Snow and Glacial Algae: a Review1
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Variation in Snow Algae Blooms in the Coast Range of British Columbia
ORIGINAL RESEARCH published: 15 April 2020 doi: 10.3389/fmicb.2020.00569 Variation in Snow Algae Blooms in the Coast Range of British Columbia Casey B. Engstrom, Kurt M. Yakimovich and Lynne M. Quarmby* Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada Snow algae blooms cover vast areas of summer snowfields worldwide, reducing albedo and increasing snow melt. Despite their global prevalence, little is known about the algae species that comprise these blooms. We used 18S and rbcL metabarcoding and light microscopy to characterize algae species composition in 31 snow algae blooms in the Coast Range of British Columbia, Canada. This study is the first to thoroughly document regional variation between blooms. We found all blooms were dominated by the genera Sanguina, Chloromonas, and Chlainomonas. There was considerable variation between blooms, most notably species assemblages above treeline were distinct from forested sites. In contrast to previous studies, the snow algae genus Chlainomonas was abundant and widespread in snow algae blooms. We found few taxa using traditional 18S metabarcoding, but the high taxonomic resolution of rbcL revealed Edited by: substantial diversity, including OTUs that likely represent unnamed species of snow algae. David Anthony Pearce, These three cross-referenced datasets (rbcL, 18S, and microscopy) reveal that alpine Northumbria University, United Kingdom snow algae blooms are more diverse than previously thought, with different species of Reviewed by: algae dominating different elevations. Stefanie Lutz, Keywords: snow, algae, microbiome, amplicon, rbcL, 18S, alpine, metabarcoding Agroscope, Switzerland Hanzhi Lin, University of Maryland Center for Environmental Science (UMCES), 1. INTRODUCTION United States *Correspondence: Each summer, vast areas of snow surface are colored red by snow algae blooms in polar and Lynne M. -
Flagellar, Cellular and Organismal Polarity in Volvox Carteri
SUNY Geneseo KnightScholar Biology Faculty/Staff Works Department of Biology 1993 Flagellar, cellular and organismal polarity in Volvox carteri Harold J. Hoops SUNY Geneseo Follow this and additional works at: https://knightscholar.geneseo.edu/biology Recommended Citation Hoops H.J. (1993) Flagellar, cellular and organismal polarity in Volvox carteri. Journal of Cell Science 104: 105-117. doi: This Article is brought to you for free and open access by the Department of Biology at KnightScholar. It has been accepted for inclusion in Biology Faculty/Staff Works by an authorized administrator of KnightScholar. For more information, please contact [email protected]. Journal of Cell Science 104, 105-117 (1993) 105 Printed in Great Britain © The Company of Biologists Limited 1993 Flagellar, cellular and organismal polarity in Volvox carteri Harold J. Hoops Department of Biology, 1 Circle Drive, SUNY-Genesco, Genesco, NY 14454, USA SUMMARY It has previously been shown that the flagellar appara- reorientation of flagellar apparatus components. This tus of the mature Volvox carteri somatic cell lacks the reorientation also results in the movement of the eye- 180˚ rotational symmetry typical of most unicellular spot from a position nearer one of the flagellar bases to green algae. This asymmetry has been postulated to be a position approximately equidistant between them. By the result of rotation of each half of the flagellar appa- analogy to Chlamydomonas, the anti side of the V. car - ratus. Here it is shown that V. carteri axonemes contain teri somatic cell faces the spheroid anterior, the syn side polarity markers that are similar to those found in faces the spheroid posterior. -
The Hawaiian Freshwater Algae Biodiversity Survey
Sherwood et al. BMC Ecology 2014, 14:28 http://www.biomedcentral.com/1472-6785/14/28 RESEARCH ARTICLE Open Access The Hawaiian freshwater algae biodiversity survey (2009–2014): systematic and biogeographic trends with an emphasis on the macroalgae Alison R Sherwood1*, Amy L Carlile1,2, Jessica M Neumann1, J Patrick Kociolek3, Jeffrey R Johansen4, Rex L Lowe5, Kimberly Y Conklin1 and Gernot G Presting6 Abstract Background: A remarkable range of environmental conditions is present in the Hawaiian Islands due to their gradients of elevation, rainfall and island age. Despite being well known as a location for the study of evolutionary processes and island biogeography, little is known about the composition of the non-marine algal flora of the archipelago, its degree of endemism, or affinities with other floras. We conducted a biodiversity survey of the non-marine macroalgae of the six largest main Hawaiian Islands using molecular and microscopic assessment techniques. We aimed to evaluate whether endemism or cosmopolitanism better explain freshwater algal distribution patterns, and provide a baseline data set for monitoring future biodiversity changes in the Hawaiian Islands. Results: 1,786 aquatic and terrestrial habitats and 1,407 distinct collections of non-marine macroalgae were collected from the islands of Kauai, Oahu, Molokai, Maui, Lanai and Hawaii from the years 2009–2014. Targeted habitats included streams, wet walls, high elevation bogs, taro fields, ditches and flumes, lakes/reservoirs, cave walls and terrestrial areas. Sites that lacked freshwater macroalgae were typically terrestrial or wet wall habitats that were sampled for diatoms and other microalgae. Approximately 50% of the identifications were of green algae, with lesser proportions of diatoms, red algae, cyanobacteria, xanthophytes and euglenoids. -
