Numerical Taxonomy of Certain Coryneform Bacteria
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Growth and Adaptation of Microorganisms on the Cheese Surface Christophe Monnet, Sophie Landaud-Liautaud, Pascal Bonnarme, Dominique Swennen
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Archive Ouverte en Sciences de l'Information et de la Communication Growth and adaptation of microorganisms on the cheese surface Christophe Monnet, Sophie Landaud-Liautaud, Pascal Bonnarme, Dominique Swennen To cite this version: Christophe Monnet, Sophie Landaud-Liautaud, Pascal Bonnarme, Dominique Swennen. Growth and adaptation of microorganisms on the cheese surface. FEMS Microbiology Letters, Wiley-Blackwell, 2015, 362 (1), pp.1-9. 10.1093/femsle/fnu025. hal-01535275 HAL Id: hal-01535275 https://hal.archives-ouvertes.fr/hal-01535275 Submitted on 28 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 Growth and adaptation of microorganisms on the cheese surface 2 3 4 Christophe Monnet1,2, Sophie Landaud2,1, Pascal Bonnarme1,2 & Dominique Swennen3,4 5 6 1 INRA, UMR782 Génie et Microbiologie des Procédés Alimentaires, 78370 Thiverval- 7 Grignon, France 8 2 AgroParisTech, UMR782 Génie et Microbiologie des Procédés Alimentaires, 78370 9 Thiverval-Grignon, France 10 3 INRA, UMR1319 Micalis, 78370 Thiverval-Grignon, France 11 4 AgroParisTech, UMR1319 Micalis, 78370 Thiverval-Grignon, France 12 13 * Corresponding author. -
Ameliorating Process Parameters for Zeaxanthin Yield in Arthrobacter Gandavensis MTCC 25325
Ram et al. AMB Expr (2020) 10:69 https://doi.org/10.1186/s13568-020-01008-4 ORIGINAL ARTICLE Open Access Ameliorating process parameters for zeaxanthin yield in Arthrobacter gandavensis MTCC 25325 Shristi Ram1,2, Sushma Rani Tirkey1,2, Madhava Anil Kumar1,3 and Sandhya Mishra1,2* Abstract The present study aims to escalate the production of prophylactic agent zeaxanthin using a screened potential bacterial isolate. For this purpose, a freshwater bacterium capable of producing zeaxanthin was isolated from Bor Talav, Bhavnagar. The 16S rRNA sequence confrmed the isolate as Arthrobacter gandavensis. The bacterium was also submitted to Microbial Type Culture Collection, CSIR-Institute of Microbial Technology, Chandigarh, India, with the accession number MTCC 25325. The chemo-metric tools were employed to optimise the infuencing factors such as pH, temperature, inoculum size, agitation speed, carbon source and harvest time on zeaxanthin yield. Thereafter, six parameters were narrowed down to three factors and were optimised using the central composite design (CCD) matrix. Maximum zeaxanthin (1.51 mg/g) was derived when A. gandavensis MTCC 25325 was grown under pH 6.0, 1.5% (w/v) glucose and 10% (v/v) inoculum size. A high regression coefcient (R2 0.92) of the developed model indicated the accurateness of the tested parameters. To the best of our knowledge,= this is the frst report on tailoring the process parameters using chemo-metric optimisation for escalating the zeaxanthin production by A. gandavensis MTCC 25325. Keywords: Arthrobacter gandavensis MTCC 25325, Central composite design, Nutraceutical, Zeaxanthin Key points Introduction Te pursuit of alternative sources as functional food (that • Chemo-metric approach was used for optimising serves the dual purpose of nutrition and diet) has led to zeaxanthin production. -
Pigments Produced by the Bacteria Belonging to the Genus Arthrobacter Nuthathai Sutthiwong, Yanis Caro, Mireille Fouillaud, Philippe Laurent, A
Pigments produced by the bacteria belonging to the genus Arthrobacter Nuthathai Sutthiwong, Yanis Caro, Mireille Fouillaud, Philippe Laurent, A. Valla, Laurent Dufossé To cite this version: Nuthathai Sutthiwong, Yanis Caro, Mireille Fouillaud, Philippe Laurent, A. Valla, et al.. Pigments produced by the bacteria belonging to the genus Arthrobacter. 7th International Congress of Pigments in Food – New technologies towards health, through colors, Jun 2013, Novara, Italy. 2016. hal- 01397507 HAL Id: hal-01397507 https://hal.archives-ouvertes.fr/hal-01397507 Submitted on 16 Nov 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Public Domain Pigments produced by the bacteria belonging to the genus Arthrobacter Sutthiwong N.1, 2, Caro Y.2, Fouillaud M.2, Laurent P.3, Valla A.4, Dufossé L.2,5 1 Agricultural Technology Department, Thailand Institute of Scientific and Technological Research, Pathum Thani, Thailand 2 Laboratoire de Chimie des Substances Naturelles et des Sciences des Aliments, Université de La Réunion, ESIROI Agroalimentaire,Sainte-Clotilde, -
