13193, 13718T, 13769, 13770, 13781T, 14198, 13770, 13781T, 16448, 16681 14710, 15220, 15337, 15838, 16301, 16448, 16681

DQ334861 Surplus of D1a1 268, 278, 323d, 451, 456, 500, 614+T, 631+T, 956, D1a1:268, 323d, 456, 614+T, 631+T, 956, 1068A, Han,S.-H., (Pig and mutations; 1068A, 1069C, 1070A, 1073T, 1218, 1304, 1315, 1069C, 1070A, 1073T, 1218, 1304, 1315, 1458A, Ko,M.-S. and wild boar) Phantom 1458A, 2015+G, 2051, 2065C, 2096d, 2270d, 2374, 2015+G, 2051, 2096d, 2270d, 2529, 2531, 2533C, Cho,I.-C. mutation 2529, 2531, 2533C, 2535, 2539G, 2540C, 2541, 2553d, 2535, 2539G, 2540C, 2541, 2553d, 2629+C, 2692+C, Unpublished 1304. 2629+C, 2692+C, 3144d, 3594, 4132G, 4187A, 4471, 3144d, 4132G, 4187A, 4484, 5092, 5118, 5430T, 4484, 5092, 5118, 5430T, 5745, 5831, 5961T, 5964T, 5745, 5831, 5961T, 5964T, 6344, 6655, 6968, 8148, 6344, 6655, 6968, 8148, 8157C, 8581, 9322, 9397C, 8157C, 9322, 9397C, 9457, 10100, 10504, 10918, 9457, 10100, 10504, 10918, 11130, 11366, 11372, 11130, 11366, 11372, 11612, 11729, 12090C, 11432, 11612, 11729, 12064, 12090C, 12583, 12733, 12583, 12733, 12739, 12742A, 13718T, 13779C, 12739, 12742A, 13718T, 13779C, 14198, 14404G, 14404G, 14536G, 14622G, 16681 14536G, 14622G, 14710, 15220, 15337, 15838, 16301, 16681 DQ466081 Surplus of D1a, D1c 240, 442, 500, 691, 703, 713, 753, 903-912d, 1175, D1a:240, 442, 691, 703, 713, 753, 903-912d, 1175, Wang,J.F., (Pig and mutations. 1638d, 1670C, 1692T, 1693A, 1764, 1783d, 1897, 1638d, 1670C, 1692T, 1693A, 1764, 1783d, 1897, Li,S. and wild boar) 2065C, 2161, 2374, 3594, 3810T, 4471, 5105, 5599, 2161, 3810T, 5105, 5599, 5765T, 7185, 9131, 10995, Ran,X.Q. 5765T, 7185, 8581, 9131, 10995, 11043, 11171, 11249, 11043, 11171, 11249, 11267T, 11271, 12061, Direct 11267T, 11271, 11432, 12061, 12064, 14198, 14290, 14290, 14618, 15601; D1c:240, 691, 703, 713, 753, Submission 14618, 14710, 15337, 15601, 15838, 16301 903-912d, 1175, 1638d, 1670C, 1692T, 1693A, 1764, 1783d, 1897, 2161, 3810T, 5105, 5599, 5765T, 7185, 9131, 10995, 11043, 11171, 11249, 11267T, 11271, 12061, 14198, 14290, 14618, 15601 DQ518915 Surplus of A1c 90, 180, 240, 278, 300, 301, 305, 322, 390, 451, 500, A1c:1087+2ACAA A1c:947G, 949, 965T, 978A, 986, 992C, 1006A, Chen,C.H., (Pig and mutations. The 534, 541, 574, 656, 947G, 949, 950T, 965T, 978A, 986, ACCAC, 11944, 1032G, 1059C, 1081+CAAACCACACAAACCACACA, Huang,H.-L., wild boar) strand issue of 992C, 1006A, 1032G, 1059C, 14540, 14541, 1753, 1754, 1755-1756d, 1757, 1758C, 1764A, 1790, Yang,H.-Y., ND6 gene has 1081+CAAACCACACAAACCACACA, 1175, 1315, 1412, 14639, 15025 1791d, 1797d, 1805d, 1817C, 3013d, 3917,3920d, Lai,S.-H., been 1753, 1754, 1755-1756d, 1757, 1758C, 1764A, 1790, 4676, 4676+TGC, 5021d, 6789, 8369C, 10582A, Yen,N.-T., corrected. 1791d, 1797d, 1805d, 1817C, 1834, 1906, 2065C, 2339, 10586, 11864A, 12064, 14603, 14676, 14818A, Wu,M.-C. 2514+A, 2726, 3013d, 3102, 3594, 3917,3920d, 4015, 14819+T,15220,15499,15502T and 4459, 4471, 4676, 4676+TGC, 4939, 5021d, 5405, Huang,M.C. 5463A, 5628, 5672, 5708, 5753, 5797, 6296, 6582, Afr. J. 6789, 6925, 6952, 6970, 7339, 7465, 7513, 7540, 7669, Biotechnol. 7837, 8017, 8369C, 8398, 8581, 8668, 9052, 9156, 10 (13), 9309, 9414, 9435, 9480, 9699, 9727, 9822, 10070, 2556-2561 10100, 10205, 10457, 10582A, 10586, 10680, 11174, (2011) 11184, 11259, 11279, 11341, 11411, 11735, 11864A, 12064, 12649, 12787, 12909, 13049, 13159, 13175, 13227A, 13460, 13781, 14213, 14369, 14603, 14676, 14710, 14818A, 14819A, 14819+T, 15220,15337, 15499, 15502T, 15685, 15700, 15721, 15838, 16036, 16111, 16258, 16292, 16400 DQ534707 Surplus of D1a1a 29A, 30, 32, 172G, 240, 278, 451, 500, 691, D1a1a:12064, D1a1a:29A, 30, 32, 172G, 691, Chen,C.H., (Pig and mutations. 921+TGCGTACACGTGCGTACACGTGCGTACACGTGCGTAC 15220 921+TGCGTACACGTGCGTACACGTGCGTACACGTGCGT Yang,H.Y., wild boar) ACG, 925, 930C, 933, 934C, 944A, 945, 946T, 954T, ACACG, 925, 930C, 933, 934C, 944A, 945, 946T, Yen,N.T. and 1022d, 1174, 1196C, 1318T, 1326C, 1486, 1609, 1641C, 954T, 1022d, 1174, 1196C, 1318T, 1326C, 1486, Huang,M.C. 1642+C, 1654, 1664, 1666G, 1681T, 1682G, 1688, 1609, 1641C, 1642+C, 1654, 1664, 1666G, 1681T, Direct 1691, 1692T, 1693A, 1695T, 1696+T, 1714T, 1682G, 1688, 1691, 1692T, 1693A, 1695T, 1696+T, Submission 1715-1716d, 1728G, 1742d, 2065C, 2374, 2445, 2446, 1714T, 1715-1716d, 1728G, 1742d, 2445, 2446, 2447A, 2448A, 2451G, 2591, 3488, 3594, 4471, 5847, 2447A, 2448A, 2451G, 2591, 3488, 5847, 6097A, 6097A, 6799, 6998C, 8291A, 8292, 8317, 8319, 8581, 6799, 6998C, 8291A, 8292, 8317, 8319, 8767C, 8767C, 9014, 9388C, 9941A, 11366T, 11432, 11856, 9014, 9388C, 9941A, 11366T, 11856, 11944, 11944, 14008T, 14057A, 14107A, 14198, 14476, 14710, 14008T, 14057A, 14107A, 14476, 15025, 15961G 15025, 15337, 15838, 15961G, 16301 DQ972936 Surplus of D1b1 240, 404, 500, 691, 712-921d, 1107+TAAAACACTTA, D1b1:240, 691, 712-921d, 1107+TAAAACACTTA, Wu,C.Y., (Pig and mutations. 2065C, 2374, 3434, 3594, 4471, 6604G, 6660G, 8267, 6604G, 6660G, 8596, 9785, 11073C, 11506G, Jiang,Y.N., wild boar) 8581, 8596, 9372, 9785, 11073C, 11432, 11506G, 11575G, 11613, 11977, 12850, 14105+A, 14124+T, Chu,H.P., 11575G, 11613, 11977, 12064, 12850, 13472C, 14129+G Li,S.H., 14105+A, 14124+T, 14129+G, 14710, 15337, 15838, Wang,Y., 16301 Li,Y.H., Chang,Y. and Ju,Y.T. Anim. Genet. 38 (5), 499-505 (2007) EU090702( Surplus of D, D3 180, 240, 281, 305, 322, 442, 461, 500, 559, 691, D3:451 D:180, 240, 281, 305, 322, 442, 461, 500, 559, 691, Cho,I.C., Pig and mutations; 921+TGCGTACACGTGCGTACACGTGCGTACACG, 1187, 921+TGCGTACACGTGCGTACACGTGCGTACACG, Han,S.H., wild boar) Phantom 1304, 1315, 1577G, 1841C, 1861C, 1906, 1912C, 1187, 1304, 1315, 1577G, 1841C, 1861C, 1906, Lee,S.S., mutation 1914A, 1915C, 1920, 2030T, 2042, 2051, 2065C, 1912C, 1914A, 1915C, 1920, 2030T, 2042, 2051, Ko,M.S., 1304. 2089+A, 2362G, 2383G, 2864, 3113A, 3170C, 3173A, 2089+A, 2362G, 2383G, 2864, 3113A, 3170C, Lee,J.G. and 3594, 3792G, 4331, 4375C, 4393, 4471, 4480, 4502, 3173A, 3792G, 4331, 4375C, 4393, 4480, 4502, Jeon,J.T. 4584, 4742, 5022, 5092, 5118, 5393, 6344, 6411, 7002, 4584, 4742, 5022, 5092, 5118, 5393, 6344, 6411, Unpublished 7053, 7171, 7954C, 8080T, 8264, 8581, 8639, 8812, 7002, 7053, 7171, 7954C, 8080T, 8264, 8639, 8812, 9457, 9502, 9565, 9614G, 9727, 9890C, 10100, 10494, 9457, 9502, 9565, 9614G, 9727, 9890C, 10100, 10740A, 11366, 11372, 12035T, 12134T, 12185G, 10494, 10740A, 11366, 11372, 12035T, 12134T, 12325G, 12331G, 12332C, 12507, 12532, 12572, 12185G, 12325G, 12331G, 12332C, 12507, 12532, 12583, 12632C, 12957, 13159, 13241, 13245G, 12572, 12583, 12632C, 12957, 13159, 13241, 14275G, 14334T, 14386G, 14388T, 14409G, 14417G, 13245G, 14275G, 14334T, 14386G, 14388T, 14409G, 14589, 14710, 15154, 15337, 15838, 16055, 16264, 14417G, 14589, 15154, 16055, 16264, 16342, 16342, 16681, 16686, 16681, 16686, 16690+CAGCACCCAAAGCTGAAATTCTAACTAAACTATTCC 16690+CAGCACCCAAAGCTGAAATTCTAACTAAACTAT CTG TCCCTG; D3:180, 281, 305, 322, 442, 461, 500, 559, 691, 921+TGCGTACACGTGCGTACACGTGCGTACACG, 1187, 1304, 1315, 1577G, 1841C, 1861C, 1906, 1912C, 1914A, 1915C, 1920, 2030T, 2042, 2051, 2089+A, 2362G, 2383G, 2864, 3113A, 3170C, 3173A, 3792G, 4331, 4375C, 4393, 4480, 4502, 4584, 4742, 5022, 5092, 5118, 5393, 6344, 6411, 7002, 7053, 7171, 7954C, 8080T, 8264, 8639, 8812, 9457, 9502, 9565, 9614G, 9727, 9890C, 10100, 10494, 10740A, 11366, 11372, 12035T, 12134T, 12185G, 12325G, 12331G, 12332C, 12507, 12532, 12572, 12583, 12632C, 12957, 13159, 13241, 13245G, 14275G, 14334T, 14386G, 14388T, 14409G, 14417G, 14589, 15154, 16055, 16264, 16342, 16681, 16686, 16690+CAGCACCCAAAGCTGAAATTCTAACTAAACTAT TCCCTG

EU090703( Surplus of D1e'g'h 67, 240, 266, 347A, 451, 500, 559, 873-912d, 1304, D1e'g'h:67, 266, 347A, 451, 873-912d, 1304, 1315, Cho,I.C., Pig and mutations; 1315, 1463C, 1576C, 1600C, 1868A, 1888T, 1891+ATC, 1463C, 1576C, 1600C, 1868A, 1888T, 1891+ATC, Han,S.H., wild boar) Phantom 2065C, 2089+A, 2374, 2554, 2961C, 2992, 2999N, 2089+A, 2554, 2961C, 2992, 2999N, 3006C, 3075C, Lee,S.S., mutation 3006C, 3075C, 3077C, 3162C, 3292, 3594, 4152, 4278, 3077C, 3162C, 3292, 4152, 4278, 4442T, 5022, 5092, Ko,M.S., 1304. 4442T, 4471, 5022, 5092, 5118, 6077, 6344, 6829A, 5118, 6077, 6344, 6829A, 6833G, 6842, 6850G, Lee,J.G. and 6833G, 6842, 6850G, 6855, 6868, 6899G, 7013G, 7024, 6855, 6868, 6899G, 7013G, 7024, 7050T, 7051G, Jeon,J.T. 7050T, 7051G, 7531, 8270, 8462T, 8581, 8853, 9193, 7531, 8270, 8462T, 8853, 9193, 9559C, 9715, Unpublished 9559C, 9715, 9719G, 10100, 10583, 11366, 11372, 9719G, 10100, 10583, 11366, 11372, 13202, 11432, 12064, 13202, 13742C, 14116, 14272, 14300G, 13742C, 14116, 14272, 14300G, 14428A, 14883, 14428A, 14710, 14883, 15337, 15838, 16025, 16301, 16025, 16681, 16681, 16690+CAGCACCCAAAGCTGAAATTCTAACTAAACTAT 16690+CAGCACCCAAAGCTGAAATTCTAACTAAACTATTCC TCCCTG CTG EU333163 Artificial D1f 109, 124T, 131, 136+C, 144, 152, 157, 240, 281, 299, D1f:2374, 11432 D1f:109, 124T, 131, 136+C, 144, 152, 157, 281, Yu,H., Li,L. (Pig and recombination: 500, 803-912d, 977d, 1168, 1175, 1225, 1304, 1315, 803-912d, 977d, 1168, 1175, 1225, 1304, 1315, and Liu,D. wild boar) missing 1412, 1639, 1959+C, 1990, 2064, 2065C, 2071, 2335, 1412, 1639, 1959+C, 1990, 2064, 2071, 2335, 2339, Unpublished mutations 2339, 2499d, 2591, 2613, 3287, 3437+C, 3594, 4342, 2499d, 2591, 2613, 3287, 3437+C, 4342, 4369, 2374, 11432 of 4369, 4420, 4438, 4459, 4471, 4489A, 4711, 4737, 4420, 4438, 4459, 4489A, 4711, 4737, 4754, 4846, haplogroup 4754, 4846, 4939, 5168T, 5207, 5369, 5463A, 5474, 4939, 5168T, 5207, 5369, 5463A, 5474, 5552, 5628, D1; mis-added 5552, 5628, 5636, 5672, 5678, 5708, 5753, 5797, 5873, 5636, 5672, 5678, 5708, 5753, 5797, 5873, 5880, mutations 109, 5880, 5948, 5963, 6092, 6138, 6164, 6171, 6296, 6298, 5948, 5963, 6092, 6138, 6164, 6171, 6296, 6298, 124T, 131, 6344, 6508, 6658G, 6944, 7313, 7393G, 7447, 7486, 6344, 6508, 6658G, 6944, 7313, 7393G, 7447, 7486, 137C, 142+A, 7613, 7624, 7627, 7750, 7837, 8010, 8017, 8371, 8413, 7613, 7624, 7627, 7750, 7837, 8010, 8017, 8371, 144, 152, 157, 8476C, 8498, 8581, 8605, 8713, 8743, 8761, 8773, 8413, 8476C, 8498, 8605, 8713, 8743, 8761, 8773, 1168, 1412, 9058, 9156, 9157, 9225, 9234, 10100, 10354, 10753, 9058, 9156, 9157, 9225, 9234, 10100, 10753, 2064, 2071, 10816, 10944, 11018, 11071, 11162, 11184, 11189, 10816, 10944, 11018, 11071, 11162, 11184, 11189, 2339, 2613, 11259, 11289, 11366, 11372, 11683, 11786, 11830, 11259, 11289, 11366, 11372, 11683, 11786, 11830, 4420, 4438, 12064, 12620G, 12713C, 13202, 14710, 15337, 15838, 12620G, 12713C 4459, 4489A, 16301 4737, 4754, 4939, 5168T, 5207, 5463A, 5552, 5628, 5636, 5672, 5678, 5708, 5753, 5880, 5948, 5963, 6138, 6171, 6296, 6298, 6508, 7486, 7750, 7837, 8017, 8371, 8413, 8605, 8743, 8761, 9058, 9156, 9157, 9225, 9234, 10100, 10753, 11081, 11162, 11189, 11289, 11372, 11683, 11786, 11830 of haplogroup E1a.

