Eight Novel Mutations of the Androgen Receptor Gene in Patients with Androgen Insensitivity Syndrome
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Missense Mutations of MADH4: Characterization of the Mutational Hot Spot and Functional Consequences in Human Tumors
Vol. 10, 1597–1604, March 1, 2004 Clinical Cancer Research 1597 Featured Article Missense Mutations of MADH4: Characterization of the Mutational Hot Spot and Functional Consequences in Human Tumors Christine A. Iacobuzio-Donahue,1 Jason Song,5 Introduction Giovanni Parmiagiani,4 Charles J. Yeo,2,3 Human pancreatic ductal adenocarcinomas inactivate the Ralph H. Hruban,1,2 and Scott E. Kern2 tumor suppressor gene MADH4 (DPC4, SMAD4) with a high frequency (1). This inactivation occurs most commonly by Departments of 1Pathology, 2Oncology, 3Surgery, and 4Public Health, The Johns Hopkins Medical Institutions, Baltimore, Maryland, and homozygous deletion (HD), but some tumors may also inacti- 5Temple University School of Medicine, Philadelphia, Pennsylvania vate the gene by loss of heterozygosity (LOH) coupled with a mutation in the remaining allele. Inactivation by nonsense mu- tation may cause the loss of protein expression by enhanced Abstract proteosomal degradation (2, 3). Even when expressed as protein, Purpose and Experimental Design: The mutational spec- missense mutations may result in loss of a specific function of trum of MADH4 (DPC4/SMAD4) opens valuable insights the Madh4 protein such as DNA binding or Smad protein into the functions of this protein that confer its tumor- interactions (2–9). Thus, the location of these mutations can suppressive nature in human tumors. We present the provide clues to key structural features that mediate the tumor- MADH4 genetic status determined on a new set of pancre- suppressive function of MADH4. atic, biliary, and duodenal cancers with comparison to the Members of the Smad protein family, including Madh4, mutational data reported for various tumor types. -
Bio 102 Practice Problems Genetic Code and Mutation
Bio 102 Practice Problems Genetic Code and Mutation Multiple choice: Unless otherwise directed, circle the one best answer: 1. Choose the one best answer: Beadle and Tatum mutagenized Neurospora to find strains that required arginine to live. Based on the classification of their mutants, they concluded that: A. one gene corresponds to one protein. B. DNA is the genetic material. C. "inborn errors of metabolism" were responsible for many diseases. D. DNA replication is semi-conservative. E. protein cannot be the genetic material. 2. Choose the one best answer. Which one of the following is NOT part of the definition of a gene? A. A physical unit of heredity B. Encodes a protein C. Segement of a chromosome D. Responsible for an inherited characteristic E. May be linked to other genes 3. A mutation converts an AGA codon to a TGA codon (in DNA). This mutation is a: A. Termination mutation B. Missense mutation C. Frameshift mutation D. Nonsense mutation E. Non-coding mutation 4. Beadle and Tatum performed a series of complex experiments that led to the idea that one gene encodes one enzyme. Which one of the following statements does not describe their experiments? A. They deduced the metabolic pathway for the synthesis of an amino acid. B. Many different auxotrophic mutants of Neurospora were isolated. C. Cells unable to make arginine cannot survive on minimal media. D. Some mutant cells could survive on minimal media if they were provided with citrulline or ornithine. E. Homogentisic acid accumulates and is excreted in the urine of diseased individuals. 5. -
(12) United States Patent (10) Patent No.: US 6,686,188 B2 Gu Et Al
US0066861.88B2 (12) United States Patent (10) Patent No.: US 6,686,188 B2 Gu et al. (45) Date of Patent: Feb. 3, 2004 (54) POLYNUCLEOTIDE ENCODING A HUMAN 4,469,863 A 9/1984 Tso et al. MYOSIN-LIKE POLYPEPTIDE EXPRESSED 4,476,301 A 10/1984 Imbach et al. PREDOMINANTLY IN HEART AND MUSCLE 4,708,871 A 11/1987 Geysen 5,023.243 A 6/1991 Tullis 5,034,506 A 7/1991 Summerton et al. (75) Inventors: Yizhong Gu, Sunnyvale, CA (US); 5,166,315 A 11/1992 Summerton et al. Yonggang Ji, San Mateo, CA (US); 5,177,196 A 1/1993 Meyer, Jr. et al. Sharron Gaynor Penn, San Mateo, CA 5,185,444 A 2/1993 Summerton et al. (US); David Kagen Hanzel, Palo Alto, 5,186,042 A 2/1993 Miyazaki CA (US); David Russell Rank, 5,188,897 A 2/1993 Suhadolnik et al. Fremont, CA (US); Wensheng Chen, 5,214,134 A 5/1993 Weis et al. Mountain View, CA (US); Mark E. 5,216,141 A 6/1993 Benner Shannon, Livermore, CA (US) 5,235,033 A 8/1993 Summerton et al. 5,264,423 A 11/1993 Cohen et al. (73) Assignee: Amersham PLC, Buckinghamshire 5,264,562 A 11/1993 Matteucci 5,264,564 A 11/1993 Matteucci (GB) 5,272,071 A 12/1993 Chappel (*) Notice: Subject to any disclaimer, the term of this 5,276,019 A 1/1994 Cohen et al. patent is extended or adjusted under 35 5,278.302 A 1/1994 Caruthers et al. -