Draft Genome Sequence of Arthrobacter Sp. Strain UCD-GKA (Phylum Actinobacteria)
PROKARYOTES crossm Downloaded from Draft Genome Sequence of Arthrobacter sp. Strain UCD-GKA (Phylum Actinobacteria) Gregory N. Kincheloe,a Jonathan A. Eisen,a,b David A. Coila http://genomea.asm.org/ University of California, Davis Genome Center, Davis, California, USAa; Department of Evolution and Ecology and Department of Medical Microbiology and Immunology, University of California Davis, Davis, California, USAb ABSTRACT Here we present the draft genome of Arthrobacter sp. strain UCD-GKA. The assembly contains 4,930,274 bp in 33 contigs. This strain was isolated from the Received 29 November 2016 Accepted 1 December 2016 Published 9 February 2017 handle of a weight bar in the UC Davis Activities and Recreation Center. Citation Kincheloe GN, Eisen JA, Coil DA. 2017. Draft genome sequence of Arthrobacter sp. strain UCD-GKA (phylum Actinobacteria). embers of the genus Arthrobacter are aerobic, Gram-positive bacteria (1) primarily Genome Announc 5:e01599-16. https:// doi.org/10.1128/genomeA.01599-16. Mknown for switching between the bacilli and cocci shapes depending on the on February 28, 2017 by UNIVERSITY OF CALIFORNIA-DAVIS environmental conditions (2). They are commonly found in soil. Copyright © 2017 Kincheloe et al. This is an open-access article distributed under the terms Arthrobacter sp. strain UCD-GKA was isolated from a squatting bar located in the of the Creative Commons Attribution 4.0 weight room of the UC Davis Activities and Recreation Center. This was part of an International license. undergraduate research project to provide microbial reference genomes of bacteria Address correspondence to Jonathan A. Eisen, isolated from the built environment (http://www.microbe.net). -
Exploring the Diversity and Antimicrobial Potential of Marine Actinobacteria from the Comau Fjord in Northern Patagonia, Chile
ORIGINAL RESEARCH published: 19 July 2016 doi: 10.3389/fmicb.2016.01135 Exploring the Diversity and Antimicrobial Potential of Marine Actinobacteria from the Comau Fjord in Northern Patagonia, Chile Agustina Undabarrena 1, Fabrizio Beltrametti 2, Fernanda P. Claverías 1, Myriam González 1, Edward R. B. Moore 3, 4, Michael Seeger 1 and Beatriz Cámara 1* 1 Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química & Centro de Biotecnología Daniel Alkalay Lowitt, Universidad Técnica Federico Santa María, Valparaíso, Chile, 2 Actygea S.r.l., Gerenzano, Italy, 3 Culture Collection University of Gothenburg (CCUG), Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden, 4 Department of Infectious Diseases, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden Edited by: Bioprospecting natural products in marine bacteria from fjord environments are attractive Learn-Han Lee, due to their unique geographical features. Although, Actinobacteria are well known Monash University Malaysia Campus, Malaysia for producing a myriad of bioactive compounds, investigations regarding fjord-derived Reviewed by: marine Actinobacteria are scarce. In this study, the diversity and biotechnological Atte Von Wright, potential of Actinobacteria isolated from marine sediments within the Comau University of Eastern Finland, Finland fjord, in Northern Chilean Patagonia, were assessed by culture-based approaches. Polpass Arul Jose, Central Salt and Marine Chemicals The 16S rRNA gene sequences revealed that members phylogenetically related Research Institute, India to the Micrococcaceae, Dermabacteraceae, Brevibacteriaceae, Corynebacteriaceae, *Correspondence: Microbacteriaceae, Dietziaceae, Nocardiaceae, and Streptomycetaceae families were Beatriz Cámara [email protected] present at the Comau fjord. A high diversity of cultivable Actinobacteria (10 genera) was retrieved by using only five different isolation media. -