Chilling Out: the Evolution and Diversification of Psychrophilic Algae with a Focus on Chlamydomonadales
Polar Biol DOI 10.1007/s00300-016-2045-4 REVIEW Chilling out: the evolution and diversification of psychrophilic algae with a focus on Chlamydomonadales 1 1 1 Marina Cvetkovska • Norman P. A. Hu¨ner • David Roy Smith Received: 20 February 2016 / Revised: 20 July 2016 / Accepted: 10 October 2016 Ó Springer-Verlag Berlin Heidelberg 2016 Abstract The Earth is a cold place. Most of it exists at or Introduction below the freezing point of water. Although seemingly inhospitable, such extreme environments can harbour a Almost 80 % of the Earth’s biosphere is permanently variety of organisms, including psychrophiles, which can below 5 °C, including most of the oceans, the polar, and withstand intense cold and by definition cannot survive at alpine regions (Feller and Gerday 2003). These seemingly more moderate temperatures. Eukaryotic algae often inhospitable places are some of the least studied but most dominate and form the base of the food web in cold important ecosystems on the planet. They contain a huge environments. Consequently, they are ideal systems for diversity of prokaryotic and eukaryotic organisms, many of investigating the evolution, physiology, and biochemistry which are permanently adapted to the cold (psychrophiles) of photosynthesis under frigid conditions, which has (Margesin et al. 2007). The environmental conditions in implications for the origins of life, exobiology, and climate such habitats severely limit the spread of terrestrial plants, change. Here, we explore the evolution and diversification and therefore, primary production in perpetually cold of photosynthetic eukaryotes in permanently cold climates. environments is largely dependent on microbes. Eukaryotic We highlight the known diversity of psychrophilic algae algae and cyanobacteria are the dominant photosynthetic and the unique qualities that allow them to thrive in severe primary producers in cold habitats, thriving in a surprising ecosystems where life exists at the edge. -
Green Algae in Tundra Soils Affected by Coal Mine Pollutions*
Biologia 63/6: 831—835, 2008 Section Botany DOI: 10.2478/s11756-008-0107-y Green algae in tundra soils affected by coal mine pollutions* Elena N. Patova 1 &MarinaF.Dorokhova2 1Institute of Biology, Komi Scientific Centre, Ural Division, Russian Academy of Sciences, Kommunisticheskaya st. 28, 167982, Syktyvkar, Komi Republic, Russia; e-mail: [email protected] 2Moscow State University, Faculty of Geography, Vorobievy Gory GSP-2, 119992, Moscow, Russia; e-mail: doro- [email protected] Abstract: Green algal communities were investigated in clean and pollution-impacted tundra soils around the large coal mine industrial complex of Vorkuta in the E. European Russian tundra. Samples were collected in three zones of open-cast coal mining with different degrees of pollution-impacted soil transformation. A total of 42 species of algae were found in all zones. The species richness decreased from 27 species in undisturbed zones to 19 species in polluted zones. Under open-cast coal mining impacts the community structure simplified, and the dominant algae complexes changed. Algae that are typical for clean soils disappeared from the communities. The total abundance of green algae (counted together with Xanthophyta) ranged between 100–120 × 103 (cells/g dry soils) in undisturbed zones and 0.5–50 × 103 in polluted zones. Soil algae appear to be better indicators of coal mine technogenic pollution than flowering plants and mosses. Key words: green algae; diversity; coal mine impact; soil; north-European Russian tundra Introduction tundra soils around the large industrial coal mine complex of Vorkuta in the north-European Russian tundra (Fig. 1). Soil algae are an important autotrophic component of This region is exposed to heavy air pollution. -
Transcription of the Hydrogenase Gene During H2 Production in Scenedesmus Obliquus and Chlorella Vulgaris