COVID-19: the Disease, the Immunological Challenges, the Treatment with Pharmaceuticals and Low-Dose Ionizing Radiation
cells Review COVID-19: The Disease, the Immunological Challenges, the Treatment with Pharmaceuticals and Low-Dose Ionizing Radiation Jihang Yu 1 , Edouard I. Azzam 1, Ashok B. Jadhav 1 and Yi Wang 1,2,* 1 Radiobiology and Health, Isotopes, Radiobiology & Environment Directorate (IRED), Canadian Nuclear Laboratories (CNL), Chalk River, ON K0J 1J0, Canada; [email protected] (J.Y.); [email protected] (E.I.A.); [email protected] (A.B.J.) 2 Department of Biochemistry Microbiology and Immunology, Faculty of Medicine, University of Ottawa, Ottawa, ON K1H 8M5, Canada * Correspondence: [email protected]; Tel.: +1-613-584-3311 (ext. 42653) Abstract: The year 2020 will be carved in the history books—with the proliferation of COVID-19 over the globe and with frontline health workers and basic scientists worldwide diligently fighting to alleviate life-threatening symptoms and curb the spread of the disease. Behind the shocking prevalence of death are countless families who lost loved ones. To these families and to humanity as a whole, the tallies are not irrelevant digits, but a motivation to develop effective strategies to save lives. However, at the onset of the pandemic, not many therapeutic choices were available besides supportive oxygen, anti-inflammatory dexamethasone, and antiviral remdesivir. Low-dose radiation (LDR), at a much lower dosage than applied in cancer treatment, re-emerged after a Citation: Yu, J.; Azzam, E.I.; Jadhav, 75-year silence in its use in unresolved pneumonia, as a scientific interest with surprising effects in A.B.; Wang, Y. COVID-19: The soothing the cytokine storm and other symptoms in severe COVID-19 patients. -
Molecular Genetic Approaches to Decrease Mis-Incorporation of Non
Molecular genetic approaches to decrease mis-incorporation of non-canonical branched chain amino acids into a recombinant protein in Escherichia coli Ángel Córcoles García Molecular genetic approaches to decrease mis- incorporation of non-canonical branched chain amino acids into a recombinant protein in Escherichia coli Ángel Córcoles García - Dissertation Abstract II Molecular genetic approaches to decrease mis-incorporation of non-canonical branched chain amino acids into a recombinant protein in Escherichia coli vorgelegt von M. Sc. Ángel Córcoles García ORCID: 0000-0001-9300-5780 von der Fakultät III-Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktor der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. Juri Rappsilber, Institut für Biotechnologie, TU Berlin, Berlin Gutachter: Prof. Dr. Peter Neubauer, Institut für Biotechnologie, TU Berlin, Berlin Gutachter: Prof. Dr. Pau Ferrer, Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), Spain Gutachter: Dr. Heinrich Decker, Sanofi-Aventis Deutschland GmbH, Frankfurt am Main Tag der wissenschaftlichen Aussprache: 11. Dezember 2019 Berlin 2020 Molecular genetic approaches to decrease mis-incorporation of non-canonical branched chain amino acids into a recombinant protein in Escherichia coli Ángel Córcoles García Abstract The incorporation of non-canonical branched chain amino acids (ncBCAA) such as norleucine, norvaline and β-methylnorleucine into recombinant proteins during E.coli production processes has become a crucial matter of contention in the pharmaceutical industry, since such mis-incorporation can lead to production of altered proteins, having non optimal characteristics. Hence, a need exists for novel strategies valuable for preventing the mis-incorporation of ncBCAA into recombinant proteins. This work presents the development of novel E. -