Enterobacter Massiliensis Sp. Nov
Standards in Genomic Sciences (2013) 7:399-412 DOI:10.4056/sigs.3396830 Non contiguous-finished genome sequence and descrip- tion of Enterobacter massiliensis sp. nov. Jean-Christophe Lagier1, Khalid El Karkouri1, Ajay Kumar Mishra1, Catherine Robert1, Didier Raoult1 and Pierre-Edouard Fournier1* 1Aix-Marseille Université, Faculté de médecine, Marseille, France *Corresponding author: Pierre-Edouard Fournier ([email protected]) Keywords: Enterobacter massiliensis, genome Enterobacter massiliensis strain JC163T sp. nov. is the type strain of E. massiliensis sp. nov., a new species within the genus Enterobacter. This strain, whose genome is described here, was isolated from the fecal flora of a healthy Senegalese patient. E. massiliensis is an aerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,922,247 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 55.1% and contains 4,644 protein-coding and 80 RNA genes, including 5 rRNA genes. Introduction Enterobacter massiliensis strain JC163T (= CSUR Enterobacter spp. were isolated from the normal P161 = DSM 26120) is the type strain of E. fecal flora. massiliensis sp. nov. This bacterium is a Gram- negative, aerobic, flagellate, indole-positive bacil- Classification and features lus that was isolated from the feces of a healthy A stool sample was collected from a healthy 16- Senegalese patient in a study aiming at cultivating year-old male Senegalese volunteer patient living all bacterial species in human feces [1]. The cur- in Dielmo (rural village in the Guinean-Sudanian rent classification of prokaryotes, known as zone in Senegal), who was included in a research polyphasic taxonomy, relies on a combination of protocol. -
Description of Gabonibacter Massiliensis Gen. Nov., Sp. Nov., a New Member of the Family Porphyromonadaceae Isolated from the Human Gut Microbiota
Curr Microbiol DOI 10.1007/s00284-016-1137-2 Description of Gabonibacter massiliensis gen. nov., sp. nov., a New Member of the Family Porphyromonadaceae Isolated from the Human Gut Microbiota 1,2 1 3,4 Gae¨l Mourembou • Jaishriram Rathored • Jean Bernard Lekana-Douki • 5 1 1 Ange´lique Ndjoyi-Mbiguino • Saber Khelaifia • Catherine Robert • 1 1,6 1 Nicholas Armstrong • Didier Raoult • Pierre-Edouard Fournier Received: 9 June 2016 / Accepted: 8 September 2016 Ó Springer Science+Business Media New York 2016 Abstract The identification of human-associated bacteria Gabonibacter gen. nov. and the new species G. mas- is very important to control infectious diseases. In recent siliensis gen. nov., sp. nov. years, we diversified culture conditions in a strategy named culturomics, and isolated more than 100 new bacterial Keywords Gabonibacter massiliensis Á Taxonogenomics Á species and/or genera. Using this strategy, strain GM7, a Culturomics Á Gabon Á Gut microbiota strictly anaerobic gram-negative bacterium was recently isolated from a stool specimen of a healthy Gabonese Abbreviations patient. It is a motile coccobacillus without catalase and CSUR Collection de Souches de l’Unite´ des oxidase activities. The genome of Gabonibacter mas- Rickettsies siliensis is 3,397,022 bp long with 2880 ORFs and a G?C DSM Deutsche Sammlung von content of 42.09 %. Of the predicted genes, 2,819 are Mikroorganismen protein-coding genes, and 61 are RNAs. Strain GM7 differs MALDI-TOF Matrix-assisted laser desorption/ from the closest genera within the family Porphyromon- MS ionization time-of-flight mass adaceae both genotypically and in shape and motility. -
Diapositive 1