GQ351599 Artificial D3_EF545572 109, 124T, 131, 136+C, 144, 152, 157, 180, 240, 293, D3_EF545572:27 D3_EF545572:109, 124T, 131, 136+C, 144, 152, 157, Chung,H.Y. (Pig and recombination: 305, 322, 389, 451, 500, 559, 691, 911-978d, 2065C, 8, 1311, 5393, 180, 293, 305, 322, 389, 500, 559, 691, 911-978d, Unpublished wild boar) mis-added 3064Y, 3594, 4471, 4939Y, 5435, 5552R, 6841, 7309, 7468, 7615, 8533, 3064, 4939, 5552, 6841, 9752, 9789, 11018, 11071, mutations 109, 7540, 8581, 8686, 9752R, 9789Y, 10030Y, 11018Y, 15154, 15337 11259, 11432, 11830, 11944, 12109, 12649, 12675, 124T, 131, 11071R, 11259Y, 11432, 11539, 11552, 11830, 11944, 12719G, 12958, 12962, 13377G, 13433A, 13478, 137C, 142+A, 12109, 12649, 12675, 12719S, 12958, 12962, 13377S, 14209, 14213, 14313A, 14399, 14561C, 14639, 144, 152, 157, 13433A, 13478, 14209, 14213, 14313A, 14399, 15109, 15127, 15151, 15277, 15362, 15420+AT, 180, 293, 305, 14561C, 14639R, 14710, 15109, 15127, 15151, 15277, 16301, 16564, 16608, 16681 322, 389, 500 15362, 15420+AT, 15634, 15838, 15850, 16301, 16468, of 16564, 16608, 16681 haplogroup E1a. KC250273( Artificial D1e 240, 300, 500, 559, 691, D1e:691, 921+TGCGTACACGTGCGTACACG, 1638d, Yu,G., Pig and recombination: 921+TGCGTACACGTGCGTACACG, 1638d, 2065C, 2374, 4842, 9553, 9605, 9917T Xiang,H., wild boar) mis-added 3594, 4471, 4842, 8135, 8581, 9553, 9605, 9917T, Wang,J. and mutations 11014A, 11432, 12064, 14710, 15337, 15838, 16301 Zhao,X. J 9553, 9605 Anim Sci from Biotechnol 4 haplogroup (1), 9 (2013) E1a. KC469586( Artificial D1a1a 240, 278, 451, 500, 833-912d, 1254+A, 1638d, 2065C, D1a1a:2374, D1a1a:833-912d, 1254+A, 1638d, 2369d, 2613, Yu,G., Pig and recombination: 2369d, 2613, 3594, 4471, 5672, 5678, 5708, 5753, 15220 5672, 5678, 5708, 5753, 8017, 9156, 9157, 9225, Xiang,H., wild boar) missing 8017, 8581, 9156, 9157, 9225, 9234, 10616, 11432, 9234, 10616, 14812, 14839, 16111, 16690+G Wang,J. and mutations 12064, 14198, 14710, 14812, 14839, 15337, 15838, Zhao,X. J 2374, 15220 of 16111, 16301, 16690+G Anim Sci haplogroup Biotechnol 4 D1a1; (1), 9 (2013) mis-added mutations 2613, 5672, 5678, 5708, 5753, 8017, 9156, 9157, 9225, 9234, 16111 from haplogroup E. AY858379( Surplus of A2,A2_HM23 281Y, 291Y, 566+G, 1099W, 1111M, 1261M, 1264S, A2:538, 1112, A2:281Y, 291Y, 1099W, 1111M, 1261M, 1264S, Ha,J.M. and Sheep) mutations 6175 1277M, 1285S, 1288R, 1289R, 1290K, 1729+C, 2774Y, 2443, 4182, 1277M, 1285S, 1288R, 1289R, 1290K, 2774Y, 2966Y, Chung,H.Y. 2966Y, 3218R, 3431R, 3543W, 3662R, 6726R, 7216Y, 4215, 4443, 3218R, 3431R, 3543W, 3662R, 6726R, 7216Y, 7435Y, Unpublished. 7435Y, 7500M, 7522R, 7983Y, 8039R, 8121Y, 8264C, 4839, 4915, 7500M, 7522R, 7983Y, 8039R, 8121Y, 8651Y, 9284R, 8376, 8651Y, 9284R, 9375R, 9756Y, 9996Y, 10549R, 4935, 5565, 9375R, 9756Y, 9996Y, 10549R, 10714R, 10852R, 10714R, 10852R, 11317R, 11668R, 11846Y, 12287Y, 5784, 6267, 6510, 11317R, 11668R, 11846Y, 12287Y, 12539S, 12571S, 12539S, 12571S, 13172Y, 13199R, 13576Y, 13813S, 6555, 6615, 13172Y, 13199R, 13576Y, 13813S, 14055Y, 14467Y, 14055Y, 14467Y, 14653R, 15459Y, 15484R, 15547R, 6628, 7141, 14653R, 15459Y, 15484R, 15547R, 15583Y, 15594R, 15583Y, 15594R, 15597Y, 15635R, 15638Y, 15639R, 7719G, 8148, 15597Y, 15635R, 15638Y, 15639R, 15645R, 15656R, 15642+T, 15645R, 15656R, 15659K, 15708Y, 15710W, 8256, 9128, 15659K, 15708Y, 15710W, 15714R, 15716M, 15721Y, 15714R, 15716M, 15721Y, 15722M, 15731R, 15734K, 9188, 10118, 15722M, 15731R, 15734K, 15789R, 15797M, 15789R, 15797M, 15800Y, 15806R, 15809K, 15818W, 10783, 11023, 15800Y, 15806R, 15809K, 15818W, 15820Y, 15833W, 15820Y, 15833W, 15858Y, 15872M, 15881R, 15882W, 11482, 11491, 15858Y, 15872M, 15881R, 15882W, 15905W, 15905W, 15920K, 15928Y, 15932S, 15944R, 15956Y, 11606, 11710d, 15920K, 15928Y, 15932S, 15944R, 15956Y, 15957R, 15957R, 15958Y, 15978W, 15982R, 15986K, 15996W, 11783, 11834, 15958Y, 15978W, 15982R, 15986K, 15996W, 16003K, 16011R, 16038R, 16128Y, 16209Y, 16342+Y, 12023, 13097, 16003K, 16011R, 16038R, 16128Y, 16209Y, 16342+Y; 16343 13436, 13837, A2_HM236175:281Y, 291Y, 1099W, 1111M, 1261M, 13855, 15864, 1264S, 1277M, 1285S, 1288R, 1289R, 1290K, 2774Y, 15939, 15972, 2966Y, 3218R, 3431R, 3543W, 3662R, 6726R, 7216Y, 15978, 16020, 7435Y, 7500M, 7522R, 7983Y, 8039R, 8121Y, 8651Y, 16022, 16036, 9284R, 9375R, 9756Y, 9996Y, 10549R, 10714R, 16042, 16048, 10852R, 11317R, 11668R, 11846Y, 12287Y, 12539S, 16096, 16097, 12571S, 13172Y, 13199R, 13576Y, 13813S, 14055Y, 16217, 16342+C, 14467Y, 14653R, 15459Y, 15484R, 15547R, 15583Y, 16440, 16453, 15594R, 15597Y, 15635R, 15638Y, 15639R, 15645R, 16472d, 16602; 15656R, 15659K, 15708Y, 15710W, 15714R, A2_HM236175:5 15716M, 15721Y, 15722M, 15731R, 15734K, 38, 1112, 2443, 15789R, 15797M, 15800Y, 15806R, 15809K, 4182, 4215, 15818W, 15820Y, 15833W, 15858Y, 15872M, 4443, 4839, 15881R, 15882W, 15905W, 15920K, 15928Y, 4915, 4935, 15932S, 15944R, 15956Y, 15957R, 15958Y, 15978W, 5565, 5784, 6267, 15982R, 15986K, 15996W, 16003K, 16011R, 6510, 6555, 16038R, 16128Y, 16209Y, 16342+Y 6615, 6628, 7141, 7719G, 8148, 8256, 9128, 9188, 10118, 10783, 11023, 11482, 11491, 11606, 11710d, 11783, 11834, 12023, 13097, 13436, 13837, 13855, 15864, 15939, 15972, 15978, 16020, 16022, 16036, 16042, 16048, 16096, 16097, 16217, 16342+C, 16440, 16453, 16472d, 16602

KF312238( Surplus of CE 538, 566+G, 708-709d, 712+G, 713, 729C, 737, 744, CE:281, 711, CE:708-709d, 712+G, 713, 729C, 737, 744, 770, Mereu,P. Sheep) mutations 770, 787T, 788G, 1112, 1247, 1563, 1729+C, 1788, 1413, 1469, 787T, 788G, 2199, 3041G, 3218T, 4443, 5147, 5922, Unpublished 2199, 2621, 2774, 2867, 3023, 3041G, 3218T, 3338, 1683, 2903, 7225, 7978, 7980A, 7986, 7992, 8013, 8020, 8023, 3543A, 3662, 3930, 4008, 4182, 4208, 4428, 4443, 3218, 3431, 8028, 8031, 8047, 8052A, 8082, 8089, 8091T, 8109, 4524, 4839, 4915, 4935, 5137, 5147, 5763, 5784, 4224, 8376, 8413, 8112, 8118, 8133, 8140, 8148, 8149, 8154, 8163, 5850A, 5901, 5922, 5979, 6267, 6423, 6555, 6615, 8651, 9056, 8164, 8175, 8184, 8185, 8188, 8196A, 8220, 8227, 6628, 6726, 6738, 6834, 7000, 7096, 7174, 7225, 7435, 9375, 11338, 8238, 8239, 8250, 8256, 8271, 8286, 8287, 8304A, 7466, 7500A, 7639, 7645, 7755, 7773, 7918, 7978, 14551, 15597, 8310, 8346, 8352, 8355, 8382C, 8385, 8388, 8415, 7980A, 7983, 7986, 7992, 8013, 8020, 8023, 8028, 15607, 15956, 8420, 8421, 8424, 8442T, 8443, 8452, 8457, 8476, 8031, 8047, 8052A, 8082, 8089, 8091T, 8109, 8112, 15963, 15965, 8480, 8487, 8489, 8505, 8508, 8510, 8514, 8520, 8118, 8121, 8133, 8140, 8148, 8149, 8154, 8163, 8164, 15967, 16020, 8524, 8526, 8527, 8535, 8536, 8571, 8577, 8583, 8175, 8184, 8185, 8188, 8196A, 8220, 8227, 8238, 16133, 16156, 8607, 8633, 8663, 8666, 8693, 8705, 8708, 8738, 8239, 8250, 8256, 8264C, 8271, 8286, 8287, 8304A, 16472d 8744, 8747, 8750, 8783, 8789, 8798, 8799T, 8810, 8310, 8346, 8352, 8355, 8382C, 8385, 8388, 8415, 8834, 8835, 8846, 8849, 8854, 8855, 8870, 8873, 8420, 8421, 8424, 8442T, 8443, 8452, 8457, 8476, 8876, 8883, 8888, 8889, 9146, 9417, 9555, 10249, 8480, 8487, 8489, 8505, 8508, 8510, 8514, 8520, 8524, 10960, 11194T, 11203, 11204, 11212, 11215, 8526, 8527, 8535, 8536, 8571, 8577, 8583, 8607, 8633, 11425, 12188, 12438, 13091, 13373, 13605, 14308, 8663, 8666, 8693, 8705, 8708, 8738, 8744, 8747, 8750, 14656, 15169, 15551, 15556, 15658, 15676, 15858, 8783, 8789, 8798, 8799T, 8810, 8816, 8834, 8835, 15879+T, 15903, 15939, 15959, 15961, 15990, 8846, 8849, 8854, 8855, 8870, 8873, 8876, 8883, 8888, 16003, 16044, 16101, 16356, 16441 8889, 9146, 9282, 9284, 9374, 9417, 9555, 9579, 9582, 9636, 9756, 9789, 10002, 10094, 10118, 10249, 10367, 10549, 10783, 10852, 10924, 10960, 11152, 11194T, 11203, 11204, 11212, 11215, 11317, 11425, 11454, 11482, 11491, 11668, 11710d, 11834, 11915, 12086, 12188, 12287, 12326, 12438, 12521, 12539C, 12571C, 12887, 13091, 13151, 13154, 13172, 13199, 13361, 13373, 13436, 13552, 13576, 13605, 13675, 13806, 13810, 13813C, 13855, 14055, 14308, 14365, 14467, 14634, 14653, 14656, 14854, 14971, 15097, 15169, 15509, 15551, 15556, 15583, 15629, 15658, 15676, 15708, 15721, 15727, 15729+T, 15800, 15802, 15804+T, 15820, 15858, 15877, 15879+T, 15903, 15939, 15959, 15961, 15971, 15972, 15977, 15978, 15990, 16003, 16008, 16036, 16042, 16044, 16048, 16096, 16097, 16101, 16128, 16209, 16217, 16342+C, 16343, 16356, 16429, 16440, 16441, 16453, 16546, 16602

AY684273( Surplus of B1b1 327, 328, 366G, 392, 406, 407+GC, 408, 409, 881G, B1b1:5423 B1b1:366G, 392, 406, 407+GC, 408, 409, 881G, Gu,Z., Yak and mutations. 979G, 980G, 1016+T, 1617, 2073T, 2741T, 2866, 3681G, 979G, 980G, 1016+T, 1617, 2073T, 2741T, 3681G, Zhao,X., Li,N. wild yak) 3802, 4849A, 4852A, 4895, 5015, 5373, 5374G, 5375T, 3802, 4849A, 4852A, 4895, 5373, 5374G, 5375T, and Wu,C. 5378d, 5386d, 5397d, 6136, 7537C, 7538, 7539, 7646G, 5378d, 5386d, 5397d, 6136, 7537C, 7538, 7539, Mol. 7808, 8366A, 8556, 8599, 8864, 8924, 9140, 9481, 7646G, 7808, 8366A, 8599, 8864, 8924, 9140, 9481, Phylogenet. 9484, 9487, 10361, 11375, 11920G, 12267C, 13113, 9484, 9487, 10361, 11375, 11920G, 12267C, 13326, Evol. 42 (1), 13326, 13354, 13356G, 13363, 13370, 13476, 13477, 13354, 13356G, 13363, 13370, 13476, 13477, 248-255 14037, 14684, 14685G, 14717T, 14718, 14719, 14942, 14037, 14684, 14685G, 14717T, 14718, 14719, (2007) 15074, 15093, 15397, 15719 14942 GQ464251 Artificial CD 327, 328, 366G, 392, 406G, 881G, 987, 1082, 1612, CD:135, 142, 187, CD:328, 366G, 392, 406G, 881G, 2694A, 3760, 4421, Wang,Z., (Yak and recombinatio: 1656, 2007A, 2398, 2629, 2647, 2694A, 2852, 3498, 193, 248, 255, 7271, 13569, 14636 Shen,X., wild yak) missing 3502, 3676, 3760, 4421, 4881, 5015, 5390, 5693, 5748, 275, 292, 308, Liu,B., Su,J., mutations 6491, 6500, 6761, 6764, 6866, 7271, 7409, 7941, 7950, 309, 316, 325, Yonezawa,T., 110T, 117, 135, 8400, 8415, 8481, 8484, 8523, 8556, 8577, 8848, 8875, 355, 390, 391, Yu,Y., 142, 187, 193, 8938, 9756, 10083, 10338, 10477, 10498, 10534, 500, 538, 693, Guo,S.,Ho,S.Y 218T, 220, 248, 10645, 10824, 11315, 11711, 12131, 12252, 12314, 696, 719, 730, .W., Vila,C., 249, 255, 275, 12320, 12323, 12383, 12675, 12804, 12823, 13086, 810 Hasegawa,M 292, 308, 309, 13113, 13530, 13569, 13786, 14636, 14645, 14675, . and Liu,J. J. 316, 325, 333, 15093, 15287, 15332, 15398, 15419, 15503, 15719, Biogeogr. 37 355, 390, 391, 15833, 15950 (12), 500, 538, 693, 2332-2344 696, 719, 730, (2010) 810 of haplogroup C1b. GQ464267 Artificial D1 135, 142, 187, 193, 248, 255, 275, 292, 308, 309, 316, D1:310, 391, D1:333, 2850, 10050, 12490, 13256G Wang,Z., (Yak and recombination: 325, 327, 333, 355, 390, 500, 538, 693, 696, 719, 730, 6491, 6500, Shen,X., wild yak) missing 810, 987, 1082, 1612, 1656, 2007A, 2398, 2629, 2647, 6761, 6764, 6866 Liu,B., Su,J., mutations 2850, 2852, 3498, 3502, 3676, 4881, 5015, 5390, 5693, Yonezawa,T., 6491, 6500, 5748, 7941, 7950, 8400, 8415, 8481, 8484, 8523, 8556, Yu,Y., 6761, 6764, 8577, 8655, 8848, 8875, 8938, 9756, 10050, 10083, Guo,S.,Ho,S.Y 6866, 7409 of 10338, 10477, 10498, 10534, 10645, 10824, 11315, .W., V ila,C., haplogroup 11554, 11711, 12131, 12252, 12314, 12320, 12323, Hasegawa,M D1. 12383, 12490, 12675, 12804, 12823, 13086, 13113, . and Liu,J. J. 13256G, 13530, 13786, 14645, 14675, 15093, 15287, Biogeogr. 37 15332, 15398, 15419, 15503, 15719, 15833, 15950 (12), 2332-2344 (2010) GQ464276 Artificial A1a3, 160+A, 256, 295, 325, 327, 333, 355, 390, 391, 500, A1a3:325, 355, 390, 391, 500, 538, 693, 696; Wang,Z., (Yak and recombination: A1a_GQ4642 538, 693, 696, 4895, 5015, 7808, 8382, 8556, 13113, A1a_GQ464290:325, 333, 355, 390, 391, 500, 693, Shen,X., wild yak) mis-added 90 15089, 15093, 15719, 15833 696 Liu,B., Su,J., mutations333, Yonezawa,T., 355, 390, 391, Yu,Y., 500, 538, 693, Guo,S.,Ho,S.Y 696 from .W., Vila,C., haplogroup Hasegawa,M CD. . and Liu,J. J. Biogeogr. 37 (12), 2332-2344 (2010) GQ464288 Artificial C1a_GQ4642 110T, 117, 135, 142, 187, 193, 220, 248, 249, 255, 275, C1a_GQ464287:5 Wang,Z., (Yak and recombination: 87 292, 308, 309, 316, 325, 327, 333, 355, 390, 391, 500, 693, 5748 Shen,X., wild yak) missing 538, 693, 696, 719, 730, 810, 987, 1082, 1612, 1656, Liu,B., Su,J., mutations 2007A, 2398, 2629, 2647, 2852, 3498, 3502, 3676, Yonezawa,T., 5693, 5748 of 3760, 4493, 4881, 5015, 5390, 6491, 6500, 6761, 6764, Yu,Y., haplogroup 6866, 7271, 7409, 7941, 7950, 8400, 8415, 8481, 8484, Guo,S.,Ho,S.Y CD. 8523, 8556, 8577, 8848, 8875, 8938, 9756, 10083, .W., Vila,C., 10338, 10477, 10498, 10534, 10645, 10824, 11084, Hasegawa,M 11315, 11635, 11711, 12131, 12252, 12314, 12320, . and Liu,J. J. 12323, 12383, 12675, 12804, 12823, 13086, 13113, Biogeogr. 37 13530, 13786, 14645, 14675, 15093, 15287, 15332, (12), 15398, 15419, 15503, 15719, 15833, 15950 2332-2344 (2010) GQ464310 Artificial A1a1, A1a4, 247, 248, 266, 327, 881G, 4895, 5015, 7808, 8382, A1a1:160+A, 256, A1a1:247, 266, 881G; A1a4:247, 248, 266, 881G; Wang,Z., (Yak and recombination: A1a_JQ84602 8556, 13113, 15089, 15093, 15719 295, 15833; A1a_JQ846020:247, 248, 881G Shen,X., wild yak) missing 0 A1a4:256, 295, Liu,B., Su,J., mutations 15833; Yonezawa,T., 160+A, 256, A1a_JQ846020:1 Yu,Y., 295 of 60+A, 256, 295, Guo,S.,Ho,S.Y haplogroup 15833 .W., Vila,C., A1a. Hasegawa,M . and Liu,J. J. Biogeogr. 37 (12), 2332-2344 (2010)

GQ464311 Artificial C1a1_JQ8460 78, 100, 110T, 117, 135, 142, 187, 193, 220, 248, 249, C1a1_JQ846021: C1a1_JQ846021:78, 100, 256, 295, 881G Wang,Z., (Yak and recombination: 21 256, 295, 327, 810, 881G, 1082, 1612, 1656, 2007A, 255, 275, 292, Shen,X., wild yak) missing 2398, 2629, 2647, 2852, 3498, 3502, 3676, 3760, 4493, 308, 309, 316, Liu,B., Su,J., mutations 255, 4881, 5015, 5390, 5484, 5693, 5748, 5801, 6491, 6500, 325, 333, 355, Yonezawa,T., 275, 292, 308, 6761, 6764, 6866, 7271, 7409, 7941, 7950, 8400, 8415, 390, 391, 500, Yu,Y., 309, 316, 325, 8481, 8484, 8523, 8556, 8577, 8848, 8875, 8938, 9756, 538, 693, 696, Guo,S.,Ho,S.Y 333, 355, 390, 10083, 10338, 10477, 10498, 10534, 10645, 10824, 719, 730, 987 .W., Vila,C., 391, 500, 538, 11315, 11635, 11711, 12131, 12252, 12314, 12320, Hasegawa,M 693, 696,7 19, 12323, 12383, 12675, 12714, 12804, 12823, 13086, . and Liu,J. J. 730 of 13113, 13530, 13786, 14645, 14675, 14921, 15034, Biogeogr. 37 haplogroup C; 15093, 15287, 15332, 15398, 15419, 15503, 15719, (12), mis-added 15833, 15950 2332-2344 mutations 256, (2010) 295 from haplogroup A1. GQ464313 Artificial C1a1 110T, 117, 135, 142, 187, 193, 220, 248, 249, 255, 275, C1a1:333, 355, C1a1:9331 Wang,Z., (Yak and recombination: 292, 308, 309, 316, 325, 327, 810, 987, 1082, 1612, 390, 391, 500, Shen,X., wild yak) missing 1656, 2007A, 2398, 2629, 2647, 2852, 3498, 3502, 538, 693, 696, Liu,B., Su,J., mutations 333, 3676, 3760, 4493, 4881, 5015, 5390, 5693, 5748, 6491, 719, 730, 15950 Yonezawa,T., 355, 390, 391, 6500, 6761, 6764, 6866, 7271, 7409, 7941, 7950, 8400, Yu,Y., 500, 538, 693, 8415, 8481, 8484, 8523, 8556, 8577, 8848, 8875, 8938, Guo,S.,Ho,S.Y 696, 719, 730 9331, 9756, 10083, 10338, 10477, 10498, 10534, .W., Vila,C., of haplogroup 10645, 10824, 11315, 11635, 11711, 12131, 12252, Hasegawa,M C. 12314, 12320, 12323, 12383, 12675, 12714, 12804, . and Liu,J. J. 12823, 13086, 13113, 13530, 13786, 14645, 14675, Biogeogr. 37 15034, 15093, 15287, 15332, 15398, 15419, 15503, (12), 15719, 15833 2332-2344 (2010) Table S2. mtDNA haplogroup tree of dog and gray wolf. Nucleotide position numbers are relative to the EU789787. Mutations are transitions unless an exact base change is specified. Coding region mutations (np 1-15460) are shown in black; control region mutations (np 15461-16196) in blue. Mutations toward a base identical-by-state to the EU789787 are indicated with the prefix @. "W", "S", "M", "K", "R" and "Y" specify the heteroplasmic status of A/T, C/G, A/C, G/T, A/G and C/T at a certain site, respectively. Undetermined mutations are noted by "N". Deletions are indicated by a "d" after the deleted nucleotide position. Insertions are indicated by a "+" followed by the position number and type of inserted nucleotide(s). Repetitive and difficult-to-align regions np 15512-15513 and np 16019-16120 are not considered. The length variations in the C tract scored at np 1691 (1691+C), the G tract scored at np 15918 (15918d) and the A tract scored at np 1493 (1493+A) were not considered for phylogenetic reconstruction and were therefore excluded from the tree. EU442884, KF661078, KF661079, KF661080, KF661081, KF661088, KF661089 serve as an outgroups and are not considered in the tree. mt-MRCA