Nonsense and Missense Mutations in Hemophilia A: Estimate of the Relative Mutation Rate at CG Dinucleotides Hagop Youssoufian,* Stylianos E
Am. J. Hum. Genet. 42:718-725, 1988 Nonsense and Missense Mutations in Hemophilia A: Estimate of the Relative Mutation Rate at CG Dinucleotides Hagop Youssoufian,* Stylianos E. Antonarakis,* William Bell,t Anne M. Griffin,4 and Haig H. Kazazian, Jr.* *Genetics Unit, Department of Pediatrics, and tDivision of Hematology, Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore; and tDivision of Hematology, Department of Medicine, University of North Carolina School of Medicine, Chapel Hill Summary Hemophilia A is an X-linked disease of coagulation caused by deficiency of factor VIII. Using cloned cDNA and synthetic oligonucleotide probes, we have now screened 240 patients and found CG-to-TG transitions in an exon in nine. We have previously reported four of these patients; and here we report the remaining five, all of whom were severely affected. In one patient a TaqI site was lost in exon 23, and in the other four it was lost in exon 24. The novel exon 23 mutation is a CG-to-TG substitution at the codon for amino acid residue 2166, producing a nonsense codon in place of the normal codon for arginine. Simi- larly, the exon 24 mutations are also generated by CG-to-TG transitions, either on the sense strand produc- ing nonsense mutations or on the antisense strand producing missense mutations (Arg to Gln) at position 2228. The novel missense mutations are the first such mutations observed in association with severe hemo- philia A. These results provide further evidence that recurrent mutations are not uncommon in hemophilia A, and they also allow us to estimate that the extent of hypermutability of CG dinucleotides is 10-20 times greater than the average mutation rate for hemophilia A. -
Nucleotide Base Coding and Am1ino Acid Replacemients in Proteins* by Emil L
VOL. 48, 1962 BIOCHEMISTRY: E. L. SAIITH 677 18 Britten, R. J., and R. B. Roberts, Science, 131, 32 (1960). '9 Crestfield, A. M., K. C. Smith, and F. WV. Allen, J. Biol. Chem., 216, 185 (1955). 20 Gamow, G., Nature, 173, 318 (1954). 21 Brenner, S., these PROCEEDINGS, 43, 687 (1957). 22 Nirenberg, M. WV., J. H. Matthaei, and 0. WV. Jones, unpublished data. 23 Crick, F. H. C., L. Barnett, S. Brenner, and R. J. Watts-Tobin, Nature, 192, 1227 (1961). 24 Levene, P. A., and R. S. Tipson, J. Biol. Ch-nn., 111, 313 (1935). 25 Gierer, A., and K. W. Mundry, Nature, 182, 1437 (1958). 2' Tsugita, A., and H. Fraenkel-Conrat, J. Mllot. Biol., in press. 27 Tsugita, A., and H. Fraenkel-Conrat, personal communication. 28 Wittmann, H. G., Naturwissenschaften, 48, 729 (1961). 29 Freese, E., in Structure and Function of Genetic Elements, Brookhaven Symposia in Biology, no. 12 (1959), p. 63. NUCLEOTIDE BASE CODING AND AM1INO ACID REPLACEMIENTS IN PROTEINS* BY EMIL L. SMITHt LABORATORY FOR STUDY OF HEREDITARY AND METABOLIC DISORDERS AND THE DEPARTMENTS OF BIOLOGICAL CHEMISTRY AND MEDICINE, UNIVERSITY OF UTAH COLLEGE OF MEDICINE Communicated by Severo Ochoa, February 14, 1962 The problem of which bases of messenger or template RNA' specify the coding of amino acids in proteins has been largely elucidated by the use of synthetic polyri- bonucleotides.2-7 For these triplet nucleotide compositions (Table 1), it is of in- terest to examine some of the presently known cases of amino acid substitutions in polypeptides or proteins of known structure. -
The Genomics Era: the Future of Genetics in Medicine - Glossary
The Genomics Era: the Future of Genetics in Medicine - Glossary The glossary below provides a list of key terms used throughout the course. You do not need to read them all now; we’ll be linking back to the main glossary step wherever these terms appear, so you may refer back to this list if you are unsure of the terminology being used. Term Definition The process of matching reads back to their original Alignment position in the reference genome. An allele is one of a number of alternative forms of the same gene or genetic locus. We inherit one copy Allele of our genetic code from our mother and one copy of our genetic code from our father. Each copy is known as an allele. Microarray based genomic comparative hybridisation. This is a technique used to detect chromosome imbalances by comparing patient and