29.04.2013 ESCMID-BERLIN «Culturomics» © by author ESCMID Online Lecture Library Didier Raoult Marseille - France [email protected] www.mediterranee-infection.com As samples in 2012 We received -220,000 samples for culture (bactéria, fungi, viruses) - 200,000 PCR were performed - 115,000 serological testing were tested © by author Real-time laboratory surveillance of sexually-transmissible infections in Marseille University hospitals reveals rise of gonorrhea, syphilis and HIV seroconversions in 2012. PhilippeESCMID Colson1,2 , Frédérique Online Gouriet1,2 Lecture , Sékéné Badiaga 2,3Library, Catherine Tamalet 1,2, Andreas Stein2,4, Didier Raoult1,2 *. Eurosurveillance 2013 2 Culture has been negleted in clinical microbiology, very few new media have been recently very few introduced but it is still central for: Causality Suceptibility testing Genome sequencing© by author ESCMID Online Lecture Library Pathophysiology 3 NEW IDENTIFICATIONS Helicobacter pylori • Peptic ulcer disease • Cancer of the stomach, grown in 1983 © by author ESCMIDSeen sinceOnline the Lecture 19th century Library 4 © by author ESCMID Online Lecture Library 5 PROGRESSES MADE IN MICROBIOLOGY FROM 1979 TO 2012 THANKS TO THE DEVELOPMENT OF NEW TECHNOLOGIES © by author a) the ESCMIDleft ordinate axis refers toOnline the cumulative numbers Lecture of bacterial species Library with validly published names (green curve); the right ordinate axis refers to the cumulative numbers of sequenced bacterial genomes (purple) and sequenced viral genomes (blue); 6 © by author b) the left ordinate axis refers to the numbers of articles containing “metagenome” as keyword (red) and of articles containing “microbiota” as keyword (grey); the right ordinate axisESCMID refers to the numbers Online of articles containing Lecture “MALDI-TOF” andLibrary “clinical microbiology” as keywords (orange). -
Biochemical and Phylogenetic Analyses of Psychrophilic Isolates Belonging to the Arthrobacter Subgroup and Description of Arthrobacter Psychrolactophilus, Sp
Arch Microbiol (1999) 171:355–363 © Springer-Verlag 1999 ORIGINAL PAPER Jennifer Loveland-Curtze · Peter P. Sheridan · Kevin R. Gutshall · Jean E. Brenchley Biochemical and phylogenetic analyses of psychrophilic isolates belonging to the Arthrobacter subgroup and description of Arthrobacter psychrolactophilus, sp. nov. Received: 17 December 1998 / Accepted: 12 March 1999 Abstract During our work on psychrophilic microorgan- their cold-active enzymes, particularly β-galactosidases. isms we obtained a large collection of new isolates. In or- During this work we have isolated numerous organisms der to identify six of these, we examined their growth pro- from geographically distant habitats ranging from Penn- perties, cell wall compositions, and their 16S rRNA gene sylvania farmlands to Antarctica. Many of these psy- sequences. The results showed that all of the isolates are chrophiles are gram-positive, non-spore-forming rods. gram-positive, aerobic, contain lysine in their cell walls, Four isolates (B7, D2, D5, and D10) were physiologically and belong to the high mol% G+C Arthrobacter subgroup. characterized and assigned to the genus Arthrobacter be- Phylogenetic analysis of the 16S rRNA genes grouped cause they are strict aerobes, have rod/coccus morpholog- five isolates obtained from a small geographical region ical cycles, and contain lysine in their cell walls (Love- into a monophyletic clade. Isolate B7 had a 16S rRNA se- land et al. 1994; DePrada et al. 1996). quence that was 94.3% similar to that of Arthrobacter Arthrobacter species are members of the high mol% polychromogenes and 94.4% similar to that of Arthro- G+C actinomycete-coryneform bacteria (Stackebrandt bacter oxydans. -
UNIVERSITY of CALIFORNIA RIVERSIDE Gustatory Receptors In
UNIVERSITY OF CALIFORNIA RIVERSIDE Gustatory Receptors in Mosquito Olfaction and Host-Seeking Behavior A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Entomology by Genevieve Mitchell Tauxe March 2015 Dissertation Committee: Dr. Anandasankar Ray, Chairperson Dr. Michael E. Adams Dr. Ring T. Cardé Dr. Jocelyn G. Millar Copyright by Genevieve Mitchell Tauxe 2015 The Dissertation of Genevieve Mitchell Tauxe is approved: Committee Chairperson University of California, Riverside Acknowledgements First, I thank the anonymous odor donors who participated in the experiments described here. They variously washed their feet in the bathroom sink, walked around for hours with beads in their socks (which, no, is not terribly comfortable), and continually showed up no matter how many times we kept asking for more socks. Thank you for your generosity, and for your stinky feet. Now go find yourself on