ABCEG-P 1689 3629 3941 8671

A 1454 6258 8226 8761 8992 10536T 11253 11405 13663 13780 14611 15780 15892

A1'2'3'4'5'6 3470 3599 4518 5010 6471 8426 10407 11966 12816 13264 13711 15438 15983

A6 767 3279 5031 5565 7361 8063 12119 12962 13566 13765 15007 15607 15645 16081

A6a 8762 15533 16086

767R EU408300

14895 EU789745

A6b 3626 10344 16182 EU789688

A1'2'3 2232

A2'3 10357 14386G

A3 2227 2837 3296 5427 5721T 5898 6884G 7115 7517 7719 8109 9136 15381 15610

A3a 6366

A3a1 4937 15608 EU789692

13271 15935 EU789684

A3a2 11842 EU789693

A3a3 9523 12294 14055 15607 EU789667

A3b 8318 11877 16005

A3b1 16172

1129 9175 9560 12587 EU789676

12587 15892 16140 KM113774

A3b2 9793 12293 15617 EU789682

A2 1454 5127 8049 8412 13205 13867 14332 15001 15632

A2a 7915

A2a1 1830 8512 11749

A2a1a 15607

A2a1a1 @7927 12548T 14539

3086 4280 6414 9106 9136 11353 13771 15089 15291 15474 EU789671

2663 3969 6630 7616 12743 EU789680

8273 8546A 10443 11676 13850 15078 15533 16079 EU789678

3218 12401 12710 14254 @15632 EU789743

4517 4934 7310 7594 7714 8034 9376 10260 10315 12874 13993 EU789674

A2a2 2801 14470

A2a2a 11141

3611 6066 7893 8501 10733 14394 15533 EU789681

472 5664 8161 8202 8252 9634G 10025 12320 KF661037

165 947 3107 6237 6408 7728 13430 13462 14428 16140 DQ480499 EU789776

A2a3 381 5595 6249 7691 8613 8767 8803 8878 11160 13034 15175 15309 15625 EU789673

A2b 10783 15645

A2b1 9796

A2b1a 10053

A2b1a1 8068 15821

A2b1a1a 3191A @3599 9517 11948 12794 15616

8762 EU789685

4485 5205d 10331 JF342852

A2b1a1b 11463 13876 EU789695

A2b1a1 2837 4368 4544T 4947 5595 12190 13957 15794 15822T EU789677

A2b1b 11676 12587 15089 15605

A2b1b1 15612 EU789694

3239 9377 13998 EU789690

6103C HM048871

8879 JF342862

A2b1b2 7238 16045 EU789691

A2b1c 7625 7896 15935 16049 EU789699

A2b2 2643 3239 4971 6069 6723 7553 8012 10265 11127 11412 11787 12632 EU789675

A1 3407 8324 8704 8765G 10920 12791 16140

A1a'b 2963 15607

A1a 3197 8282 10995 15217

A1a1 2684 15619T EU408281 EU408298 EU789719 EU789737 EU789736 JF342843

A1a1a 5368 15794 EU408270 EU408277 JF342872

A1a1a1 8808 13302T AY656755 EU789705 EU789711 EU789720 EU789726

14904 EU789708

15731 EU789698

2680d 5445 6066 8369 9912-9913d 9914 U96639

5972A 5973T EU408248

5913C 7024 JF342831

A1a1b 8773

A1a1b1 13765

A1a1b1a 10983 JF342813 JF342889

7687Y 12560 EU408302

1628d 10701 13105 JF342883

15004 EU789732

A1a1c 11942 13192 EU408246

4796 4815C 4816G EU789718

11957 JF342828

9912-9913d 9914 JF342905

3107 JF342812

A1a1d 8332 EU408305 JF342874 JF342900

2329 7924 15619C AY656742

3554 JF342846

15633 15935 JF342817

A1a1e 8912 9026 DQ480495 EU789780

A1a1f 15605

7172 13105 EU408282 EU408283 EU408284 JF342807

8865 EU789733

A1a1g 16005

7480 EU789765

7514 EU408261

A1a1h 15911 EU789734

2625 6066 @6471 13784 15645 16005 JF342822

5926R 12009Y EU408259

15598 EU789709

11822 12932 @15438 16005 EU789723

3246 5721T 5898 EU789729

4304 6732 EU408272

1591A 5036 7170 8938Y 12254R 16005 EU408273

12183C AY656747

8480 JF342834

A1a2’3‘ 4'5'6 16005 EU789735

A1a2 5232 EU789740

A1a2a 3521 6181 6633 8069 15631A 16141 EU789715

16012 EU789716

3436 AY656744

943 1378 9963 11924 13302 15791 EU789710

4941 7643 11460 13130 @16005 EU789725

5892 8465 13567 16013 EU789722

5602 10389 EU789730

6675 EU789731

A1a3 8537 10168 KF857179

A1a3a 6630 EU408295 EU408296

A1a3a1 @8537 JF342882

1134 EU789770

12461 13605G JF342808 JF342857 JF342865 JF342877

A1a3b 14477 EU408249

7594 AY656753

3965 7254 15375R 15438R EU408266

5333d 9826 JF342835

8704 KJ472767

A1a3c 8963 EU408286

1454 3374 JF342858

13850 JF342820 EU408264 EU408306 EU789779 JF342906

A1a4 1751d 11628 15533 DQ480496

3302 EU408287

A1a5 7195 AY656754

6614d 12336T JF342886

A1a6 150 12671 15274 JF342891

A1a7 4562 14181 15537 JF342810

9548 15911 EU789712

A1b 4608 8573

A1b1 13681 15605

9891 13597 14082 15613 15629 15818 @16140 EU789756

9424 11571 13430 13754 15010 15076 15572 15612 15620 15976 EU789768

2987T 4400 7611A 7612T 8632 9482 16005 16140+T JF342833

A1c 14980

A1c1 6402 16141

A1c1a 1351 4941 6555 7594 10614T 15600 16132+XC EU408280 EU789727 EU789728

A1c1a1 4304 15935 EU408304 EU789721 JF342851

A1c1a1a 12203 AY656748 DQ480498 EU408253 EU408271 EU789777 JF342819

2646 EU408263

9991 EU408250

12582R EU408294

5367R AY656738

6970 16088 JF342875

9913 JF342904

98T JF342832

5952 11694d 11870 JF342879

A1c1a1b 6441 15645 EU789706

A1c1a2 16005

A1c1a2a 10322 AY656751 FJ817361 FJ817362

5305d FJ817360

186S 187M FJ817358

107R @15983 @16005 FJ817359

15645

3745 14380 EU408265

8662 11835 EU408245

13750 EU789713

5011 14126 15730 EU789704

A1c1a3 1190 6042 10833 13517 EU408257

4367A JF342902

4230 EU408274

15632 EU789724

8342T JF342829

1266A 1285A 1358 JF342847

A1c1b 27 538 4862 6814T 7594 11927 15591 15601 15607 15629 16005 AY656737

A1c2 2204 7610 10263 11987

A1c2a 2952 6372 8120 8586 10380 11831 14915 15632

2680d 6186 6393 10389 16082 EU789679

6849 8214A 9962 16005 EU789687 A1c2b 774 2517 3247 7580 11735 12785 13104A 14428 15802 15935 16045 EU789686 A1d 4170 5856 6519 9839 12066 15486

A1d1 1662 4573 7924 10616 11175 12404 EU408275 EU789742

A1d1a 4136 10349 JF342867 AY656750 EU408276 EU408299

A1d1a1 463 6968 AY656746

5680A 13205 14674 15510Y JF342870

@9839 JF342878

1069 JF342871

877 JF342876

4403 JF342895

A1d1b 5938 15892

10489 15058 EU789683

6333 14278 JF342903

A1d2 5664 7529 8222 9931 10340 13930 16141

A1d2a 7146 EU789778

6741 8618 EU789689

16005 DQ480497

5925 8347G 8359 9589 10995 JF342866

A1e'f'g 16005

A1e 10632 11659 12302

A1e1 1757A 12113 12889

1386 3155 3431 6964 11433 15533 EU789696

2196 4061 6729 8698 12053 15611T EU789701

A1e2 766 2456 6081 7730 8282 EU789717 JF342863

A1f 2759 3260 6339 8837 12407 14183 15619 JF342823 EU789703

2840G 4058 15341 16012 EU789700

5220d 14344 15632 EU789714

A1g 2834 6303 8243 9897 11660A 11816 JF342885

A1g1 15612 A1g1a 7384

A1g1a1 15197 JF342896

9043 @16140 AY656741

6684 9337 14537 EU789707 EU789784

A1g1b 1522 3677 8851 11910 13750 14766 @16005 DQ480491

A1g1c 1766 4361 7451

3600 EU408289

8048 EU408290

A1g1d 132 4941 AY656749

9296A 9330 JF342830

A1g1e 5751 11925 12947 15911 16013 EU789702

A1g1f 3086 7949T 9839 9962 13710C 14309T JF342855

A1h 1645 2298 3359 3600 3750 4770 6069 6378 9866+A 10587 11139 15731

7186 8015 15610 EU789767 EU789771

3614 6882 15935 16005 16013 EU789754

A1i 16141

A1i1 1683 8806 12659 15103 15935

A1i1a 377 6883 7818 8576 10516 16045

A1i1a1 3490 8143 9946 12317 14904 JF342892

13064A JF342899

10034A 10473 11529 14674 15533 15607 15911 @15935 JF342836

A1i1b 273 5499 6111 8096 11942 14629

A1i1b1 2394 11965 12641 12704 JF342816

14005 KF661036

2603 3258 5162+G 7658 8254 EU789759

A1i2 94 6181 7421 8423A 10866 14395 EU789744

A1i3 2646 4220 6513 7247 9482 9763 11031 13303 14758 14986 15533 15607 16005 EU789697

A1j 161 1824+A 3974A 5713 8304 8521 10993 13798 13824 14549 15001 15171 15818 EU789741

A4'5 10515

A4 6555 6573 7292 9866+A 11895 12834

A4a 7082

A4a1 1522 5260 5700 7553 7586 10284 11375 11831 11849 13300A 14791

A4a1a 768 3047 11230 11232 11263 13769T 14540 14731 15089 15607 15761 15787

A4a1a1 2832 10980 11095 EU789669

15217 EU789664

A4a1a2 9005 12667 14882 14980 15601

8213 15645 EU789755

7103 8969 EU408262

@2981 @9866+A @14731 JF342848

A4a1b 2176 2632 4071T 4391A 7187A 8755 9631 @9866+A 10057 12432 13038 14478 15645 KF661084

A4a2 9325 @9866+A 16005

4518N 8766 13802 KF661083

466 1129 3081 3663 4941 7167 8526 13322 14719 14767 15196 KF661086

A4b 1081 1454 1585 1863 4760 4950 8420 10266 12391 12623 13049 13989 15287 15630 15828 15911 16005 JF342811

A5 1134 1196 1830 2190 3239 3663 4133 4199 4538 5433 6654 8947 9757 10363 10866 11771 12548 13325 14359 14503 15319T 15939

A5a'b 16005

A5a 5403 8039 11788 16102

A5a1 6117 7569 10959 11945 13136 13355 16013

4667 EU789668

6408 8004 8438 12331 14548 15698 EU789665

A5a2 194 1403 10297 10740 11427 11990T 12521 13121 13444 @14359 EU789663

A5a3 1813 3633A 12197 12628 13538 13732 14365 14968 15605 @15939 EU789666

A5b 4766 8606 10737T 11076 11166 11876 15229 15605 EU789670

A5c 1697 4061 5367 6390 6762 9836 13193 EU789738

A7 291 2840A 2981 3962 4119 7655 7927 8091 8510 11164 12387 12416A 13469 13588 13809 13951 15115 15170 EU789787

G 3629 4769 @7927 16139

G1 1196 @2981 4520 4941 6054 7116 7676A 7924 7950G 8147 8161 8192 8391 8465 8777 9730 9790T 10003 10054 10993 11748 11870 12857 13541 13678 13735 14665 14806 14998 15086 15088 15591 15593T 15605 15607 15632 15817 15935 16141 16142

408 4571 15467+C 15610 KF661051 KF661050

4823 13532 14467 DQ480507

G2 4667 9899 15575

557T 6699 7992 12128 13100 15591 15761 15912 KF661085

767 1230 1977 2646 2837 3158 3593 3999 4187 4541 4658 4674 4890 5673 6948 7182 7307 7723 8286 8378 9106 9364 10224 10288 10692 11822 12137 12198 12403 12892 13642 13732 13774 14384 14389 14467 15106 15313 15341 15593 15910 15911 16179 DQ480506

BCEH-Q 381A 1756 8878 13621

BCEH-P 16 15607 15935

BCEH-O 8222C

BEH-N 4278 8570 8737 8818 10443

BEH-M 2813 12668 15632

BEH-L 4391 14674

BHIJKL 15575

BHIJ 15795

BH 16140

B 2185 4205 11951 15612 15623

B1'2 6765 13597 15592 15619

B1 445 4647 9220 9826 10260 10545 @14611 14933 16141

B1a 3029C 7015 8102 11179 EU408301 EU789649 JF342837

B1a1 9253 @15575

B1a1a 12462

B1a1a1 15467+C EU789644 EU408297

11124T 15939 DQ480490 EU789785 AY656745

120 EU789769

13642 EU408307

2680d 9913-9914d KF907307 KF926378

1076A 3389 7016+G 15341 16141+3T EU408268

3081 11493 15621 EU789638

B1a2 14546 EU408278

734 EU408260

4334 9199 9421 EU789642

4518 6706 JF342849

926 @10545 10908 10920 11629+A 12105 JF342890

B1a3 2463

12897 EU789645

4518 8150 JF342873 JF342860 JF342898

B1a4 10560 13429 EU789652

13781 @15607 15608 EU408258

15795Y EU408308

@14933 AY656743

1088+T 13805 JF342888

1451C 7658 JF342884

15525C 15905d JF342815 DQ480494 DQ480500 EU408285 EU789775 EU789781

B1a5 10776 AY656739

B1a5a 4518 JF342856

761 JF342861

4710 AY656740

12105 EU408292

15983 FJ817363

186S FJ817364 EU408254

B1a6 12263 14803 EU408256

7146R 8133Y EU408255

B1a7 8304 EU789653 JF342854

5043 8384T EU408247

3805 EU408252

5907 15533 AY656752

4467 EU408269

4881 9029C EU408303

15983 EU789639

3248 EU789643

12010 EU789646

15438 JF342825

15086 15378 @15795 JF342864

964C 6942 JF342844

14392 JF342842

399 @8570 14465 JF342845

B1b 5601 EU789761

B2 374

B2a 3221 16018

B2a1 13334

B2a1a 4941

4013 4151 EU789640

2241 10993 13205 16019 EU789647

7337 EU789651

B2a1b 10320 10322 13133A 15533 15606

9985 15574 @15623 EU789648

7914 11695 13573 14091 EU789739

B2a1c 7915 8477 13821 14753 @15623

5511 15307 EU789641

14082 @16018 EU789650

B2a2 1813 2293 4204 4518 4592 5300d 6898d 11061 12569 12860 13459T JF342838

B2b 3359 5367 6530 11771 @13621 15802 EU789757

B2c 3329 3926 7268 7676 15253A KF661047

B3 8618 9805 10692 11304 15802 @15935 16141

1033C 1808A 1897R 1908M 3001 3126 3501 4653 5283C 5285T 7433 7730 8710 9288 12854R 14460 @15575 15635 15911 15980C 16143 KC461238 6387 8265 8938 9325 9982 12890 13120 13226C 13227G 13231T 13232 13236G 13238T 15619 15748 16005 KC896375 H 1697 7514 12576 15605 15612

H1 3930 4367 6883 8524 8890 8894 9682 11160 15592

H1a 6832 9250T KF661077

14984 KF661063

20 14980 KF661070

11636d JF342908

4398 9364 14575A 14592T 14625A 14677G 14783 @16140 DQ480508 KF661061 KF661076

H1b 13477 14797 15058 KF661056

H1c 2196 2311 11469 KF661062 KF661067

H2 1120 2184 2778 3050 3633 4370 6414 7924 10263 11871 12731 14287 15593 15602 15639 KF661058

15912 KF661075

IJ 15623

I 249 4076 4400 8791 9805 11726 12389 13298 15086 @15575 15607T 15814 @15935 DQ480505

J 273 3182 4256 5358 6970 8879 9291 9732 10779 11073 11277 14743 15533 15601 15605 15847 KF661046

KL 9217 16140

K 4367 4398 5297A 5745 6049 7112 7854 7924 8084 8156 10021 12857 13632 15001 KF661057 KF661071 KF661073

K1 15623

3545 15628 15792 KF661074

15265 KF661066

2176 2861 7619 12294 AB499820

2070 8316 11509 14788 14888 AB499819

14197 @15632

7586 KF661068 KF661069

16130 16133 KF661064

12718 KF661072

K2 14218 16130 16133 KF661059

L 4274 4748 7112 9814 12010 12704 14082 15034 15415 15533 @15575 15623 15627 16141 KF661055

E 1691+C 6171 6855 9931 12905 13105A 15232 15791

E1 84 1075 3926 4097 10602 11178 11795 12009G 13082 13175 15572 15575

E1a 16140

15847 16141 DQ480504 KF661049

@1691+C 4960 15912 KF661044

E1b @1691+C 8232 10728 12392 KF661052

4146 KF661040

E2 933 3540 3759 5892 6193G 9811 11529 12580 12909 15533 15612 16140 EU789662

N 1069 3245 3392 7226 7574 7961C 9505 9583 10171 13436 15208 15623 15912 15983

N1 1748 8887 12860

N1a 7685 10659 15821 @15892

4352 4355 12236 12461 @15623 KF661042

1784 8444 9630 9823T 11660A 11947 15533 15619 KF661043

N1b 129 930 2969 7370 7953 14518 15533 15939 KF661054 KF661053

N2 1745 2798 4133 4496 5499 5601 5796 6165 7941 8887 9730 12536 KF661041

M 1403 1447 2656 3023 3490 5385 6171 6597 6970 7953 10114 10413C 13821 13879 13903 14386 14410 14765 15188 15341 15533 15753 15821 @15892