Transcription of the Hydrogenase Gene during H2 Production in Scenedesmus Obliquus and Chlorella Vulgaris Yahaira de Jesus Tamayo Ordóñez Universidad Autónoma de Coahuila: Universidad Autonoma de Coahuila Benjamin Abraham Ayil Gutiérrez Instituto Politécnico Nacional: Instituto Politecnico Nacional Alejandro Ruiz Marin Universidad Autónoma del Carmen: Universidad Autonoma del Carmen Francisco Alberto Tamayo Ordóñez Universidad Autónoma del Carmen: Universidad Autonoma del Carmen Ileana Maria Mayela Moreno Davila Universidad Autónoma de Coahuila: Universidad Autonoma de Coahuila Leopoldo Ríos González Universidad Autónoma de Coahuila: Universidad Autonoma de Coahuila Jose Antonio Rodriguez de la Garza Universidad Autónoma de Coahuila: Universidad Autonoma de Coahuila Juan Carlos Robles Heredia Universidad Autónoma del Carmen: Universidad Autonoma del Carmen Maria Concepcion Tamayo Ordoñez ( [email protected] ) Universidad Autonoma de Coahuila https://orcid.org/0000-0003-0201-0184 Original article Keywords: microalgae, hydrogenase gene, molecular hydrogen, mutation Posted Date: March 24th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-342043/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/30 Abstract There is ongoing research related to the production of molecular hydrogen today and algae have proven to be good biological models for producing several compounds of interest. We analyzed how genetic variations in hydrogenase genes (hyd) can affect the production of -
Community Characteristics Analysis of Eukaryotic Microplankton Via ITS Gene Metabarcoding Based on Environmental DNA in Lower Reaches of Qiantang River, China
Open Journal of Animal Sciences, 2021, 11, 105-124 https://www.scirp.org/journal/ojas ISSN Online: 2161-7627 ISSN Print: 2161-7597 Community Characteristics Analysis of Eukaryotic Microplankton via ITS Gene Metabarcoding Based on Environmental DNA in Lower Reaches of Qiantang River, China Aiju Zhang1, Jun Wang1, Yabin Hao1, Shanshi Xiao1, Wei Luo1, Ganxiang Wang2, Zhiming Zhou1 1Agriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Freshwater Aquaculture Genetic and Breeding of Zhejiang Province, Zhejiang Research Center of East China Sea Fishery Research Institute, Zhejiang Institute of Freshwater Fisheries, Huzhou, China 2Pinghu Fisheries Technology Promotion Center, Pinghu, China How to cite this paper: Zhang, A.J., Wang, Abstract J., Hao, Y.B., Xiao, S.S., Luo, W., Wang, G.X. and Zhou, Z.M. (2021) Community Eukaryotic microplankton plays an important role in water biotic community Characteristics Analysis of Eukaryotic and in maintaining the stability of water ecosystems. Environmental DNA Microplankton via ITS Gene Metabarcod- metabarcoding provides the opportunity to integrate traditional and emerg- ing Based on Environmental DNA in Low- er Reaches of Qiantang River, China. Open ing approaches to discover more new species, and develop molecular biotic Journal of Animal Sciences, 11, 105-124. indices that can be more rapidly, frequently, and robustly used in water qual- https://doi.org/10.4236/ojas.2021.112009 ity assessments. In order to examine assemblages of eukaryotic microplank- ton in lower reaches of Qiantang River, ITS gene metabarcoding technology Received: January 13, 2021 based on environmental DNA was carried out. As a result, various species of Accepted: March 30, 2021 Published: April 2, 2021 phytoplankton, fungi and zooplankton were annotated on. -
Altitudinal Zonation of Green Algae Biodiversity in the French Alps
Altitudinal Zonation of Green Algae Biodiversity in the French Alps Adeline Stewart, Delphine Rioux, Fréderic Boyer, Ludovic Gielly, François Pompanon, Amélie Saillard, Wilfried Thuiller, Jean-Gabriel Valay, Eric Marechal, Eric Coissac To cite this version: Adeline Stewart, Delphine Rioux, Fréderic Boyer, Ludovic Gielly, François Pompanon, et al.. Altitu- dinal Zonation of Green Algae Biodiversity in the French Alps. Frontiers in Plant Science, Frontiers, 2021, 12, pp.679428. 10.3389/fpls.2021.679428. hal-03258608 HAL Id: hal-03258608 https://hal.archives-ouvertes.fr/hal-03258608 Submitted on 11 Jun 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fpls-12-679428 June 4, 2021 Time: 14:28 # 1 ORIGINAL RESEARCH published: 07 June 2021 doi: 10.3389/fpls.2021.679428 Altitudinal Zonation of Green Algae Biodiversity in the French Alps Adeline Stewart1,2,3, Delphine Rioux3, Fréderic Boyer3, Ludovic Gielly3, François Pompanon3, Amélie Saillard3, Wilfried Thuiller3, Jean-Gabriel Valay2, Eric Maréchal1* and Eric Coissac3* on behalf of The ORCHAMP Consortium 1 Laboratoire de Physiologie Cellulaire et Végétale, CEA, CNRS, INRAE, IRIG, Université Grenoble Alpes, Grenoble, France, 2 Jardin du Lautaret, CNRS, Université Grenoble Alpes, Grenoble, France, 3 Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, Grenoble, France Mountain environments are marked by an altitudinal zonation of habitat types. -
Uncovering Unique Green Algae and Cyanobacteria Isolated from Biocrusts in Highly Saline Potash Tailing Pile Habitats, Using an Integrative Approach