control DNA and comparing differences between the two sets. It is Array CGH a useful technique for detecting small chromosome deletions and duplications which would not have been detected with more traditional karyotyping techniques. A unit of DNA. There are four bases which form the Base cross links (or rungs) of the DNA double helix: adenine (A), thymine (T), guanine (G) and cytosine (C). Capture see Target enrichment. The process by which a cell becomes specialized in Cell differentiation order to perform a specific function. Centromere The point at which the sister chromatids are joined. #1 FutureLearn A structure located in the nucleus all living cells, comprised of DNA bound around proteins called histones. The normal number of chromosomes in each Chromosome human cell nucleus is 46 and is composed of 22 pairs of autosomes and a pair of sex chromosomes which determine gender: males have an X and a Y chromosome whilst females have two X chromosomes. -
Transmembrane Domain 1 of Human Organic Anion Transporting Polypeptide 2B1 Is
Molecular Pharmacology Fast Forward. Published on June 5, 2018 as DOI: 10.1124/mol.118.111914 This article has not been copyedited and formatted. The final version may differ from this version. MOL #111914 Transmembrane domain 1 of human organic anion transporting polypeptide 2B1 is essential for transporter function and stability Zihui Fang, Jiujiu Huang, Jie Chen, Shaopeng Xu, Zhaojian Xiang, Mei Hong College of Life Sciences, South China Agricultural University, Guangzhou, China (Z.F., J.H., Downloaded from J.C, S.X, Z.X, M.H.), and Guangdong Provincial Key Laboratory of Protein Function and Regulation in Agricultural Organisms, South China Agricultural University, Guangzhou, molpharm.aspetjournals.org China (J.H., M.H.) at ASPET Journals on September 29, 2021 1 Molecular Pharmacology Fast Forward. Published on June 5, 2018 as DOI: 10.1124/mol.118.111914 This article has not been copyedited and formatted. The final version may differ from this version. MOL #111914 Running title: Transmembrane domain 1 is important for OATP2B1 function Address correspondence to: Mei Hong, College of Life Sciences, South China Agricultural University, Guangzhou, China, Tel: (8620)8528-0901; Fax: (8620)8528-2180; Email: [email protected] Downloaded from Number of text pages: 30 molpharm.aspetjournals.org Number of tables: 1 Number of figures: 8 Number of references: 37 at ASPET Journals on September 29, 2021 Number of words in the Abstract: 237 Number of words in the Introduction: 682 Number of words in the Discussion: 1113 Abbreviations: BFA1: bafilomycin A1; ES: estrone-3-sulfate; NHS-SS-biotin: sulfosuccinimidyl 2-(biotinamido) -ethyl-1, 3-dithiopropionate; OATP: organic anion transporting polypeptide; TM: transmembrane domain 2 Molecular Pharmacology Fast Forward. -
Purification, Kinetic Characterization, and Site-Directed Mutagenesis of Methanothermobacter Thermautotrophicus RFAP Synthase Produced in Escherichia Coli
AIMS Microbiology, 5(3): 186–204. DOI: 10.3934/microbiol.2019.3.186 Received: 02 May 2019 Accepted: 15 July 2019 Published: 23 July 2019 http://www.aimspress.com/journal/microbiology Research article Purification, kinetic characterization, and site-directed mutagenesis of Methanothermobacter thermautotrophicus RFAP Synthase Produced in Escherichia coli Matthew E. Bechard1, Payam Farahani2, Dina Greene3, Anna Pham2, Andrew Orry4 and Madeline E. Rasche2,* 1 Department of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232 2 Chemistry and Biochemistry Department, California State University at Fullerton, 800 North State College Blvd., Fullerton, CA 92834 3 Northern California Regional Laboratories, The Permanente Medical Group, Berkeley, CA 94710 4 Molsoft L.L.C., 11199 Sorrento Valley Road, S209, San Diego, CA 92121 Correspondence: Email: [email protected]; Tel: 6572783885; Fax: 6572785613. Abstract: Methane-producing archaea are among a select group of microorganisms that utilize tetrahydromethanopterin (H4MPT) as a one-carbon carrier instead of tetrahydrofolate. In H4MPT biosynthesis, β-ribofuranosylaminobenzene 5’-phosphate (RFAP) synthase catalyzes the production of RFAP, CO2, and pyrophosphate from p-aminobenzoic acid (pABA) and phosphoribosyl-pyrophosphate (PRPP). In this work, to gain insight into amino acid residues required for substrate binding, RFAP synthase from Methanothermobacter thermautotrophicus was produced in Escherichia coli, and site-directed mutagenesis was used to alter arginine 26 (R26) and aspartic acid 19 (D19), located in a conserved sequence of amino acids resembling the pABA binding site of dihydropteroate synthase. Replacement of R26 with lysine increased the KM for pABA by an order of magnitude relative to wild-type enzyme without substantially altering the KM for PRPP. -