15106 EU789788

5858 6994A 7045d 7882C 8470 8611 8683 9013A 9197 15069 15296C GQ374438

C 557 1204 1748 4235 4504 5625 7059 9223 9709 10779 11325 11403 12275 12333 12639 14650 14695 15188 15511 15591 15619 15630

C1'2 1709 9866+A 10788 11575C 12125

C1 7113 7187A 11842 13115 16174

C1a 9376

C1a1 3302

C1a1a 13509

15533 EU789657

@15591 EU789660

7187A 10902G KF907309

C1a1b 3883+C 8366 8369 EU789762

C1a2 @15619 EU789753

3932 15983

@13115 EU789752

4076 EU789751

C1b 1046 10866

C1b1 11434 EU789658 EU789766

@7113 15911 DQ480489 EU789786

C1b2 7364 11103 15601 EU408293

6609 @9866+A @11575C @15511 @16174 JF342818

C1c 14126 14519T EU789760

4205 8864 12855R JF342839

C1d 12251 EU789661

C1e 1151 6609 7838 EU789659 EU789763

C2 3495 6712A 6741 6864 11250 11962 12349A 13794 15375 15690 EU789748

C2a 12416G

4349 9836 DQ480501 EU789774

120 9836 EU789764

C2b 14430 EU789746

8081 12009 EU789749

C2c 607 10266 12001 13322 EU789750

6744 10254 EU408291

C2d @14695

9836 13325 14753 @15511 JF342880

5370 @7059 @11575C JF342840

C2e 14467 EU408267

C2f 3389 8315A EU408279

C2g 15451 EU789747

C2h 15791 16024A EU789772 EU789782

C2i 3407 DQ480493

3635 @4504 4518 8261 @11575C @15511 JF342887

C3 996C 1011 1014 1838 5375 5562 10343 13127 14611N KF661094

O 715 2771 2829 4766 5778 6114 7947A 8737A 9121 10036 11046 @11405 11771 11834 12147 12971 13523 15069 15089 15127 15591 15600 15601 15605 15632 15911 16059

14611N KF661065

14543 KF661060

P 7020 7658 8971 9574 9934 10962 11852 12320 14467 15591 15794 KF661090

Q 767 3314 3476 4947 6948 7232 7526 8391 9805 10278 14022

Q1 1685 2196 2945 3533 4497 4904 5278 7109 7463 @8226 8566 9079 11477 12010 12407A 13166 13265A 13331 13430 13617 14440 15378 15601 15794 15797 15800

15912 15935 KF661038

767N 4748 KF661039

Q2 1251 1943 1944 2922 6972 11454 13987 14579 14809 15912 15935 16146 KF661082

D 4485 4592 5938 8971 10728 14507 15607 15939

D1'2'3'4'5 162 2855 3035 3452 3938 3951 5520 6093 6861 8391 8783 10162 10198 10314 11987 13597

D11'2'3'4 15616

D1'2'3 11803 15612 15795

D1'2 3466 4596 8854 10349 11900 12668 15605 15935 16139

D1 658 1873 15614 15619 15623

D1a 4467 6054 6768 6882 8109 9836 9887 10063 10683 12821 12971 14650 14809 15290

D1a1 2656 @14507 EU789656 EU789773

15911 DQ480502 EU789783

15615 DQ480492

D1a2 70 8521 @14507 14753 16086 EU408288

D1b @291 1585 1617 3695 4058 6855 7610 8028 11834 13244 14507 14660 15314 15377T @15612 15911

D1b1 2546 6558 7479 8554 11160 13302 14980 @15614 15983 KJ139386 KJ139387

15608 KJ139385

D1b2 4920 8775 KJ139384

D2 353T 2196 2198 3827 10466 10674 12554 12606 13912 @13951 14473 15911 16019 16022

D2a 125 @2198 4538 4947 11978 12209 12413 15610 @15935

4380

11232 EU789655

@3629 4612 15983 16018 KJ139388

2329 3158 @4485 4518 11937 12413 13389 JF342859

D2b 2211 3119 3956 4793 8521 11292 11544 12254 13273G 15297 EU789654

D3 15533 15591 16017T KF661087

D4 1157 7939 8210 8477 12572 15591 15828 16162

3365 4025 11326 11515 11838 13575 13863 15605 15912 KF661048

3490 5406 10866 13969 15935 KF661045

D5 12 467 607 2552 3616 4348 5122 5693 7121 8240 8381 9172 9403 10240 11630 12635T 12689 13325 15492 15608 16175 KF661095

D6 3 12832 15591 15828 @15892 KF661092

F 2731 3347 4139 4401 4767 5829 6441 6462 7733 7924 8213 8474 @8761 9515 9796 10467 10704 10993 11460 11464 11864 11951T 12065 12113 12743 12832 12860 13244 13633 13792 14344 15228 15313 15493 15591 15608 15632 15983

F1 9220 11082 12698

F1a 5006 5305 6138 8775

F1a1 2535 2837 8298 8812 10025 15821

F1a1a 8202

6792 8465 AB499817

661 664 756 797 799+C 890T 1755 1995 2124 2815G 2829 4010 4041 4076 4109T @4139 5943 6032 6113 6117 7525 8465 10721 10756 11022 13352 13369 16140 AB499822

F1a2a 4058 8034 8465 10614 AB499825

F1a2 1324A 4467 13436 15911

11719 13677 15037 @15632 AB499823

364 896 1493d 4386T 7835 10057 12239 14278 15533 AB499824

F1b 1553 1778 3210 4755 8999 10314 12975 13945

4518 9367 10407 @10467 @10536T @11082 @11253 AB499816

2177 2837 4481 4502 4508 4516A 4592 4596 4619 4700 6487 7151 8708 11069 11107 11142C 11831 12372 12442 13721 13798C 14873 14885 15306 15388 AB499821 F2 161 1403 1493d 2698 3899 4378 7559 8297 9147 11079 11199 11261 13565 14381 14543 14626 15296 15533 15911 16140 AB499818

Table S3. mtDNA haplogroup tree of goat. Nucleotide position numbers are relative to the GU068049. Mutations are transitions unless an exact base change is specified. Coding region mutations (np 1-15430) are shown in black; control region mutations (np 15431-16642) in blue. Mutations toward a base identical-by-state to the GU068049 are indicated with the prefix @. "R" and "Y" specify the heteroplasmic status of A/G and C/T at a certain site, respectively. Deletions are indicated by a "d" after the deleted nucleotide position. Insertions are indicated by a "+" followed by the position number and type of inserted nucleotide(s). Undetermined mutatiions are noted by "N". The length variations scored at np 177 (177-178d),180 (180T) and 181 (181A) were not considered for phylogenetic reconstruction and were therefore excluded from the tree.

mt-MRCA

A 1850 2208 3195 3469 5602 7840 8056 8079 8960 9827 10639 12383 13741 13756 14746 15004 15543 15616 15631 15636 15637 15728 15807 15843 15920 15930 15950 15969 15975 15981 15983 16006 16010 16019 16027 16040 16045 16232 16477 16514

A1 196 15974

A1a 3634 8759 10433 11128 14497 15767 15976 15980 16019 16027 16028 16083 16363

A1a1 5725

A1a1a 6894 15602 15616 15636

@13034 15810 15930 16150 KJ192218

15843 15973 15981 KJ192219

@196 1912 14053 15870 16504+C KJ192226

7025 8070 9369C @10028 15616 15636 15870 16001 16045 KJ192227

A1b 16435

A1b1 7214

A1b1a 2971 9738 14865

1237+A

5580Y 11128 12362 15616 15636 15973 @16028 KJ192217

10028N 11062N 15811 15887 15920 15950 @15974 15975 15981 KJ192234

11128 15616 15636 15920 15973 @16028 16440 16447 KJ192235

A1b1b 7118 15888

1156 4084 4564 7589T 8571 9224 10729 11128 13390 16010 16019 KJ192230

3108 3396 6109 6523N 7185 11062N 13663 15930 16232 16281 @16435 16504+C 16538C KJ192231

A1b2 2120 3892 4033 9308 11128 11258 15616 15636 15749 15898 16477 KJ192216

A2 15811

A2a 2190 15833 15873 15969 15975 15978 16045 16435 16638+T

A2a1 15616 15636

9860 15055 KJ192211

7723 10028N 12764 15622 15686 16062 KJ192210

3240 8604 9257 9860 11128 12158 15836 15898 15930 15967 16003 16021 16119 KJ192209

A2b 4333 10945 15969 16043

A2b1 8735 14617 15728 16435

A2b1a 8134 9015 10391 11128 11624 12566 14917 15981 16010

16262 KJ192220

@6523 14756S 15295 15616 15636 KJ192221

605 2619 2767 7451 10945N 11062N 11567+A 15759 15893 KJ192232

A2b2 11128 15616 15636 16026

A2b2a 4587 12659 15534 15821 15976 16010

8939 9083 KJ192212

6700 11835R 15950 16435 KJ192213

A2b2b 6112 14479A 15974 16027 16435

7727C 10145 15873 15984 KJ192222

1932K 3444R 10493 12320M 15873 KJ192223

A2c 11128

A2c1 16435

2312 13034N 13945 15616 15842 16021 16232 KJ192229

1671 3040 10723C 10726 11128N 13166 15759 15976 15983 16019 KJ192228

A2c2 15920

A2c2a 5731 6187 8915 @15811 15921 15972 @16000 16045 16458 16504+C

6513C 15912 KJ192224

3345 9221 KJ192225

A2c2b 11374 13714 15975 15981 16303

8586 9863 12404 15616 15636 15896 KJ192214

4606 7792 9618A KJ192215

A2d 8596 9065 15616 15636 15930 15950 15975 15978 15981 15982 15994 16038 16151 16435 16504+C KJ192233

A3 4942 6523 10028 11062 12380 13034 16000 16028 16066 GU068049

B 205 1120+C 4033 6097 7053 7343 7661 7886 8481 8636 8731 8819 9011 10480 10687 10814 11128 11365 11691 11702 11872 13100A 13178 13280 13286 13681 13762 15220 15893 15913 15947 15965 15973+T 15977d 15982 16011 16037 16083 16281 16458

7301 9673 11173 12584 14728 14873 15833 15864 15967 15973 KF952601

2850 8704 11567+A 13964 14461 14795 15747 15992 16435 16485 16504+C GU295658

C 165 213 944 1026 1114 1118-1119d 1192 1369 2886C 3003 3132 3294 3600 3771 4570 4627 4708 4714 4891 5713 5776 6031 6094 6325 6391 6415 6538 7118 7658 7918 8114 8265 8301C 8487 8852 9062 9112 9206 9347 9548 9600 9995 10107 10303 10357A 10450 10546 10564 10951 11074 11128 11257 11569 11957 11969 12146 12314 12362 12386 12539 12626 12638 12791 13001 13157 13292 13502 14044 14290 14386 14518 14527 15053 KJ192236 15554 15662 15675 15689 15699 15744 15763 15771 15797 15822 15862 15864 15866 15870 15909 15973 15974 15984 15994 @16000 16003 16022 16026 16038 16043 16084C 16150 16151 16325 16363 16376 16440 16448 16460 16495 16504+C

Table S4. mtDNA haplogroup tree of yak.

Nucleotide position numbers are relative to the GQ464259. Mutations are transitions unless an exact base change is specified. Coding region mutations (np 893-16322) are shown in black; control region mutations (np 1-892) in blue. Mutations toward a base identical-by-state to the GQ464259 are indicated with the prefix @. "R" and "Y" specify the heteroplasmic status of A/G and C/T at a certain site, respectively. Deletions are indicated by a "d" after the deleted nucleotide position. Insertions are indicated by a "+" followed by the position number and type of inserted nucleotide(s). The length variations in the C tract scored at np 751 (751+C, 751+2C) and 892 (881G, 892+C, 892+2C, 892d, 892+GGTGGG) were not considered for phylogenetic reconstruction and were therefore excluded from the tree. GQ464260 appears remote to ABCD and serves as an outgroup sequence which is excluded from the tree. mt-MRCA

AB 187 248 255 275 292 308 309 316 325 355 390 391 500 538 693 696 719 730 810 1612 2629 3498 3676 5390 6491 6761 6764 7409 7941 7950 8400 8481 8484 8523 8875 8938 10477 10498 10534 12314 12323 12383 12823 13086 13530 13786 14675 15287 15398 15503

A 295 8382 15089

A1 160+A 256

A1a 4895 7808 GQ464271 GQ464274 GQ464277 GQ464285 GQ464308

A1a1 248 GQ464281 GQ464301 GQ464312

249 253 8247 GQ464275

313 390 11900 12454 14244 GQ464283

508 GQ464302

708 GQ464299

9033 14049 GQ464309

A1a2 314

@327 GQ464279

761+A 12182A GQ464292

A1a3 333

282d GQ464289

4381 5926 8968 EF494179

6929 GQ464295

538 KJ463418

A1a4 @160+A GQ464273

159 GQ464294

266 JQ846020

505G 3130 7484 10176 10251 JQ692071

538 GQ464290

2029 GQ464263

9342 12672 14606 GQ464280

9764 GQ464307

10507A 15824 GQ464305

A1b 172 745 7598 13308

A1b1 163 4780 GQ464298

284 12675 13062A GQ464306

A1b2 11678 GQ464282

A1c 111 10820 11231 13867 14534 GQ464254

4689 GQ464255

A2 333 2302 10588 14241

266 15619 GQ464246 GQ464264

281 11699 13110 GQ464247

B 15833

B1 2866

B1a 266 397 4258 10075

B1a1 247

B1a1a 1696 14903

B1a1a1 8999

B1a1a1a 9140

355 2220 6106G 7808 EF494178

11137 EF494177

6512 GQ464268

B1a1a2 248 318 708 12270 GQ464314

B1a1b 11939 15344 GQ464248

B1a2 390

305 15684 GQ464258

396 1480d 5400 JQ437480

7220 10879 GQ464297

B1a3 267 GQ464286

B1a4 896 5177 12208 16029 GQ464256

B1b 328 5423 15074

B1b1 15397 GQ464270

10477 GQ464272

B1b2 11330 GQ464252 GQ464253

B2 327

160+A 3877 4823 6971 9730C 10504 10820 14094 GQ464265

5015 8556 13113 15093 15719 GQ464259

B3 248 314 390 696 708 3970 7469 7808 7917 11291 15959 16088 GQ464266

CD 135 142 193 987 1082 1656 2007A 2398 2647 2852 3502 4881 5693 5748 6500 6866 8415 8577 8848 9756 10083 10338 10645 10824 11315 11711 12131 12252 12320 12675 12804 14645 15332 15419 15950

C 117 220 249 333 3760 7271

C1 110T

C1a 4493 11635 GQ464303

C1a1 12714 15034 GQ464269 GQ464278

5484 5801 14921 JQ846021

440 4529 9161 GQ464284

131 3853 15336T GQ464300

11084 GQ464287

C1b 218T 4421

34 8821C JQ846022

486 2694A 13569 14636 GQ464250

1970 GQ464261

C1c 423 13146T 15441 GQ464293

C2 1147 5222 7836

3099 10453 GQ464262

8256 GQ464257

D 310 @7409 11554

D1 8655

6960 7424 15242 GQ464296 GQ464291

333 10537 15294 GQ464304

D2 333 @355 4525 6485 GQ464249

Table S5. Potential errors detected in next-generation sequencing data.

Sequence Platform Potential Error Haplogroup Most Variants Missing Diagnostic Private Sources

Matched Sequence Mutations

KF163061 Roche/454 Life Phantom T1b1_KF163061_KF16 169, 215+TCC, 231+C, 587+C, 1599-1600d, 2536A, 6050, 7542, 9682C, 12468, 12469, 13310C, 14348, 16022, 16050, 16084, 16085, T1b1_KF163061_KF163076:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 3076 16113, 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 231+C, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163062 Roche/454 Life Phantom T1b1b1b_KF163062_K 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 7542, 8710, 9682C, 12468, 12469, 12525, 13201, 13300, 13310C, 14523T, T1b1b1b_KF163062_KF163086:215+TCC, 234+T, 1599-1600d, 16084, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: F163086 16022, 16050, 16056, 16084, 16113, 16122, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163063 Roche/454 Life Phantom T1b1, T1b1_KF163063 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 7542, 9682C, 13310C, 16022, 16050, 16113, 16200+A, 16255, 16301 T1b1:215+TCC, 234+T, 1599-1600d, 16200+A, 16301; T1b1_KF163063:215+TCC, 234+T, 1599-1600d, Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16200+A Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163064 Roche/454 Life Phantom T1b1b1b_KF163064 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 3069, 7542, 8710, 9682C, 12525, 13201, 13300, 13310C, 14523T, 16022, T1b1b1b_KF163064:215+TCC, 234+T, 1599-1600d, 16084, 16202+G Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16050, 16056, 16057, 16084, 16113, 16202+G, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16202+G. ONE 8 (8), E71956 (2013)

KF163065 Roche/454 Life Phantom T1b1b1b_KF163065 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 3069, 4361, 7542, 8710, 9682C, 12468, 12469, 12525, 13201, 13300, T1b1b1b_KF163065:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 13310C, 14051, 14523T, 16022, 16050, 16056, 16084, 16085, 16113, 16200+A, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163066 Roche/454 Life Phantom T1b1b1b_KF163066 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 3069, 7542, 8188, 8710, 9682C, 12468, 12469, 12525, 13201, 13300, T1b1b1b_KF163066:215+TCC, 234+T, 1599-1600d, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 13310C, 14523T, 16022, 16050, 16056, 16085, 16113, 16200+A, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163067 Roche/454 Life Phantom T1b1b1b_KF163067 169, 173, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 7542, 8710, 9682C, 12468, 12469, 12525, 13201, 13300, 13310C, T1b1b1b_KF163067:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 14523T, 16022, 16050, 16056, 16084, 16085, 16113, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163068 Roche/454 Life Phantom T1b1b1b_KF163069 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 3270, 3413N, 3414N, 3415N, 3416N, 3417N, 3418N, 3419N, 3420N, T1b1b1b_KF163069:215+TCC, 234+T, 1599-1600d, 3413N, 3414N, 3415N, 3416N, 3417N, 3418N, Horsburgh,K.A., Prost,S., (Cattle and Sciences GS mutations: 3421N, 3422N, 3423N, 3424N, 3425N, 3426N, 3427N, 3428N, 3429N, 3430N, 3431N, 3432N, 3433N, 3434N, 3435N, 3436N, 3437N, 3419N, 3420N, 3421N, 3422N, 3423N, 3424N, 3425N, 3426N, 3427N, 3428N, 3429N, 3430N, 3431N, Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, 3438N, 3439N, 3440N, 3441N, 3442N, 3443N, 3444N, 3445N, 3446N, 3447N, 3448N, 3449N, 3450N, 3451N, 3452N, 4840Y, 7542, 3432N, 3433N, 3434N, 3435N, 3436N, 3437N, 3438N, 3439N, 3440N, 3441N, 3442N, 3443N, 3444N, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. 8710, 9682C, 12361, 12468, 12469, 12525, 13201, 13300, 13310C, 14523T, 16022, 16050, 16056, 16084, 16085, 16113, 16200+A, 3445N, 3446N, 3447N, 3448N, 3449N, 3450N, 3451N, 3452N, 4840, 16084, 16085, 16200+A ONE 8 (8), E71956 (2013)