microorganisms Article Uncovering Unique Green Algae and Cyanobacteria Isolated from Biocrusts in Highly Saline Potash Tailing Pile Habitats, Using an Integrative Approach Veronika Sommer 1,2, Tatiana Mikhailyuk 3, Karin Glaser 1 and Ulf Karsten 1,* 1 Institute for Biological Sciences, Applied Ecology and Phycology, University of Rostock, 18059 Rostock, Germany; [email protected] (V.S.); [email protected] (K.G.) 2 upi UmweltProjekt Ingenieursgesellschaft mbH, 39576 Stendal, Germany 3 National Academy of Sciences of Ukraine, M.G. Kholodny Institute of Botany, 01601 Kyiv, Ukraine; [email protected] * Correspondence: [email protected] Received: 4 September 2020; Accepted: 22 October 2020; Published: 27 October 2020 Abstract: Potash tailing piles caused by fertilizer production shape their surroundings because of the associated salt impact. A previous study in these environments addressed the functional community “biocrust” comprising various micro- and macro-organisms inhabiting the soil surface. In that previous study, biocrust microalgae and cyanobacteria were isolated and morphologically identified amongst an ecological discussion. However, morphological species identification maybe is difficult because of phenotypic plasticity, which might lead to misidentifications. The present study revisited the earlier species list using an integrative approach, including molecular methods. Seventy-six strains were sequenced using the markers small subunit (SSU) rRNA gene and internal transcribed spacer (ITS). Phylogenetic analyses confirmed some morphologically identified species. However, several other strains could only be identified at the genus level. This indicates a high proportion of possibly unknown taxa, underlined by the low congruence of the previous morphological identifications to our results. In general, the integrative approach resulted in more precise species identifications and should be considered as an extension of the previous morphological species list. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
A Taxonomic Reassessment of Chlamydomonas Meslinii (Volvocales, Chlorophyceae) with a Description of Paludistella Gen.Nov
Phytotaxa 432 (1): 065–080 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.432.1.6 A taxonomic reassessment of Chlamydomonas meslinii (Volvocales, Chlorophyceae) with a description of Paludistella gen.nov. HANI SUSANTI1,6, MASAKI YOSHIDA2, TAKESHI NAKAYAMA2, TAKASHI NAKADA3,4 & MAKOTO M. WATANABE5 1Life Science Innovation, School of Integrative and Global Major, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan. 2Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8577, Japan. 3Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan. 4Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan. 5Algae Biomass Energy System Development and Research Center, University of Tsukuba. 6Research Center for Biotechnology, Indonesian Institute of Sciences, Jl. Raya Bogor KM 46 Cibinong West Java, Indonesia. Corresponding author: [email protected] Abstract Chlamydomonas (Volvocales, Chlorophyceae) is a large polyphyletic genus that includes numerous species that should be classified into independent genera. The present study aimed to examine the authentic strain of Chlamydomonas meslinii and related strains based on morphological and molecular data. All the strains possessed an asteroid chloroplast with a central pyrenoid and hemispherical papilla; however, they were different based on cell and stigmata shapes. Molecular phylogenetic analyses based on 18S rDNA, atpB, and psaB indicated that the strains represented a distinct subclade in the clade Chloromonadinia. The secondary structure of ITS-2 supported the separation of the strains into four species. -
The Symbiotic Green Algae, Oophila (Chlamydomonadales
University of Connecticut OpenCommons@UConn Master's Theses University of Connecticut Graduate School 12-16-2016 The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Schultz University of Connecticut - Storrs, [email protected] Recommended Citation Schultz, Nikolaus, "The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History" (2016). Master's Theses. 1035. https://opencommons.uconn.edu/gs_theses/1035 This work is brought to you for free and open access by the University of Connecticut Graduate School at OpenCommons@UConn. It has been accepted for inclusion in Master's Theses by an authorized administrator of OpenCommons@UConn. For more information, please contact [email protected]. The Symbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Eduard Schultz B.A., Trinity College, 2014 A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science at the University of Connecticut 2016 Copyright by Nikolaus Eduard Schultz 2016 ii ACKNOWLEDGEMENTS This thesis was made possible through the guidance, teachings and support of numerous individuals in my life. First and foremost, Louise Lewis deserves recognition for her tremendous efforts in making this work possible. She has performed pioneering work on this algal system and is one of the preeminent phycologists of our time. She has spent hundreds of hours of her time mentoring and teaching me invaluable skills. For this and so much more, I am very appreciative and humbled to have worked with her. Thank you Louise! To my committee members, Kurt Schwenk and David Wagner, thank you for your mentorship and guidance.