page 73. I thank my advisor, Anand Ray, for all of his help and support over my graduate career. He has taught me so much about how to do research, and also how to compose manuscripts, give presentations, and talk about science. I also thank my committee members, Ring Cardé, Jocelyn Millar, and Mike Adams, for offering so much helpful advice and support over the years, both during official committee meetings and on many other occasions. I thank all the Ray lab and Dahanukar lab members for making the laboratory a fun and productive place to work. In particular, Paulina Ngo performed most of the behavior tests reported in Chapter 4, Tom Guda helped with many behavioral assays, and Greg Pask helped with cloning. -
Data of Read Analyses for All 20 Fecal Samples of the Egyptian Mongoose
Supplementary Table S1 – Data of read analyses for all 20 fecal samples of the Egyptian mongoose Number of Good's No-target Chimeric reads ID at ID Total reads Low-quality amplicons Min length Average length Max length Valid reads coverage of amplicons amplicons the species library (%) level 383 2083 33 0 281 1302 1407.0 1442 1769 1722 99.72 466 2373 50 1 212 1310 1409.2 1478 2110 1882 99.53 467 1856 53 3 187 1308 1404.2 1453 1613 1555 99.19 516 2397 36 0 147 1316 1412.2 1476 2214 2161 99.10 460 2657 297 0 246 1302 1416.4 1485 2114 1169 98.77 463 2023 34 0 189 1339 1411.4 1561 1800 1677 99.44 471 2290 41 0 359 1325 1430.1 1490 1890 1833 97.57 502 2565 31 0 227 1315 1411.4 1481 2307 2240 99.31 509 2664 62 0 325 1316 1414.5 1463 2277 2073 99.56 674 2130 34 0 197 1311 1436.3 1463 1899 1095 99.21 396 2246 38 0 106 1332 1407.0 1462 2102 1953 99.05 399 2317 45 1 47 1323 1420.0 1465 2224 2120 98.65 462 2349 47 0 394 1312 1417.5 1478 1908 1794 99.27 501 2246 22 0 253 1328 1442.9 1491 1971 1949 99.04 519 2062 51 0 297 1323 1414.5 1534 1714 1632 99.71 636 2402 35 0 100 1313 1409.7 1478 2267 2206 99.07 388 2454 78 1 78 1326 1406.6 1464 2297 1929 99.26 504 2312 29 0 284 1335 1409.3 1446 1999 1945 99.60 505 2702 45 0 48 1331 1415.2 1475 2609 2497 99.46 508 2380 30 1 210 1329 1436.5 1478 2139 2133 99.02 1 Supplementary Table S2 – PERMANOVA test results of the microbial community of Egyptian mongoose comparison between female and male and between non-adult and adult. -
Genomic and Transcriptomic Insights Into Calcium Carbonate Biomineralization by Marine Actinobacterium Brevibacterium Linens BS258
fmicb-08-00602 April 4, 2017 Time: 15:2 # 1 ORIGINAL RESEARCH published: 06 April 2017 doi: 10.3389/fmicb.2017.00602 Genomic and Transcriptomic Insights into Calcium Carbonate Biomineralization by Marine Actinobacterium Brevibacterium linens BS258 Yuying Zhu1,2,3†, Ning Ma1,2,3†, Weihua Jin4, Shimei Wu5 and Chaomin Sun1,2* 1 Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China, 2 Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China, 3 College of Earth Science, University of Chinese Academy of Sciences, Beijing, China, 4 College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China, 5 College of Life Sciences, Qingdao University, Qingdao, China Calcium carbonate (CaCO3) biomineralization has been investigated due to its wide range of scientific and technological implications, however, the molecular mechanisms of this important geomicrobiological process are largely unknown. Here, a urease- Edited by: positive marine actinobacterium Brevibacterium linens BS258 was demonstrated to Qiang Wang, Institute of Hydrobiology (CAS), China effectively form CaCO3 precipitates. Surprisingly, this bacterium could also dissolve 2C Reviewed by: the formed CaCO3 with the increase of the Ca concentration. To disclose the Xiaoke Hu, mechanisms of biomineralization, the genome of B. linens BS258 was further completely Yantai Institute of Coastal Zone Research (CAS), China sequenced. Interestingly, the expression of three carbonic anhydrases was significantly C Bruno A. Martinez, up-regulated along with the increase of Ca2 concentration and the extent of calcite Lawrence Berkeley National dissolution. Moreover, transcriptome analyses revealed that increasing concentration Laboratory, USA of Ca2C induced KEGG pathways including quorum sensing (QS) in B.