16255, 16316

KF163069 Roche/454 Life Phantom T1b1b1b_KF163069 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 3270, 7542, 8710, 9682C, 12361, 12468, 12469, 12525, 13201, 13300, T1b1b1b_KF163069:215+TCC, 234+T, 1599-1600d, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 13310C, 14523T, 16022, 16050, 16056, 16113, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163070 Roche/454 Life Phantom T1b1b1b_KF163070_K 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 7542, 7622, 8710, 9682C, 12468, 12469, 12525, 13201, 13260, 13300, T1b1b1b_KF163070_KF163091:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: F163091 13310C, 14523T, 16022, 16050, 16056, 16084, 16085, 16113, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163071 Roche/454 Life Phantom T1b1b1b_KF163071 169, 190, 216Y, 221+CCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 3270, 7542, 8710, 9682C, 12361, 12468, 12525, 13201, 13300, T1b1b1b_KF163071:221+CCC, 234+T, 1599-1600d, 16202+G Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 13310C, 14523T, 16022, 16050, 16056, 16113, 16202+G, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16202+G. ONE 8 (8), E71956 (2013)

KF163072 Roche/454 Life Phantom T1c_KF163072 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 4586, 6025, 9682C, 9906, 10907, 13310C, 15460, 16050, 16084, 16085, 16113, T1c_KF163072:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16121, 16122, 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163073 Roche/454 Life Phantom T1b1b1c 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 7542, 9682C, 12468, 12469, 13201, 13310C, 14523T, 15156, 16022, 16050, 16113, T1b1b1c:16148 T1b1b1c:215+TCC, 234+T, 1599-1600d, 15156, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163074 Roche/454 Life Phantom T1b1b1c 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 7542, 9682C, 13201, 13310C, 14523T, 16022, 16050, 16113, 16148, 16200+A, 16255 T1b1b1c:215+TCC, 234+T, 1599-1600d, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163075 Roche/454 Life Phantom T1b1b1a2_KF163075 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 5225, 7542, 9682C, 12402, 12469, 13201, 13310C, 14523T, 14771, 16022, 16050, T1b1b1a2_KF163075:215+TCC, 234+T, 1599-1600d, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16056, 16057, 16113, 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163076 Roche/454 Life Phantom T1b1_KF163061_KF16 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 6050, 7542, 9682C, 12468, 12469, 13310C, 14348, 16022, 16050, 16084, 16085, T1b1_KF163061_KF163076:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S., (Cattle and Sciences GS mutations: 3076 16113, 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163077 Roche/454 Life Phantom T1b1b1b_KF163077 169, 190, 215+TCC, 234+T, 497, 587+C, 1075C, 1599-1600d, 2536A, 6391, 7542, 8710, 9095, 9682C, 12525, 13201, 13300, 13310C, T1b1b1b_KF163077:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 14523T, 16022, 16050, 16056, 16084, 16085, 16113, 16121, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163078 Roche/454 Life Phantom T1b1b1b_KF163078 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 3270, 7542, 8710, 9682C, 12361, 12468, 12469, 12525, 13201, 13300, T1b1b1b_KF163078:215+TCC, 234+T, 1599-1600d, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 13310C, 14523T, 16022, 16050, 16056, 16085, 16113, 16121, 16122, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163079 Roche/454 Life Phantom T1b1b1b_KF163079 169, 173, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 7542, 8710, 9682C, 12525, 13201, 13300, 13310C, 14523T, 16022, T1b1b1b_KF163079:215+TCC, 234+T, 1599-1600d, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16050, 16056, 16113, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163080 Roche/454 Life Phantom T1b1b1bc_KF163080 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 6475, 7542, 8710, 9682C, 12468, 12469, 12525, 13201, 13300, 13310C, T1b1b1b_KF163080:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 14523T, 16022, 16050, 16056, 16084, 16085, 16113, 16122, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163081 Roche/454 Life Phantom T1d_KF163081 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 6235, 9682C, 10347, 10657, 12468, 13310C, 16050, 16084, 16085, 16113, 16121, T1d_KF163081:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163082 Roche/454 Life Phantom T1_KF163082 169, 215+TCC, 234+T, 299, 587+C, 1599-1600d, 2536A, 3682, 9201, 9682C, 12468, 12469, 13310C, 16050, 16113, 16200+A, 16248, T1_KF163082:215+TCC, 234+T, 1599-1600d, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16255, 16260 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163083 Roche/454 Life Phantom T1b1b1b_KF163083 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 3270, 7514, 8710, 9682C, 12361, 12525, 13201, 13300, 13310C, 14523T, T1b1b1b_KF163083:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16022, 16050, 16056, 16084, 16085, 16113, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163084 Roche/454 Life Phantom T1b1_KF163084 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 7542, 9682C, 13310C, 13395, 16022, 16050, 16057, 16068, 16084, 16085, 16113, T1b1_KF163084:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C. Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163085 Roche/454 Life Phantom T1b1b1b_KF163085 169, 190, 215+TCC, 234+T, 249, 296N, 297N, 497, 587+C, 1599-1600d, 2536A, 7542, 8710, 9682C, 12468, 12469, 12525, 13005, 13201, T1b1b1b_KF163085:215+TCC, 234+T, 296N, 297N, 1599-1600d, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 13300, 13310C, 14523T, 15951, 15953G, 16022, 16050, 16056, 16085, 16113, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163086 Roche/454 Life Phantom T1b1b1c 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 7542, 8710, 9682C, 12525, 13201, 13300, 13310C, 14523T, 16022, 16050, T1b1b1b:215+TCC, 234+T, 1599-1600d, 16122, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16056, 16113, 16122, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163087 Roche/454 Life Phantom T1b1_KF163087 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 6050, 7542, 9682C, 13310C, 14348, 16022, 16050, 16084, 16085, 16113, 16200+A, T1b1_KF163087:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163088 Roche/454 Life Phantom T1b1b1c_KF163088 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 7542, 9682C, 12468, 12469, 13201, 13310C, 14523T, 16022, 16050, 16084, 16085, T1b1b1c_KF163088:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16113, 16148, 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163089 Roche/454 Life Phantom T1b1b1a2_KF163089 169, 179, 215+TCC, 234+T, 587+C, 1481, 1599-1600d, 2536A, 7542, 9682C, 10460, 12468, 12469, 13201, 13310C, 14523T, 16022, T1b1b1a2_KF163089:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16050, 16056, 16084, 16085, 16113, 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163090 Roche/454 Life Phantom T1b1b1b_KF163090 169, 190, 215+TCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 3270, 3481, 7542, 8710, 9682C, 12468, 12469, 12525, 13201, 13300, T1b1b1b_KF163090:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 13310C, 14523T, 16022, 16050, 16056, 16084, 16085, 16113, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163091 Roche/454 Life Phantom T1b1b1b_KF163070_K 169, 190, 221+CCC, 234+T, 497, 587+C, 1599-1600d, 2536A, 7542, 7622, 8710, 9682C, 12468, 12469, 12525, 13201, 13260, 13300, T1b1b1b_KF163070_KF163091:221+CCC, 234+T, 1599-1600d, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: F163091 13310C, 14523T, 16022, 16050, 16056, 16113, 16200+A, 16255, 16316 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163092 Roche/454 Life Phantom T1b1_KF163092 169, 215+TCC, 234+T, 587+C, 1599-1600d, 2536A, 7542, 9501, 9682C, 13260, 13310C, 16022, 16050, 16084, 16085, 16113, 16200+A, T1b1_KF163092:215+TCC, 234+T, 1599-1600d, 16084, 16085, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163093 Roche/454 Life Phantom T1_KF163093 169, 215+TCC, 234+T, 299, 587+C, 1599-1600d, 2536A, 3682, 9201, 9682C, 12468, 12469, 13310C, 16050, 16113, 16200+A, 16247, T1_KF163093:215+TCC, 234+T, 1599-1600d, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16255, 16260 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

KF163094 Roche/454 Life Phantom T1b1b1a2_KF163089 169, 179, 215+TCC, 234+T, 587+C, 1481, 1599-1600d, 2536A, 3153Y, 7542, 9682C, 10460, 12468, 12469, 13201, 13310C, 14523T, T1b1b1a2_KF163089:215+TCC, 234+T, 1599-1600d, 3153, 16200+A Horsburgh,K.A., Prost,S.,

(Cattle and Sciences GS mutations: 16022, 16050, 16056, 16113, 16200+A, 16255 Gosling,A., Stanton,J.A., Rand,C.

Aurochs) Junior 215+TCC, 234+T, and Matisoo-Smith,E.A. PLoS

instrument 16200+A. ONE 8 (8), E71956 (2013)

Sequence Platform Potential Error Haplogroup_Most Variants Missing Diagnostic Private Sources

Matched Sequence Mutations

HQ439441 Illumina/Solex Phantom A1_HQ439441 358d, 2226+C, 5239+A, 5274+G, 6784, 8807, 15385+T, 15492, 15823, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, A1_HQ439441:358d, 2226+C, 5239+A, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2226+C, 5239+A, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5274+G, 15385+T. 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N HQ439442 Illumina/Solex Phantom M1 158, 356d, 427, 961, 1387A, 1609T, 2227+T, 2339A, 2788, 3070, 3100, 3475, 3800, 4062, 4526, 4536, 4599G, 4605, 4646, 4669, 4898, M1:356 M1:356d, 2227+T, 5239+A, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5103, 5239+A, 5277+A, 5527, 5827, 5884, 6004, 6076, 6307, 6712, 6784, 7001, 7432, 7666, 7900, 8005, 8043, 8076, 8150, 8175, 8238, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 8358, 8556T, 8565, 8798, 9086, 9332, 9540, 10110, 10173, 10214, 10292, 10376, 10448, 10460, 10646, 10859, 11240, 11394, 11492, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 11543, 11842, 11879, 11966, 12029, 12095, 12332, 12767, 13049, 13100, 13333, 13356, 13502, 13615, 13629, 13720, 13920, 13933, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, Biology. 328 (11), 1471-2148

15385+T. 14422, 14626, 14671, 14803, 14815, 15052A, 15133, 15342, 15385+T, 15492, 15599, 15614, 15656, 15717, 15768, 15803, 15824, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, (2011)

15866, 15953, 16065, 16077, 16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N,

16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N,

16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N,

16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N,

16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N,

16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N,

16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N,

16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N,

16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N,

16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N,

16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N,

16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N,

16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N,

16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N,

16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N,

16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16540A, 16543, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N,

16556, 16626 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439443 Illumina/Solex Phantom G1'2'3_HQ439443 158, 222, 356d, 382, 387, 416, 1387A, 2227+T, 2788, 2940, 3053, 3576, 4062, 4646, 4669, 4830, 5239+A, 5277+A, 5498, 5830, 5881, G1'2'3_HQ439443:356 G1'2'3_HQ439443:356d, 2227+T, 5239+A, 5277+A, 15385+T, 15868, 16100, 16126N, 16127N, 16128N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5884, 6004, 6307, 6688, 6784, 7001, 8005, 8037, 9239, 9402, 9669, 9741A, 10214, 10376, 10471, 11165, 11210, 11240, 11543, 11552, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 11842, 12767, 12860, 13049, 13175, 13223, 13333, 13502, 14158, 14626, 14734, 15385+T, 15492, 15539, 15594, 15599, 15632, 15647, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 15663, 15700, 15717, 15867, 15868, 16100, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, Biology. 328 (11), 1471-2148

15385+T. 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, (2011)

16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N,

16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N,

16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N,

16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N,

16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N,

16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N,

16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N,

16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N,

16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N,

16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N,

16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N,

16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N,

16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N,

16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N,

16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439444 Illumina/Solex Phantom P4a_HQ439444 158, 356d, 739, 860, 961, 1383, 1387A, 1684C, 2227+T, 2788, 3070, 3259T, 3271, 3557, 3616, 3800, 3942, 4062, 4536, 4605, 4646, P4a_HQ439444:356 P4a_HQ439444:356d, 2227+T, 5239+A, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4669, 5239+A, 5277+A, 5286, 5527, 5827, 5884, 6004, 6307, 6505, 6529, 6712, 6784, 7001, 7243, 7427, 7612T, 7666, 7898, 7900, 8005, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 8076, 8150, 8238, 8358, 8361, 8556T, 8565, 8855, 9053, 9086, 9239, 9775, 10110, 10173, 10214, 10292, 10376, 10448, 10859, 11240, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 11378, 11394, 11424, 11492, 11543, 11842, 11879, 11966, 12167, 12230, 12287, 12299, 12332, 12404, 12767, 13049, 13333, 13370, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15385+T. 13463, 13466, 13629, 13920, 13933, 14626, 14803, 15202, 15342, 15385+T, 15492, 15594, 15599, 15601, 15664, 15700, 15717, 15768, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

15774, 15806, 15953, 16035, 16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16540A, 16626 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N HQ439445 Illumina/Solex Phantom P4a_HQ439445 158, 172T, 356d, 739, 860, 961, 1383, 1387G, 1684C, 2226+C, 2788, 3070, 3259T, 3271, 3557, 3616, 3800, 3942, 4062, 4536, 4605, P4a_HQ439445:356 P4a_HQ439445:356d, 2226+C, 5239+A, 5277+A, 15382+C, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4646, 4669, 5239+A, 5277+A, 5527, 5827, 5884, 6004, 6307, 6505, 6529, 6712, 6784, 7001, 7243, 7427, 7612T, 7666, 7898, 7900, 8005, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 8076, 8150, 8238, 8358, 8361, 8556T, 8565, 8855, 9053, 9086, 9239, 9696, 9775, 10110, 10173, 10214, 10292, 10376, 10448, 10859, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 11240, 11378, 11394, 11424, 11492, 11543, 11842, 11879, 11966, 12167, 12230, 12287, 12332, 12404, 12767, 13049, 13333, 13370, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15382+C. 13463, 13466, 13629, 13920, 13933, 14193T, 14626, 14803, 14825, 15202, 15342, 15382+C, 15492, 15594, 15599, 15601, 15664, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

15700, 15717, 15768, 15774, 15806, 15953, 16035, 16054, 16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16368, 16398A, 16540A, 16626 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439446 Illumina/Solex Phantom L1a1a_HQ439446 158, 356d, 961, 1375, 1387A, 2227+T, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5239+A, 5277+A, 5527, 5815, 5884, 6004, L1a1a_HQ439446:356 L1a1a_HQ439446:356d, 2227+T, 5239+A, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8142A, 8301, 8319, 8358, 8565, 9239, 9684, 9951, 10110, 10214, 10292, 10376, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 10421, 10613, 11240, 11543, 11682, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13040, 13049, 13333, 13520, 14803, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 14995, 15313, 15385+T, 15491, 15492, 15493, 15531, 15599, 15600, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16100, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16626 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439447 Illumina/Solex Phantom P4a_HQ439447 158, 356d, 739, 860, 961, 1383, 1387G, 1684C, 2227+T, 2788, 3070, 3259T, 3271, 3557, 3616, 3800, 3942, 4062, 4536, 4605, 4646, P4a_HQ439447:356 P4a_HQ439447:356d, 2227+T, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4669, 5237+G, 5277+A, 5527, 5827, 5884, 6004, 6307, 6505, 6529, 6712, 6784, 7001, 7243, 7427, 7612T, 7666, 7898, 7900, 8005, 8076, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2227+T, 8150, 8238, 8358, 8361, 8556T, 8565, 8855, 9053, 9086, 9239, 9703, 9775, 10110, 10173, 10214, 10292, 10376, 10448, 10859, 11240, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5277+A, 11378, 11394, 11424, 11492, 11543, 11842, 11879, 11966, 12167, 12230, 12287, 12332, 12404, 12767, 13049, 13333, 13370, 13463, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15385+T. 13466, 13629, 13920, 13933, 14626, 14803, 15202, 15342, 15385+T, 15492, 15594, 15599, 15601, 15664, 15700, 15717, 15768, 15774, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

15806, 15953, 16035, 16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16540A, 16626 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N HQ439448 Illumina/Solex Phantom Q1b1_HQ439448 158, 302, 341, 356d, 739, 860, 961, 1387G, 2226+C, 2788, 3070, 3259T, 3271, 3616, 3800, 3942, 4062, 4201, 4536, 4605, 4646, 4669, Q1b1_HQ439448:356, 1387d Q1b1_HQ439448:356d, 1387G, 2226+C, 5239+A, 5274+G, 15383+G, 16118N, 16126N, 16127N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5239+A, 5274+G, 5527, 5827, 5884, 6004, 6307, 6529, 6688, 6712, 6784, 7001, 7243, 7294, 7576, 7612T, 7666, 7898, 7900, 8005, 8076, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 8150, 8238, 8358, 8361, 8556T, 8565, 8855, 9071, 9086, 9203, 9239, 9775, 10110, 10173, 10214, 10292, 10376, 10448, 10859, 11240, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5274+G, 11378, 11394, 11424, 11492, 11543, 11842, 11879, 11966, 12167, 12230, 12332, 12404, 12767, 13049, 13333, 13463, 13629, 13920, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, Biology. 328 (11), 1471-2148

15383+G. 13933, 14626, 14803, 15202, 15342, 15383+G, 15492, 15599, 15700, 15717, 15723, 15737, 15768, 15774, 15808, 15953, 16034, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, (2011)

16035, 16054, 16060C, 16118N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N,

16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N,

16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N,

16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N,

16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N,

16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N,

16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N,

16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N,

16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N,

16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N,

16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N,

16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N,

16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N,

16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N,

16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16540A, 16626 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N,