A Novel Missense Mutation in HSF4 Causes Autosomal-Dominant
Eye (2018) 32, 806–812 © 2018 Macmillan Publishers Limited, part of Springer Nature. All rights reserved 0950-222X/18 www.nature.com/eye 1,5 1,2,5 3,4 LABORATORY STUDY A novel missense V Berry , N Pontikos , A Moore , ACW Ionides3, V Plagnol2, ME Cheetham1 mutation in HSF4 and M Michaelides1,3 causes autosomal- dominant congenital lamellar cataract in a British family Abstract manifestations and is a predominant feature in 4200 genetic disorders. Congenital cataract may Purpose Inherited cataract, opacification of the lens, is the most common worldwide be familial and display considerable genotypic 4 cause of blindness in children. We aimed to and phenotypic heterogeneity. Inheritance is identify the genetic cause of isolated most commonly autosomal dominant (AD), 1 Department of Genetics, autosomal-dominant lamellar cataract in a usually with complete penetrance but with UCL Institute of five-generation British family. highly variable expressivity. The phenotypic Ophthalmology, London, fi UK Methods Whole exome sequencing (WES) classi cation of the cataract depends on the was performed on two affected individuals of position and type of the lens opacity such as: 2UCL Genetics Institute, the family and further validated by direct anterior polar, posterior polar, nuclear, lamellar, University College London, sequencing in family members. coralliform, blue-dot (cerulean), cortical, London UK Results A novel missense mutation pulverulent, polymorphic, complete cataract, 4 and posterior nuclear cataract.5,6 Significant 3 fi NM_001040667.2:c.190A G;p.K64E was Moor elds Eye Hospital, fi London, UK identi ed in the DNA-binding-domain of progress has been made in identifying the heat-shock transcription factor 4 (HSF4) and molecular genetic basis of human cataract. -
Niemann-Pick Disease: a Frequent Missense Mutation in the Acid
Proc. Natl. Acad. Sci. USA Vol. 88, pp. 3748-3752, May 1991 Genetics Niemann-Pick disease: A frequent missense mutation in the acid sphingomyelinase gene of Ashkenazi Jewish type A and B patients (lysosomal hydrolase/sphingomyelin/lysosomal storage disease/polymerase chain reaction/heterozygote detection) ORNA LEVRAN, ROBERT J. DESNICK, AND EDWARD H. SCHUCHMAN* Division of Medical and Molecular Genetics, Mount Sinai School of Medicine, New York, NY 10029 Communicated by Donald S. Fredrickson, November 26, 1990 ABSTRACT Although the A and B subtypes of Niemana- sence of neurologic manifestations, and survival into adult- Pick disease (NPD) both result from the deficient activity of ad hood. The nature of the biochemical and molecular defects sphingomyelinase (ASM; sphingomyelin cholinephosphohydro- that underlie the remarkable clinical heterogeneity in the A lase, EC 3.1.4.12) and the lysosomal aumaon of sphingo- and B subtypes remains unknown. Although patients with myelin, they have remarkably distinct phenotypes. Type A dis- both subtypes have residual ASM activity (~1 to 10% of ease s afatal neurodegenerative disorderofinfancy, whereas tpe normal), biochemical analyses cannot reliably distinguish the B disease has no neurologic miestations and is characterized two phenotypes. Moreover, the clinical course of type B primarily by reticuloendothelial involvement and survival into NPD is highly variable, and it is not presently possible to adulthood. Both disorders are more frequent among individuals correlate disease severity with the level of residual ASM of Ashkenai Jewis ancestry than in the general population. The activity. recent isolation and characterization of cDNA and genomic Types A and B NPD occur at least 10 times more frequently sequences encoding ASM has facilitated investigation of the among individuals of Ashkenazi Jewish ancestry than in the molecular lesions causing the NPD subtypes.