16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439449 Illumina/Solex Phantom C1a_HQ439449 158, 356d, 957, 1387G, 2226+C, 2238, 2788, 3800, 4062, 4599, 4884, 4993, 5239+A, 5277+A, 5500, 6076, 6784, 7001, 7942, 8723, C1a_HQ439449:356 C1a_HQ439449:356d, 2226+C, 5239+A, 5277+A, 15383+G, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 58d, 9239, 9278, 9664, 10214, 10217, 11046, 11129, 11240, 11543, 12352, 13079, 15383+G, 15492, 15599, 15647, 15717, 15823, 15867, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 15953, 15971, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15383+G. 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439450 Illumina/Solex Phantom Q2a_HQ439450 158, 302, 341, 356d, 739, 854, 860, 961, 1387A, 2227+T, 2788, 3070, 3259T, 3271, 3616, 3800, 3942, 4062, 4201, 4536, 4605, 4646, Q2a_HQ439450:356 Q2a_HQ439450:356d, 2227+T, 5237+G, 5274+G, 15385+T, 16124N, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4669, 5237+G, 5274+G, 5527, 5827, 5875, 5884, 6004, 6307, 6529, 6712, 6784, 7001, 7243, 7294, 7612T, 7666, 7898, 7900, 8005, 8076, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 8150, 8238, 8358, 8361, 8556T, 8565, 8855, 9086, 9203, 9239, 9775, 10110, 10173, 10214, 10292, 10376, 10448, 10859, 11240, 11378, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5274+G, 11394, 11424, 11492, 11543, 11842, 11879, 11966, 12167, 12230, 12332, 12404, 12767, 13049, 13333, 13463, 13629, 13920, 13933, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 14626, 14803, 15202, 15342, 15385+T, 15492, 15599, 15601, 15647, 15700, 15717, 15737, 15768, 15774, 15808, 15953, 15992, 16034, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16035, 16110, 16118, 16124N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16540A, 16626 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N HQ439451 Illumina/Solex Phantom L1a1a_HQ439451 158, 356d, 961, 1375, 1387A, 2227+T, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5239+A, 5274+G, 5527, 5815, 5884, 6004, L1a1a_HQ439451:356 L1a1a_HQ439451:356d, 2227+T, 5239+A, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 8319, 8358, 8565, 9239, 9684, 9951, 10110, 10214, 10292, 10376, 10421, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 10613, 11240, 11543, 11682, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13520, 14252, 14803, 14995, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5274+G, 15313, 15385+T, 15491, 15492, 15493, 15531, 15599, 15600, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16100, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16626 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439452 Illumina/Solex Phantom L2a2a_HQ439452 158, 356d, 961, 1375, 1387A, 1837, 2227+T, 2607, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5237+G, 5277+A, 5527, 5815, L2a2a_HQ439452:356 L2a2a_HQ439452:356d, 2227+T, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5884, 6004, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8199, 8301, 8319, 8358, 8403, 8565, 9239, 9951, 10110, 10214, 10292, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 10376, 10421, 10613, 11240, 11543, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13520, 14803, 14825, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5277+A, 14995, 15313, 15385+T, 15491, 15492, 15493, 15531, 15582, 15600, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16100, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16626 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439453 Illumina/Solex Phantom L3a2_HQ439453 77, 158, 356d, 961, 1375, 1387A, 2227+T, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5239+A, 5277+A, 5527, 5815, 5884, 6004, L3a2_HQ439453:356 L3a2_HQ439453:356d, 2227+T, 5239+A, 5277+A, 15383+A, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6307, 6784, 7001, 7516, 7666, 7840, 7900, 8005, 8058, 8301, 8319, 8358, 8565, 9239, 9398, 9951, 10110, 10214, 10292, 10376, 10421, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 10613, 11240, 11543, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13520, 14803, 14825, 14995, 15313, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 15383+A, 15491, 15492, 15493, 15531, 15599, 15600, 15601, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16100, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15383+A. 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16553, 16554, 16626, 16654-16657d 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N HQ439454 Illumina/Solex Phantom G1b_HQ439454 158, 222, 356d, 382, 387, 416, 1387A, 2226+C, 2788, 2940, 3053, 3576, 4062, 4646, 4669, 4830, 5237+G, 5277+A, 5498, 5669, 5830, G1b_HQ439454:356 G1b_HQ439454:356d, 2226+C, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5881, 5884, 6004, 6307, 6688, 6784, 7001, 7831, 8005, 8037, 9239, 9402, 9669, 9741A, 10214, 10376, 10471, 11165, 11240, 11453, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2226+C, 11543, 11552, 11842, 12767, 12860, 13049, 13223, 13333, 13502, 14350, 14476, 14626, 14734, 14825, 15385+T, 15492, 15539, 15582, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5277+A, 15594, 15599, 15632, 15647, 15663, 15700, 15717, 15867, 16028, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15385+T. 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16357N, 16368 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439455 Illumina/Solex Phantom M1a, M1a1 158, 356d, 427, 874, 961, 1387A, 1609T, 2227+T, 2339A, 2788, 3070, 3100, 3475, 3800, 4062, 4526, 4536, 4599G, 4605, 4646, 4669, M1a:356; M1a1:356 M1a:356d, 2227+T, 5237+G, 5274+G, 15385+T, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4898, 5103, 5237+G, 5274+G, 5527, 5827, 5884, 6004, 6076, 6307, 6712, 6784, 7001, 7432, 7666, 7900, 8005, 8043, 8076, 8150, 8175, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 8238, 8358, 8556T, 8565, 8798, 9086, 9332, 9540, 10110, 10173, 10214, 10292, 10376, 10448, 10460, 10646, 10859, 11240, 11394, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5274+G, 11492, 11543, 11842, 11879, 11966, 12029, 12095, 12332, 12767, 13049, 13100, 13333, 13356, 13502, 13615, 13629, 13720, 13920, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15385+T. 13933, 14422, 14626, 14671, 14803, 14815, 15052A, 15133, 15342, 15385+T, 15492, 15599, 15614, 15656, 15717, 15768, 15803, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

15824, 15866, 15953, 16065, 16077, 16110, 16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16540A, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16543, 16556, 16626 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N; M1a1:356d, 1387A, 2227+T, 5237+G,

5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N,

16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N,

16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N,

16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N,

16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N,

16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N,

16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N,

16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N,

16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N,

16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N,

16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N,

16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N,

16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N,

16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N,

16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N,

16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N,

16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N,

16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N,

16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N,

16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N,

16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N,

16355N, 16356N, 16357N HQ439456 Illumina/Solex Phantom L3a1_HQ439456 1d, 77, 158, 356d, 961, 1375, 1387G, 1891N, 1892N, 1893N, 1894N, 1895N, 1896N, 1897N, 1898N, 1899N, 1900N, 1901N, 1902N, L3a1_HQ439456:356 L3a1_HQ439456:1d, 356d, 1891N, 1892N, 1893N, 1894N, 1895N, 1896N, 1897N, 1898N, 1899N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 2226+C, 2788, 2899, 3517, 3557, 3942, 4062, 4536, 4646, 4669, 5241+T, 5277+A, 5527, 5815, 5884, 6004, 6307, 6784, 7001, 7516, 1900N, 1901N, 1902N, 2226+C, 3557, 5277+A, 13996N, 15385+T, 16117N, 16118N, 16119N, 16120N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 7666, 7900, 8005, 8058, 8301, 8319, 8358, 8565, 9239, 9951, 10110, 10214, 10292, 10376, 10421, 10613, 11084, 11240, 11543, 16121N, 16122N, 16123N, 16124N, 16125N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, Hofreiter,M. BMC Evolutionary horse) 5241+T, 5277+A, 11693, 11842, 11879, 12119, 12200, 12398, 12767, 12896, 12950, 13049, 13333, 13520, 13996N, 14803, 14995, 15313, 15385+T, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, Biology. 328 (11), 1471-2148

15385+T. 15491, 15492, 15493, 15531, 15582, 15599, 15600, 15601, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16100, 16108, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, (2011)

16117N, 16118N, 16119N, 16120N, 16121N, 16122N, 16123N, 16124N, 16125N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N,

16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N,

16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N,

16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N,

16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N,

16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N,

16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N,

16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N,

16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N,

16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N,

16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N,

16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N,

16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N,

16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N,

16357N, 16368, 16554, 16626 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N,

16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N,

16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439457 Illumina/Solex Phantom P_HQ439457 158, 356d, 739, 860, 961, 1383, 1387A, 1581N, 1582N, 1583N, 1584N, 1585N, 1586N, 1587N, 1588N, 1589N, 1590N, 1591N, 1592N, P_HQ439457:356, 3800, P_HQ439457:356d, 1581N, 1582N, 1583N, 1584N, 1585N, 1586N, 1587N, 1588N, 1589N, 1590N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 1593N, 1594N, 1595N, 1596N, 1597N, 1598N, 1599N, 1684C, 1876N, 1877N, 1878N, 1879N, 1880N, 1881N, 1882N, 1883N, 1884N, 4646, 4669, 10448, 16118, 1591N, 1592N, 1593N, 1594N, 1595N, 1596N, 1597N, 1598N, 1599N, 1876N, 1877N, 1878N, 1879N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 1885N, 1886N, 1887N, 1888N, 1889N, 1890N, 1891N, 1892N, 1893N, 1894N, 1895N, 1896N, 1897N, 2227+T, 2788, 2945N, 2946N, 16626 1880N, 1881N, 1882N, 1883N, 1884N, 1885N, 1886N, 1887N, 1888N, 1889N, 1890N, 1891N, 1892N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 2947N, 2948N, 2949N, 2950N, 2951N, 2952N, 2953N, 2954N, 2955N, 2956N, 2957N, 2958N, 2959N, 2960N, 2961N, 2962N, 3070, 1893N, 1894N, 1895N, 1896N, 1897N, 2227+T, 2945N, 2946N, 2947N, 2948N, 2949N, 2950N, 2951N, Biology. 328 (11), 1471-2148

15385+T. 3259T, 3271, 3557, 3616, 3800N, 3815N, 3816N, 3817N, 3818N, 3819N, 3820N, 3821N, 3822N, 3823N, 3942, 4062, 4536, 4605, 2952N, 2953N, 2954N, 2955N, 2956N, 2957N, 2958N, 2959N, 2960N, 2961N, 2962N, 3800N, 3815N, (2011)

4646N, 4669N, 5094N, 5098N, 5239+A, 5277+A, 5527, 5827, 5884, 6004, 6307, 6505, 6529, 6712, 6784, 7001, 7243, 7290N, 7291N, 3816N, 3817N, 3818N, 3819N, 3820N, 3821N, 3822N, 3823N, 4646N, 4669N, 5094N, 5098N, 5239+A,

7292N, 7293N, 7294N, 7295N, 7296N, 7427, 7612T, 7666, 7898, 7900, 8005, 8076, 8150, 8238, 8358, 8361, 8556T, 8565, 8855, 9053, 5277+A, 7290N, 7291N, 7292N, 7293N, 7294N, 7295N, 7296N, 10448N, 10826N, 10827N, 13685N,

9086, 9239, 9753, 9775, 10110, 10173, 10214, 10292, 10376, 10448N, 10826N, 10827N, 10859, 11045, 11240, 11378, 11394, 11424, 15385+T, 16118N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N,

11492, 11543, 11842, 11879, 11966, 12167, 12230, 12287, 12332, 12404, 12767, 13049, 13333, 13463, 13466, 13629, 13685N, 13747, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 13761, 13920, 13933, 14626, 14803, 15202, 15342, 15385+T, 15492, 15594, 15599, 15664, 15700, 15717, 15768, 15774, 15806, 15953, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N,

16035, 16118N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N,

16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N,

16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N,

16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N,

16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N,

16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N,

16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N,

16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N,

16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N,

16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N,

16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N,

16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N,

16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N,

16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N,

16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N,

16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16540A, 16626N, 16651-16657d 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N,

16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N,

16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N,

16355N, 16356N, 16357N, 16626N, 16651-16657d

HQ439458 Illumina/Solex Phantom B1a1_HQ439458 1-9d, 158, 356d, 859, 2227+T, 4062, 4440N, 5239+A, 5277+A, 5566N, 5567N, 6784, 7204, 7627, 9570, 9961, 10764, 11240, 11896, B1a1_HQ439458:356 B1a1_HQ439458:1-9d, 356d, 2227+T, 4440N, 5239+A, 5277+A, 5566N, 5567N, 13884N, 15383+A, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 11942, 11951, 13502, 13816, 13884N, 15383+A, 15492, 15582, 15647, 15663, 15717, 15807, 15823, 16052, 16110, 16126N, 16127N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2227+T, 5239+A, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, Hofreiter,M. BMC Evolutionary horse) 5277+A, 15383+A. 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, Biology. 328 (11), 1471-2148

16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, (2011)

16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N,

16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N,

16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N,

16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N,

16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N,

16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N,

16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N,

16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N,

16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N,

16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N,

16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N,

16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16653-16657d 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N,

16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N,

16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N,

16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N,

16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N,

16357N

HQ439459 Illumina/Solex Phantom L2a2_HQ439459 158, 356d, 961, 1375, 1387A, 1521, 2226+C, 2607, 2788, 2899, 3517, 3942, 4062N, 4536N, 4548N, 4549N, 4550N, 4551N, 4552N, L2a2_HQ439459:356, 4062, L2a2_HQ439459:356d, 2226+C, 4062N, 4536N, 4548N, 4549N, 4550N, 4551N, 4552N, 4553N, 4554N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4553N, 4554N, 4555N, 4556N, 4557N, 4558N, 4559N, 4560N, 4561N, 4562N, 4563N, 4564N, 4565N, 4566N, 4567N, 4646, 4669, 4536, 5527, 16368 4555N, 4556N, 4557N, 4558N, 4559N, 4560N, 4561N, 4562N, 4563N, 4564N, 4565N, 4566N, 4567N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2226+C, 5239+A, 5275N, 5277+A, 5527N, 5815, 5884, 5998, 6004, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8199, 8301, 8319, 8358, 5239+A, 5275N, 5277+A, 5527N, 5998, 8565, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 8403, 8565, 9239, 9716, 9951, 10110, 10214, 10292, 10376, 10421, 10613, 11240, 11543, 11693, 11842, 11879, 12119, 12200, 12767, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Biology. 328 (11), 1471-2148

15385+T. 12896, 12950, 13049, 13333, 13520, 14803, 14995, 15313, 15385+T, 15491, 15492, 15493, 15531, 15582, 15600, 15646, 15717, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, (2011)

15768, 15867, 15868, 15953, 15971, 16065, 16100, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N,

16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N,

16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16358N, 16359N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16360N, 16361N, 16362N, 16363N, 16364N, 16365N, 16366N, 16367N, 16368N, 16369N, 16370N, 16371N, 16372N, 16373N, 16626 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16358N, 16359N, 16360N, 16361N,

16362N, 16363N, 16364N, 16365N, 16366N, 16367N, 16368N, 16369N, 16370N, 16371N, 16372N,

16373N

HQ439460 Illumina/Solex Phantom B1c1_HQ439460 19N, 21N, 32N, 33N, 34N, 35N, 36N, 37N, 158, 356d, 669, 859, 1563N, 1564N, 1565N, 1566N, 1567N, 1568N, 1569N, 1580N, 2226+C, B1c1_HQ439460:356, 4062, B1c1_HQ439460:19N, 21N, 32N, 33N, 34N, 35N, 36N, 37N, 356d, 1563N, 1564N, 1565N, 1566N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4062N, 4743, 5239+A, 5277+A, 5929, 6784, 7176N, 7177N, 7178N, 7179N, 7180N, 7627, 9961, 10212N, 10213N, 10214N, 10215N, 16368 1567N, 1568N, 1569N, 1580N, 2226+C, 4062N, 5239+A, 5277+A, 7176N, 7177N, 7178N, 7179N, 7180N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2226+C, 5239+A, 10216N, 10217N, 10218N, 10219N, 10220N, 10221N, 10222N, 10223N, 10224N, 10225N, 10226N, 10227N, 10228N, 10229N, 10230N, 10212N, 10213N, 10214N, 10215N, 10216N, 10217N, 10218N, 10219N, 10220N, 10221N, 10222N, Hofreiter,M. BMC Evolutionary horse) 5277+A, 15383+G. 10231N, 10232N, 10233N, 10234N, 10235N, 10236N, 10237N, 10238N, 10239N, 10240N, 10241N, 10242N, 10243N, 10244N, 10245N, 10223N, 10224N, 10225N, 10226N, 10227N, 10228N, 10229N, 10230N, 10231N, 10232N, 10233N, Biology. 328 (11), 1471-2148

10246N, 10247N, 10248N, 10249N, 10250N, 10251N, 10252N, 10764, 11240, 12314, 12332, 14689, 15383+G, 15492, 15647, 15663, 10234N, 10235N, 10236N, 10237N, 10238N, 10239N, 10240N, 10241N, 10242N, 10243N, 10244N, (2011)

15717, 15823, 16052, 16108, 16110, 16124N, 16125N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 10245N, 10246N, 10247N, 10248N, 10249N, 10250N, 10251N, 10252N, 15383+G, 16124N, 16125N,

16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N,

16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N,

16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N,

16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N,

16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N,

16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N,

16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N,

16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N,

16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N,

16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N,

16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N,

16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N,

16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N,

16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16358N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N,

16359N, 16360N, 16361N, 16362N, 16363N, 16364N, 16365N, 16366N, 16367N, 16368N, 16369N, 16370N, 16371N, 16372N, 16373N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N,

16374N, 16375N, 16376N, 16377N, 16378N, 16379N, 16380N, 16381N, 16382N, 16383N, 16384N, 16385N, 16386N 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N,

16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N,

16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N,

16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N,

16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N,

16357N, 16358N, 16359N, 16360N, 16361N, 16362N, 16363N, 16364N, 16365N, 16366N, 16367N,

16368N, 16369N, 16370N, 16371N, 16372N, 16373N, 16374N, 16375N, 16376N, 16377N, 16378N,

16379N, 16380N, 16381N, 16382N, 16383N, 16384N, 16385N, 16386N HQ439461 Illumina/Solex Phantom L2b2 158, 356d, 961, 1375, 1387A, 2227+T, 2607, 2788, 2899, 3517, 3727, 3942, 4062, 4536, 4646, 4669, 5239+A, 5274+G, 5527, 5815, 5884, L2b2:356 L2b2:356d, 2227+T, 5239+A, 5274+G, 15385+T, 16108N, 16118N, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6004, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 8319, 8358, 8565, 9239, 9951, 10110, 10214, 10292, 10376, 10421, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 10613, 11240, 11543, 11693, 11842, 11879, 12119, 12200, 12494, 12767, 12896, 12950, 13049, 13333, 13520, 14803, 14995, 15313, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5274+G, 15385+T, 15491, 15492, 15493, 15531, 15582, 15600, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16100, 16108N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 16118N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16626 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439462 Illumina/Solex Phantom D, D1_JN398400, D2 1-28d, 158, 356d, 1387A, 1479N, 1694, 2217, 2227+T, 2788, 4062, 4609N, 4610N, 4611N, 4612N, 4613N, 4614N, 4615N, 4616N, D:356, 1387d, 4646, 5497, D:1-28d, 356d, 1387A, 1479N, 2227+T, 4609N, 4610N, 4611N, 4612N, 4613N, 4614N, 4615N, 4616N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4617N, 4618N, 4619N, 4646N, 5239+A, 5277+A, 5884, 6004, 6532, 6784, 6970N, 7001N, 7143N, 7144N, 7145N, 7146N, 7147N, 7148N, 7001, 11457, 12191, 13948, 4617N, 4618N, 4619N, 4646N, 5239+A, 5277+A, 6970N, 7001N, 7143N, 7144N, 7145N, 7146N, 7147N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 7149N, 7150N, 7151N, 7152N, 7153N, 7154N, 7155N, 7156N, 7157N, 7158N, 7159N, 7160N, 7161N, 7162N, 7163N, 7164N, 7165N, 14825, 15518, 15807, 16084, 7148N, 7149N, 7150N, 7151N, 7152N, 7153N, 7154N, 7155N, 7156N, 7157N, 7158N, 7159N, 7160N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 7166N, 7167N, 7168N, 7169N, 7170N, 7171N, 7172N, 7173N, 7174N, 7175N, 7176N, 7177N, 7178N, 7179N, 7180N, 7181N, 7666, 16108, 16110, 16368; 7161N, 7162N, 7163N, 7164N, 7165N, 7166N, 7167N, 7168N, 7169N, 7170N, 7171N, 7172N, 7173N, Biology. 328 (11), 1471-2148

15383+A. 7896, 8110, 8777N, 8867, 9239, 9384, 9402, 10214, 10376, 10398N, 10412N, 10413N, 10414N, 10415N, 10416N, 10429N, 10826N, D1_JN398400:356, 1387d, 7174N, 7175N, 7176N, 7177N, 7178N, 7179N, 7180N, 7181N, 7666, 7896, 8110, 8777N, 9384, 10398N, (2011)

10827N, 11240, 11417, 11543, 12139N, 12140N, 12141N, 12142N, 12143N, 12144N, 12145N, 12146N, 12147N, 12191N, 12218, 3557, 4646, 5497, 7001, 10412N, 10413N, 10414N, 10415N, 10416N, 10429N, 10826N, 10827N, 12139N, 12140N, 12141N,

12791, 13049, 13333, 13920N, 13948N, 14200, 14731, 15202, 15383+A, 15492, 15582, 15593, 15599, 15717, 15734, 15767, 15824, 11457, 12191, 13948, 15518, 12142N, 12143N, 12144N, 12145N, 12146N, 12147N, 12191N, 13920N, 13948N, 14731, 15202,

15867, 16004, 16108N, 16110N, 16115N, 16116N, 16117N, 16118N, 16119N, 16120N, 16121N, 16122N, 16123N, 16124N, 16125N, 15807, 16084, 16108, 16110, 15383+A, 15582, 15593, 15824, 16004, 16108N, 16110N, 16115N, 16116N, 16117N, 16118N, 16119N,

16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16368; D2:356, 1387d, 4646, 16120N, 16121N, 16122N, 16123N, 16124N, 16125N, 16126N, 16127N, 16128N, 16129N, 16130N,

16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 5497, 7001, 11457, 12191, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N,

16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 13948, 14825, 15518, 15807, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 15865, 16084, 16108, 16110, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N,

16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16368 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N,

16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368N, 16391, 16652-16657d 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368N, 16652-16657d;

D1_JN398400:1-28d, 356d, 1387A, 1479N, 2227+T, 4609N, 4610N, 4611N, 4612N, 4613N, 4614N,

4615N, 4616N, 4617N, 4618N, 4619N, 4646N, 5239+A, 5277+A, 6970N, 7001N, 7143N, 7144N, 7145N,

7146N, 7147N, 7148N, 7149N, 7150N, 7151N, 7152N, 7153N, 7154N, 7155N, 7156N, 7157N, 7158N,

7159N, 7160N, 7161N, 7162N, 7163N, 7164N, 7165N, 7166N, 7167N, 7168N, 7169N, 7170N, 7171N,

7172N, 7173N, 7174N, 7175N, 7176N, 7177N, 7178N, 7179N, 7180N, 7181N, 7666, 7896, 8110, 8777N,

9384, 10398N, 10412N, 10413N, 10414N, 10415N, 10416N, 10429N, 10826N, 10827N, 12139N,

12140N, 12141N, 12142N, 12143N, 12144N, 12145N, 12146N, 12147N, 12191N, 13920N, 13948N,

14731, 15202, 15383+A, 15582, 15593, 15824, 16004, 16108N, 16110N, 16115N, 16116N, 16117N,

16118N, 16119N, 16120N, 16121N, 16122N, 16123N, 16124N, 16125N, 16126N, 16127N, 16128N,

16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N,

16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N,

16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N,

16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N,

16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N,

16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N,

16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N,

16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N,

16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N,

16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N,

16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N,

16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N,

16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N,

16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N,

16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N,

16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N,

16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N,

16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N,

16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368N,

16652-16657d; D2:1-28d, 356d, 1387A, 1479N, 2227+T, 4609N, 4610N, 4611N, 4612N, 4613N, 4614N,

4615N, 4616N, 4617N, 4618N, 4619N, 4646N, 5239+A, 5277+A, 6970N, 7001N, 7143N, 7144N, 7145N,

7146N, 7147N, 7148N, 7149N, 7150N, 7151N, 7152N, 7153N, 7154N, 7155N, 7156N, 7157N, 7158N,

7159N, 7160N, 7161N, 7162N, 7163N, 7164N, 7165N, 7166N, 7167N, 7168N, 7169N, 7170N, 7171N,

7172N, 7173N, 7174N, 7175N, 7176N, 7177N, 7178N, 7179N, 7180N, 7181N, 7666, 7896, 8110, 8777N,

9384, 10398N, 10412N, 10413N, 10414N, 10415N, 10416N, 10429N, 10826N, 10827N, 12139N,

12140N, 12141N, 12142N, 12143N, 12144N, 12145N, 12146N, 12147N, 12191N, 13920N, 13948N,

14731, 15202, 15383+A, 15582, 15824, 16004, 16108N, 16110N, 16115N, 16116N, 16117N, 16118N,

16119N, 16120N, 16121N, 16122N, 16123N, 16124N, 16125N, 16126N, 16127N, 16128N, 16129N,

16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N,

16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N,

16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N,

16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N,

16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368N, 16652-16657d

HQ439463 Illumina/Solex Phantom I2a4_HQ439463 158, 356d, 1387A, 1587, 1791, 2227+T, 2614, 2770, 2788, 4062, 4063, 4392, 4646, 4669, 4830, 5061, 5210, 5239+A, 5277+A, 5884, I2a4_HQ439463:356 I2a4_HQ439463:356d, 2227+T, 5239+A, 5277+A, 15385+T, 15647, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6004, 6175, 6247, 6307, 6784, 7001, 8005, 8187, 8358, 8379, 8792, 9239, 9251, 9694, 9948, 10083, 10214, 10238, 10376, 11240, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 11543, 11827, 11842, 12404, 12443, 12683, 12767, 13049, 13333, 13502, 13761, 14554, 15385+T, 15492, 15535, 15593, 15599, 15647, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 15706, 15717, 15768, 15823, 15867, 15971, 16110, 16119, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16436 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439464 Illumina/Solex Phantom N1_HQ439464 158, 356d, 961, 1387G, 1609T, 2226+C, 2339A, 2788, 2802, 3070, 3100, 3475, 3557, 3800, 4062, 4526, 4536, 4605, 4646, 4669, 4898, N1_HQ439464:356 N1_HQ439464:356d, 2226+C, 5239+A, 5277+A, 15383+G, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4917, 5239+A, 5277+A, 5527, 5827, 5884, 6004, 6076, 6307, 6712, 6784, 7001, 7432, 7666, 7900, 8005, 8043, 8076, 8150, 8175, 8238, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 8280, 8358, 8556T, 8565, 8798, 9071, 9086, 9239, 9332, 9402, 9540, 10110, 10173, 10214, 10292, 10376, 10404, 10448, 10460, 10517, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 10646, 10859, 11240, 11394, 11492, 11543, 11842, 11879, 11966, 12029, 12095, 12332, 12767, 13049, 13100, 13309, 13333, 13356, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15383+G. 13502, 13567, 13615, 13629, 13720, 13920, 13933, 14422, 14626, 14671, 14803, 14815, 15052A, 15133, 15342, 15383+G, 15492, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

15541, 15598, 15599, 15717, 15768, 15803, 15824, 15835, 15866, 15953, 16004, 16065, 16110, 16118, 16126N, 16127N, 16128N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16540A, 16543, 16556, 16626 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439465 Illumina/Solex Phantom Q1b1a_HQ439465 158, 302, 341, 356d, 739, 860, 961, 1387G, 2227+T, 2788, 3070, 3259T, 3271, 3616, 3800, 3942, 4062, 4201, 4536, 4605, 4646, 4669, Q1b1a_HQ439465:356 Q1b1a_HQ439465:356d, 2227+T, 5239+A, 5277+A, 15385+T, 16110, 16126N, 16127N, 16128N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5239+A, 5277+A, 5527, 5827, 5884, 6004, 6307, 6529, 6688, 6712, 6784, 7001, 7243, 7294, 7612T, 7666, 7898, 7900, 8005, 8076, 8150, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2227+T, 8238, 8358, 8361, 8556T, 8565, 8855, 9086, 9203, 9239, 9775, 10110, 10173, 10214, 10292, 10376, 10448, 10859, 11240, 11378, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 11394, 11424, 11492, 11543, 11842, 11879, 11966, 12167, 12230, 12332, 12404, 12767, 13049, 13307, 13333, 13463, 13629, 13920, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, Biology. 328 (11), 1471-2148

15385+T. 13933, 14626, 14803, 15202, 15342, 15385+T, 15492, 15599, 15601, 15700, 15717, 15723, 15737, 15768, 15808, 15866, 15953, 16035, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, (2011)

16054, 16060C, 16110, 16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N,

16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N,

16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N,

16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N,

16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N,

16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N,

16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N,

16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N,

16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N,

16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N,

16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N,

16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N,

16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N,

16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16540A, 16626 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N,

16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439466 Illumina/Solex Phantom M1b_HQ439466 158, 356d, 427, 961, 1387A, 1609T, 2227+T, 2339A, 2788, 3070, 3100, 3211T, 3475, 3800, 4062, 4526, 4536, 4599G, 4646, 4669, 4898, M1b_HQ439466:356 M1b_HQ439466:356d, 1387A, 2227+T, 5239+A, 5274+G, 15383+G, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5103, 5239+A, 5274+G, 5527, 5827, 5884, 6004, 6076, 6307, 6712, 6784, 7001, 7432, 7666, 7900, 8005, 8043, 8076, 8150, 8175, 8238, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 8358, 8556T, 8565, 8798, 9086, 9332, 9540, 10110, 10173, 10214, 10292, 10376, 10448, 10460, 10515, 10646, 10859, 11240, 11394, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5274+G, 11492, 11513, 11543, 11789, 11842, 11879, 11966, 12029, 12095, 12332, 12767, 13049, 13100, 13333, 13356, 13502, 13615, 13629, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15383+G. 13720, 13920, 13933, 14422, 14626, 14671, 14803, 14815, 15052A, 15133, 15342, 15383+G, 15492, 15599, 15614, 15656, 15717, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

15768, 15803, 15824, 15866, 15953, 16065, 16077, 16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16540A, 16543, 16556, 16626 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439467 Illumina/Solex Phantom O_HQ439467 158, 356d, 739, 860, 961, 965, 1387A, 1684C, 2227+T, 2788, 3070, 3259T, 3271, 3557, 3616, 3800, 3942, 4062, 4536, 4605, 4646, 4669, O_HQ439467:356 O_HQ439467:356d, 2227+T, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5237+G, 5277+A, 5527, 5821, 5827, 5884, 6004, 6307, 6529, 6712, 6745, 6784, 7001, 7243, 7375, 7427, 7612T, 7666, 7898, 7900, 8005, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 8040, 8076, 8150, 8238, 8358, 8361, 8556T, 8565, 8855, 9053, 9086, 9239, 9775, 10110, 10173, 10214, 10292, 10361T, 10376, 10501, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5237+A, 5277+A, 10859, 11240, 11378, 11394, 11424, 11492, 11543, 11842, 11879, 11966, 12167, 12230, 12287, 12305, 12332, 12404, 12767, 12927, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15385+T. 13049, 13333, 13463, 13466, 13629, 13920, 13933, 13951, 14626, 14650, 14803, 15202, 15342, 15385+T, 15492, 15594, 15599, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

15632, 15664, 15700, 15717, 15768, 15774, 15806, 15953, 16035, 16110, 16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16357N, 16368, 16398A, 16540A, 16626 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439468 Illumina/Solex Phantom G1a_HQ439468 158, 222, 356d, 382, 387, 416, 1387G, 1603, 2226+C, 2788, 2940, 3053, 3576, 4062, 4646, 4669, 4830, 5237+G, 5277+A, 5498, 5669, G1a_HQ439468:356 G1a_HQ439468:356d, 2226+C, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5830, 5881, 5884, 6004, 6307, 6688, 6784, 7001, 8005, 8037, 8230, 9239, 9402, 9669, 9741A, 10214, 10376, 10471, 11165, 11240, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 11543, 11552, 11842, 12767, 12860, 13049, 13079, 13223, 13333, 13502, 14350, 14626, 14651, 14734, 15385+T, 15492, 15539, 15582, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5277+A, 15594, 15599, 15632, 15647, 15663, 15700, 15717, 15867, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15385+T. 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16368 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439469 Illumina/Solex Phantom B1a1_HQ439469 158, 356d, 859, 2227+T, 4062, 4245, 5237+G, 5277+A, 6784, 7627, 9961, 10764, 11240, 11399, 13166, 13816, 15385+T, 15492, 15582, B1a1_HQ439469:356 B1a1_HQ439469:356d, 2227+T, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 15647, 15663, 15717, 15807, 15823, 16052, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2227+T, 5237+G, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5277+A, 15385+T. 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439470 Illumina/Solex Phantom I2_HQ439470 158, 356d, 961, 1375, 1387G, 2227+T, 2607, 2788, 2899, 3517, 3727, 3942, 4062, 4536, 4646, 4669, 4757, 5239+A, 5277+A, 5527, 5815, I2_HQ439470:356 I2_HQ439470:356d, 2227+T, 5239+A, 5277+A, 15383+G, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5884, 6004, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 8319, 8358, 8565, 9239, 9951, 10087, 10110, 10214, 10292, 10376, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2227+T, 10421, 10613, 11240, 11543, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13520, 14803, 14995, 15313, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 15383+G, 15475, 15491, 15492, 15493, 15531, 15582, 15600, 15646, 15717, 15768, 15824, 15867, 15868, 15953, 15971, 16065, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15383+G. 16100, 16108, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16626 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439471 Illumina/Solex Phantom C1_HQ439471 158, 356d, 957, 1387G, 2226+C, 2238, 2788, 3800, 4062, 4599, 4884, 4993, 5237+G, 5277+A, 5500, 5914, 6076, 6784, 7001, 7942, C1_HQ439471:356, 1387A C1_HQ439471:356d, 1387G, 2226+C, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 9239, 9278, 9664, 10214, 10217, 11046, 11129, 11240, 11543, 12352, 13079, 15385+T, 15492, 15582, 15599, 15647, 15717, 15823, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 15867, 15953, 15971, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5277+A, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439472 Illumina/Solex Phantom G1a_HQ439472 158, 222, 356d, 382, 387, 416, 1387A, 2227+T, 2788, 2940, 3053, 3576, 4062, 4646, 4669, 4830, 5237+G, 5274+G, 5498, 5669, 5830, G1a_HQ439472:356 G1a_HQ439472:356d, 2227+T, 5237+G, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5881, 5884, 6004, 6307, 6688, 6784, 7001, 8005, 8037, 9239, 9402, 9669, 9741A, 10214, 10376, 10471, 11165, 11240, 11543, 11552, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 11842, 12767, 12860, 13049, 13223, 13333, 13502, 13812, 14350, 14626, 14651, 14734, 15297, 15385+T, 15492, 15539, 15582, 15599, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5274+G, 15632, 15647, 15663, 15717, 15867, 15971, 16028, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15385+T. 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439473 Illumina/Solex Phantom L3a2_HQ439473 77, 158, 356d, 961, 1375, 1387A, 2226+C, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5239+A, 5277+A, 5527, 5815, 5884, 6004, L3a2_HQ439473:356 L3a2_HQ439473:356d, 2226+C, 5239+A, 5277+A, 15381+A, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6307, 6784, 7001, 7202T, 7516, 7666, 7900, 8005, 8058, 8301, 8319, 8358, 8565, 9239, 9951, 10110, 10214, 10292, 10376, 10421, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2226+C, 10613, 11240, 11288, 11543, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13520, 14803, 14995, 15313, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 15381+A, 15491, 15492, 15493, 15531, 15582, 15599, 15600, 15601, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15381+A. 16100, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368N, 16554, 16626, 16651-16657d 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368N, 16651-16657d

HQ439474 Illumina/Solex Phantom B1c1_HQ439474 158, 356d, 859, 1896, 2226+C, 4062, 4743, 5239+A, 5277+A, 5929, 6784, 7627, 9961, 10764, 11240, 11375, 14689, 15385+T, 15492, B1c1_HQ439474:356 B1c1_HQ439474:356d, 2226+C, 5239+A, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 15647, 15663, 15717, 15823, 16052, 16108, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2226+C, 5239+A, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5277+A, 15385+T. 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439475 Illumina/Solex Phantom A1b_HQ439475 358d, 2226+C, 4520, 5237+G, 5274+G, 6784, 15385+T, 15492, 15823, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, A1b_HQ439475:358d, 2226+C, 5237+G, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2226+G, 5237+G, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5274+G, 15385+T. 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16357N 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439476 Illumina/Solex Phantom I1_HQ439476 158, 356d, 1387G, 1587, 1791, 2227+T, 2614, 2770, 2788, 4062, 4063, 4392, 4646, 4669, 4830, 5061, 5210, 5239+A, 5274+G, 5884, I1_HQ439476:356 I1_HQ439476:356d, 2227+T, 5239+A, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6004, 6175, 6247, 6307, 6784, 7001, 8005, 8358, 8379, 8792, 9239, 9948, 10083, 10214, 10238, 10376, 10699, 10793, 11240, 11543, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2227+T, 11827, 11842, 12443, 12683, 12767, 13049, 13333, 13466, 13502, 13761, 14038, 14554, 15385+T, 15492, 15535, 15582, 15594, 15599, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5274+G, 15647, 15706, 15717, 15768, 15823, 16110, 16119, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15385+T. 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439477 Illumina/Solex Phantom Q1b1a 158, 302, 341, 356d, 739, 860, 961, 1387G, 2227+T, 2788, 3070, 3259T, 3271, 3616, 3800, 3942, 4062, 4201, 4536, 4605, 4646, 4669, Q1b1a:356 Q1b1a:356d, 2227+T, 5239+A, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5239+A, 5274+G, 5527, 5827, 5884, 6004, 6307, 6529, 6688, 6712, 6784, 7001, 7243, 7294, 7612T, 7666, 7898, 7900, 8005, 8076, 8150, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2227+T, 8238, 8358, 8361, 8556T, 8565, 8855, 9086, 9203, 9239, 9775, 10110, 10173, 10214, 10292, 10376, 10448, 10859, 11240, 11378, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5274+G, 11394, 11424, 11492, 11543, 11842, 11879, 11966, 12167, 12230, 12332, 12404, 12767, 13049, 13307, 13333, 13463, 13629, 13920, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, Biology. 328 (11), 1471-2148

15385+T. 13933, 14626, 14803, 15202, 15342, 15385+T, 15492, 15599, 15601, 15700, 15717, 15723, 15737, 15768, 15808, 15953, 16035, 16054, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, (2011)

16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N,

16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N,

16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N,

16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N,

16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N,

16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N,

16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N,

16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N,

16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N,

16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N,

16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N,

16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N,

16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N,

16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16540A, 16626 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N,

16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439478 Illumina/Solex Phantom L4a_HQ439478 158, 356d, 961, 1375, 1387G, 1459, 2227+T, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5236+A, 5277+A, 5527, 5815, 5884, L4a_HQ439478:356 L4a_HQ439478:356d, 2227+T, 5236+A, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6004, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 8307, 8319, 8358, 8565, 9239, 9951, 10110, 10214, 10292, 10376, 10421, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2227+T, 10613, 11240, 11543, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13520, 14659, 14803, 14995, 15313, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5236+A, 5277+A, 15385+T, 15491, 15492, 15493, 15531, 15582, 15599, 15600, 15601, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16100, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15385+T. 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16626 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439479 Illumina/Solex Phantom G1a_HQ439479 1-14d, 158, 222, 356d, 382, 387, 416, 1387A, 2226+C, 2788, 2940, 3053, 3576, 4062, 4646, 4669, 4830, 5237+G, 5277+A, 5498, 5669, G1a_HQ439479:356 G1a_HQ439479:1-14d, 356d, 2226+C, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5830, 5881, 5884, 6004, 6307, 6688, 6784, 7001, 8005, 8037, 9218, 9239, 9402, 9669, 9741A, 10214, 10376, 10471, 11165, 11240, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2226+C, 11543, 11552, 11842, 12767, 12860, 13049, 13223, 13333, 13502, 14350, 14626, 14651, 14734, 15385+T, 15492, 15539, 15582, 15594, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5277+A, 15599, 15632, 15647, 15663, 15700, 15717, 15867, 16004, 16028, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16357N, 16368 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439480 Illumina/Solex Phantom I2b 158, 356d, 1387A, 1587, 1791, 2227+T, 2614, 2770, 2788, 4062, 4063, 4290, 4392, 4646, 4669, 4830, 5061, 5210, 5239+A, 5277+A, I2b:356 I2b:356d, 2227+T, 5239+A, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5884, 6004, 6175, 6247, 6307, 6784, 7001, 8005, 8074, 8358, 8379, 8792, 9239, 9694, 9948, 10083, 10214, 10238, 10376, 11240, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 11543, 11827, 11842, 12404, 12443, 12683, 12725, 12767, 13049, 13333, 13502, 13761, 14554, 15100, 15385+T, 15492, 15535, 15582, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 15599, 15647, 15706, 15717, 15768, 15823, 15867, 15971, 16110, 16119, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, Biology. 328 (11), 1471-2148

15385+T. 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, (2011)

16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N,

16357N, 16368 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N,

16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N,

16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439481 Illumina/Solex Phantom G1b_HQ439481 158, 222, 356d, 382, 387, 416, 1387G, 2226+C, 2788, 2940, 3053, 3513, 3576, 4062, 4646, 4669, 4830, 5239+A, 5277+A, 5498, 5669, G1b_HQ439481:356, 16368 G1b_HQ439481:356d, 2226+C, 5239+A, 5277+A, 15383+A, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5830, 5881, 5884, 6004, 6097, 6307, 6688, 6784, 7001, 8005, 8037, 9239, 9402, 9669, 9741A, 10214, 10376, 10471, 11165, 11240, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 11543, 11552, 11842, 12767, 12860, 13049, 13223, 13333, 13502, 14350, 14473, 14476, 14626, 14734, 14825, 15383+A, 15492, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 15539, 15582, 15594, 15599, 15632, 15647, 15663, 15700, 15717, 15867, 16028, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15383+A. 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16356N, 16357N, 16368N 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368N

HQ439482 Illumina/Solex Phantom L1a1a_HQ439482 158, 356d, 961, 1375, 1387A, 2226+C, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5239+A, 5277+A, 5527, 5815, 5884, 6004, L1a1a_HQ439482:356, 7001 L1a1a_HQ439482:356d, 2226+C, 5239+A, 5277+A, 6975N, 6976N, 6977N, 6978N, 6979N, 6980N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6307, 6784, 6975N, 6976N, 6977N, 6978N, 6979N, 6980N, 6981N, 7001N, 7516, 7666, 7900, 8005, 8058, 8301, 8319, 8358, 8565, 6981N, 7001N, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2226+C, 9239, 9684, 9951, 10110, 10214, 10292, 10376, 10421, 10613, 11240, 11543, 11682, 11693, 11842, 11879, 12119, 12200, 12767, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 12896, 12950, 13049, 13333, 13520, 14803, 14995, 15313, 15385+T, 15491, 15492, 15493, 15531, 15599, 15600, 15646, 15717, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, Biology. 328 (11), 1471-2148

15385+T. 15768, 15867, 15868, 15953, 15971, 16065, 16084, 16100, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, (2011)

16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N,

16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N,

16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N,

16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N,

16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N,

16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N,

16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N,

16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N,

16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N,

16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N,

16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N,

16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N,

16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N,

16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N,

16398A, 16626 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N,

16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N,

16354N, 16355N, 16356N, 16357N

HQ439483 Illumina/Solex Phantom L1a1a_HQ439483 158, 356d, 961, 1375, 1387A, 2226+C, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5237+G, 5277+A, 5527, 5815, 5884, 6004, L1a1a_HQ439483:356 L1a1a_HQ439483:356d, 2226+C, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

Przewalski's Analyzer II 1387A, 2226+C, 10613, 10956, 11240, 11543, 11682, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13520, 14803, 14995, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5277+A, 15313, 15385+T, 15491, 15492, 15493, 15531, 15599, 15600, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16091, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 16100, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16626 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439484 Illumina/Solex Phantom F 158, 356d, 382, 387, 416, 1387G, 2226+C, 2788, 2940, 3371, 3562, 3576, 4062, 4646, 4669, 4830, 5239+A, 5277+A, 5830, 5884, 6004, F:356, 1387d F:356d, 1387G, 2226+C, 5239+A, 5277+A, 15385+T, 16125N, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6307, 6784, 7001, 7504, 7746, 8005, 8037, 8789, 9239, 9669, 10214, 10376, 10471, 11165, 11240, 11543, 11820, 11842, 12767, 12860, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 13042, 13049, 13333, 13502, 14350, 14626, 14734, 15385+T, 15492, 15539, 15592, 15599, 15647, 15663, 15717, 15865, 15867, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 16125N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16361N, 16368, 16511 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16361N

HQ439485 Illumina/Solex Phantom M1a_HQ439485 158, 356d, 874, 961, 1387A, 1609T, 2226+A, 2339A, 2788, 3070, 3100, 3475, 3800, 4062N, 4494N, 4526N, 4536N, 4599G, 4605, 4646, M1a_HQ439485:356, 4062, M1a_HQ439485:356d, 1387A, 2226+A, 4062N, 4494N, 4526N, 4536N, 5239+A, 5277+A, 7001N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4669, 4898, 5103, 5239+A, 5277+A, 5527, 5827, 5884, 6004, 6076, 6307, 6712, 6784, 7001N, 7432, 7666, 7900, 8005, 8043, 8076, 4526, 4536, 7001, 16118, 14012N, 14013N, 14014N, 14015N, 14016N, 14017N, 14018N, 14019N, 14020N, 14021N, 14022N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2226+A, 8150, 8175, 8238, 8358, 8556T, 8565, 8798, 9002, 9086, 9332, 9540, 10110, 10173, 10214, 10292, 10376, 10448, 10460, 10646, 10859, 16368 14023N, 14024N, 14025N, 14026N, 14027N, 14028N, 14029N, 14030N, 14031N, 14032N, 14033N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5277+A, 11240, 11394, 11492, 11543, 11842, 11879, 11966, 12029, 12095, 12332, 12767, 13049, 13100, 13333, 13356, 13502, 13615, 13629, 14034N, 14035N, 14036N, 14037N, 14038N, 14039N, 14040N, 15385+T, 16114N, 16115N, 16116N, Biology. 328 (11), 1471-2148

15385+T. 13720, 13920, 13933, 14012N, 14013N, 14014N, 14015N, 14016N, 14017N, 14018N, 14019N, 14020N, 14021N, 14022N, 14023N, 16117N, 16118N, 16119N, 16120N, 16121N, 16122N, 16123N, 16124N, 16125N, 16126N, 16127N, (2011)

14024N, 14025N, 14026N, 14027N, 14028N, 14029N, 14030N, 14031N, 14032N, 14033N, 14034N, 14035N, 14036N, 14037N, 14038N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N,

14039N, 14040N, 14183, 14422, 14626, 14671, 14803, 14815, 15052A, 15133, 15342, 15385+T, 15492, 15599, 15614, 15656, 15717, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N,

15768, 15803, 15824, 15866, 15953, 16065, 16077, 16114N, 16115N, 16116N, 16117N, 16118N, 16119N, 16120N, 16121N, 16122N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N,

16123N, 16124N, 16125N, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N,

16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N,

16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N,

16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N,

16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N,

16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N,

16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N,

16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N,

16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N,

16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N,

16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N,

16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N,

16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N,

16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N,

16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N,

16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16358N, 16359N, 16360N, 16361N, 16362N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N,

16368N, 16540A, 16543, 16556, 16626, 16657d 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N,

16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16358N,

16359N, 16360N, 16361N, 16362N, 16368N, 16657d

HQ439486 Illumina/Solex Phantom B1c1, B1c_HQ439486 158, 356d, 859, 2226+C, 4062, 4743, 5237+G, 5274+G, 5929, 6784, 7627, 9961, 10764, 11240, 13741, 14689, 15385+T, 15492, 15647, B1c1:356; B1c1:356d, 2226+C, 5237+G, 5274+G, 13741, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d,, 15663, 15717, 15823, 16052, 16108, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, B1c_HQ439486:356 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2226+A, 5237+G, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5274+G, 15385+T. 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N; B1c_HQ439486:356d, 2226+C, 4743,

5237+G, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N,

16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N,

16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N,

16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N,

16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N,

16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N,

16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N,

16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N,

16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N,

16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N,

16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N,

16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N,

16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N,

16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N,

16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N,

16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N,

16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N,

16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N,

16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N,

16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N,

16354N, 16355N, 16356N, 16357N

HQ439487 Illumina/Solex Phantom C2a_HQ439487 158, 267, 356d, 957, 1387A, 2227+T, 2238, 2788, 3800, 4062, 4599, 4884, 4993, 5237+G, 5277+A, 5500, 6076, 6784, 7001, 7811, 7829, C2a_HQ439487:356 C2a_HQ439487:356d, 2227+T, 5237+G, 5277+A, 15383+G, 16126N, 16127N, 16128N, 16129N, 16130N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 7942, 8161, 9239, 9664, 10214, 10217, 11046, 11129, 11240, 11543, 12352, 12806, 13079, 15383+G, 15492, 15594, 15599, 15647, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 15717, 15823, 15867, 15876, 15953, 15971, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5277+A, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, Biology. 328 (11), 1471-2148

15383+G. 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, (2011)

16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N,

16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N,

16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N,

16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N,

16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N,

16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N,

16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N,

16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N,

16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N,

16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N,

16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N,

16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N,

16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N,

16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N,

16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N,

16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N,

16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439488 Illumina/Solex Phantom B1a1_HQ439488 1-3d, 158, 356d, 859, 2227+T, 4062, 4230, 5239+A, 5277+A, 6784, 7627, 9961, 10764, 11240, 13816, 15383+G, 15492, 15582, 15647, B1a1_HQ439488:356 B1a1_HQ439488:1-3d, 356d, 2227+T, 5239+A, 5277+A, 15383+G, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 15663, 15717, 15807, 15823, 16052, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2227+T, 5239+A, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5277+A, 15383+G. 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439489 Illumina/Solex Phantom D1a_HQ439489 158, 356d, 1387G, 1694, 2217, 2227+T, 2788, 3557, 4062, 4646, 5239+A, 5274+G, 5497, 5884, 6004, 6532, 6784, 7001, 8867, 9239, D1a_HQ439489:356, 1387d D1a_HQ439489:356d, 1387G, 2227+T, 5239+A, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 9402, 10214, 10376, 11240, 11417, 11457, 11543, 12191, 12218, 12791, 13049, 13333, 13589, 13948, 14200, 15385+T, 15492, 15518, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2227+T, 15599, 15717, 15734, 15767, 15807, 15867, 15981, 16084, 16108, 16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5274+G, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16357N, 16368, 16391 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439490 Illumina/Solex Phantom H_HQ439490 158, 356d, 1387A, 1546N, 1551N, 1552N, 1553N, 1554N, 1668, 1735N, 1736N, 1737N, 1738N, 1739N, 1740N, 1741N, 1742N, 1743N, H_HQ439490:356, 1387d, H_HQ439490:356d, 1387A, 1546N, 1551N, 1552N, 1553N, 1554N, 1735N, 1736N, 1737N, 1738N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 1744N, 1745N, 1746N, 1747N, 1748N, 1749N, 1750N, 1751N, 1752N, 1753N, 1754N, 1755N, 1756N, 1757N, 1758N, 1759N, 2226+C, 1546 1739N, 1740N, 1741N, 1742N, 1743N, 1744N, 1745N, 1746N, 1747N, 1748N, 1749N, 1750N, 1751N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2226+C, 2788, 3064, 4062, 4182, 4646, 4669, 4830, 5237+G, 5272, 5277+A, 5884, 6004, 6076, 6127, 6307, 6565, 6784, 6835, 7001, 7093, 7111, 1752N, 1753N, 1754N, 1755N, 1756N, 1757N, 1758N, 1759N, 2226+C, 5237+G, 5277+A, 15385+T, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5277+A, 7258, 8005, 8481, 8741, 8763, 8776, 9209, 9239, 9856, 10083, 10214, 10376, 10914, 11240, 11543, 11842, 12767, 13049, 13333, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, Biology. 328 (11), 1471-2148

15385+T. 13502, 13761, 14335, 15004, 15385+T, 15492, 15523, 15537, 15582, 15599, 15646, 15715, 15717, 15768, 15867, 15971, 16078, 16108, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, (2011)

16110, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N,

16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N,

16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N,

16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N,

16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N,

16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N,

16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N,

16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N,

16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N,

16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N,

16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N,

16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N,

16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N,

16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N,

16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16657d 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N,

16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N,

16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N,

16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N,

16357N HQ439491 Illumina/Solex Phantom A1a 358d, 2226+C, 3557, 5239+A, 5277+A, 6784, 12653, 15385+T, 15629, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, A1a:358d, 2226+C, 3557, 5239+A, 5277+A, 6784, 12653, 15385+T, 15629, 16126N, 16127N, 16128N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d,, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2227+T, 5239+A, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, Hofreiter,M. BMC Evolutionary horse) 5277+A, 15385+T. 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, Biology. 328 (11), 1471-2148

16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, (2011)

16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N,

16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N,

16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N,

16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N,

16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N,

16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N,

16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N,

16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N,

16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N,

16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N,

16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N,

16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N,

16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N,

16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N,

16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N,

16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439492 Illumina/Solex Phantom L2a2a_HQ439492 158, 356d, 961, 1375, 1387G, 2226+C, 2607, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5239+A, 5274+G, 5527, 5815, 5884, L2a2a_HQ439492:356 L2a2a_HQ439492:356d, 2226+C, 5239+A, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6004, 6307, 6619, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8199, 8301, 8319, 8358, 8403, 8565, 9239, 9951, 10110, 10214, 10292, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387G, 2226+C, 10376, 10421, 10613, 11240, 11543, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13520, 14803, 14825, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5274+G, 14995, 15313, 15385+T, 15491, 15492, 15493, 15531, 15582, 15600, 15601, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16626, 16649 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439493 Illumina/Solex Phantom L2a2_HQ439493 158, 180, 356d, 961, 1375, 1387A, 2226+C, 2607, 2788, 2899, 3517, 3942, 4062, 4536, 4646, 4669, 5237+G, 5274+G, 5527, 5815, 5884, L2a2_HQ439493:356 L2a2_HQ439493:356d, 2226+C, 5237+G, 5274+G, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 6004, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8199, 8301, 8319, 8358, 8403, 8565, 9239, 9951, 10110, 10214, 10292, 10376, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2226+C, 10421, 10613, 11240, 11543, 11693, 11842, 11879, 12119, 12200, 12767, 12896, 12950, 13049, 13333, 13520, 14803, 14995, 15313, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5237+G, 5274+G, 15385+T, 15491, 15492, 15493, 15531, 15600, 15646, 15717, 15768, 15867, 15868, 15953, 15971, 16065, 16100, 16126N, 16127N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16626, 16657d 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N HQ439494 Illumina/Solex Phantom L1a1a_HQ439494 158, 356d, 961, 1375, 2227+T, 2607, 2788, 2899, 3517, 3942, 4062, 4536, 4646N, 4669, 5237+G, 5277+A, 5500, 5527, 5815, 5884, L1a1a_HQ439494:356, 4646 L1a1a_HQ439494:356d, 2227+T, 4646N, 5237+G, 5277+A, 15385+T, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 5932, 6004, 6307, 6784, 7001, 7516, 7666, 7900, 8005, 8058, 8301, 8319, 8358, 8403, 8481, 8565, 9239, 9951, 10110, 10214, 10292, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 2227+T, 5237+G, 10376, 10421, 10613, 11240, 11543, 11693, 11842, 11879, 12119, 12200, 12671, 12767, 12896, 12950, 13049, 13333, 13520, 13785, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5277+A, 15385+T. 14029, 14803, 14995, 15313, 15385+T, 15491, 15492, 15493, 15531, 15582, 15600, 15646, 15682, 15717, 15768, 15867, 15868, 15953, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15971, 16100, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N,

16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16368, 16398A, 16626 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N

HQ439495 Illumina/Solex Phantom M1b, M1b_HQ439495 158, 356d, 427, 961, 1387A, 1609T, 2227+T, 2339A, 2788, 3070, 3100, 3211T, 3475, 3800, 4062, 4526, 4536, 4599G, 4605, 4646, 4669, M1b:356; M1b:356d, 2227+T, 5239+A, 5274+G, 11803, 15385+T, 15582, 16126N, 16127N, 16128N, 16129N, Lippold,S., Matzke,N.,

(Horse and a Genome mutaions: 358d, 4898, 5103, 5239+A, 5274+G, 5527, 5827, 5884, 6004, 6076, 6307, 6712, 6784, 7001, 7432, 7666, 7900, 8005, 8043, 8076, 8150, 8175, M1b_HQ439495:356 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, Reissman,M., Burbano,H. and

Przewalski's Analyzer II 1387A, 2227+T, 8238, 8358, 8556T, 8565, 8798, 9086, 9332, 9540, 10110, 10173, 10214, 10292, 10376, 10448, 10460, 10515, 10646, 10859, 11240, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N, 16151N, Hofreiter,M. BMC Evolutionary horse) 5239+A, 5274+G, 11394, 11492, 11513, 11543, 11803, 11842, 11879, 11966, 12029, 12095, 12332, 12767, 13049, 13100, 13333, 13356, 13502, 13615, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16162N, Biology. 328 (11), 1471-2148

15385+T. 13629, 13720, 13920, 13933, 14422, 14626, 14671, 14803, 14815, 15052A, 15133, 15342, 15385+T, 15492, 15582, 15599, 15614, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, (2011)

15656, 15717, 15768, 15803, 15824, 15866, 15953, 16065, 16077, 16118, 16126N, 16127N, 16128N, 16129N, 16130N, 16131N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N,

16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N, 16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N, 16195N,

16147N, 16148N, 16149N, 16150N, 16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N,

16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N, 16173N, 16174N, 16175N, 16176N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N,

16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N, 16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16218N, 16219N, 16220N, 16221N, 16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N,

16192N, 16193N, 16194N, 16195N, 16196N, 16197N, 16198N, 16199N, 16200N, 16201N, 16202N, 16203N, 16204N, 16205N, 16206N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16237N, 16238N, 16239N, 16207N, 16208N, 16209N, 16210N, 16211N, 16212N, 16213N, 16214N, 16215N, 16216N, 16217N, 16218N, 16219N, 16220N, 16221N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N,

16222N, 16223N, 16224N, 16225N, 16226N, 16227N, 16228N, 16229N, 16230N, 16231N, 16232N, 16233N, 16234N, 16235N, 16236N, 16251N, 16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N,

16237N, 16238N, 16239N, 16240N, 16241N, 16242N, 16243N, 16244N, 16245N, 16246N, 16247N, 16248N, 16249N, 16250N, 16251N, 16262N, 16263N, 16264N, 16265N, 16266N, 16267N, 16268N, 16269N, 16270N, 16271N, 16272N,

16252N, 16253N, 16254N, 16255N, 16256N, 16257N, 16258N, 16259N, 16260N, 16261N, 16262N, 16263N, 16264N, 16265N, 16266N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16282N, 16283N,

16267N, 16268N, 16269N, 16270N, 16271N, 16272N, 16273N, 16274N, 16275N, 16276N, 16277N, 16278N, 16279N, 16280N, 16281N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N,

16282N, 16283N, 16284N, 16285N, 16286N, 16287N, 16288N, 16289N, 16290N, 16291N, 16292N, 16293N, 16294N, 16295N, 16296N, 16295N, 16296N, 16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N,

16297N, 16298N, 16299N, 16300N, 16301N, 16302N, 16303N, 16304N, 16305N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16306N, 16307N, 16308N, 16309N, 16310N, 16311N, 16312N, 16313N, 16314N, 16315N, 16316N,

16312N, 16313N, 16314N, 16315N, 16316N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16317N, 16318N, 16319N, 16320N, 16321N, 16322N, 16323N, 16324N, 16325N, 16326N, 16327N,

16327N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N, 16339N, 16340N, 16341N, 16328N, 16329N, 16330N, 16331N, 16332N, 16333N, 16334N, 16335N, 16336N, 16337N, 16338N,

16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N, 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16339N, 16340N, 16341N, 16342N, 16343N, 16344N, 16345N, 16346N, 16347N, 16348N, 16349N,

16357N, 16368, 16540A, 16543, 16556, 16626, 16653N 16350N, 16351N, 16352N, 16353N, 16354N, 16355N, 16356N, 16357N, 16653N;

M1b_HQ439495:356d, 1387A, 2227+T, 5239+A, 5274+G, 10646, 15385+T, 16126N, 16127N, 16128N,

16129N, 16130N, 16131N, 16132N, 16133N, 16134N, 16135N, 16136N, 16137N, 16138N, 16139N,

16140N, 16141N, 16142N, 16143N, 16144N, 16145N, 16146N, 16147N, 16148N, 16149N, 16150N,

16151N, 16152N, 16153N, 16154N, 16155N, 16156N, 16157N, 16158N, 16159N, 16160N, 16161N,

16162N, 16163N, 16164N, 16165N, 16166N, 16167N, 16168N, 16169N, 16170N, 16171N, 16172N,

16173N, 16174N, 16175N, 16176N, 16177N, 16178N, 16179N, 16180N, 16181N, 16182N, 16183N,

16184N, 16185N, 16186N, 16187N, 16188N, 16189N, 16190N, 16191N, 16192N, 16193N, 16194N,