NIH Public Access Policy What You Need to Know: My Bibliography NIH Public Access Policy Pubmed 2.0 My Bibliography Pubmed 2.0

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October 2019 Agenda

NIH Public Access Policy What You Need to Know: My Bibliography NIH Public Access Policy PubMed 2.0 My Bibliography PubMed 2.0

Research Performance Progress Report (RPPR)

NIH Public Access Policy

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NIH Public Access Policy: Federal Law Translation WHO? Anyone funded by the NIH The NIH Public Access Policy implements Division G, Title II, Section 218 of PL 110‐161 (Consolidated Appropriations Act, WHAT to Submit? Final, peer‐reviewed manuscript version of 2008). The law states: journal article WHERE to Submit? NIH Manuscript Submission System (NIHMS)/ PubMed Central (PMC) WHEN to Submit? Upon acceptance of publication

WHEN to Make No later than 12 months after the official date Public? of publication (embargo period) HOW to PMCID (required 90 days post‐publication) Demonstrate Compliance? 5 6

When is Compliance Required? Peer‐reviewed Journal Articles Only

The Policy applies to any publication that is: Editorials Letters to the Editor 1. Peer‐reviewed Book chapters Conference reports and/or 2. Accepted for publication in a journal on or after April 7, 2008 presentations 3. Arises from direct funding from NIH active in FY 2008 or beyond Magazine or popular press articles Preprints Compliance is required if YES to ALL Interim Research Products three criteria.

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What is Direct Funding Support? Repercussions for Non‐Compliance

Salary funded by NIH Effective as of Spring 2013, NIH is delaying processing of non‐competing continuation grant awards if works Research and/or training funded by NIH arising from that award are not in compliance. Use of a core facility funded by NIH

The award will not be processed until recipients have demonstrated compliance.

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What is the PMCID? Where to Cite the PMCID?

The PMCID is an ID number assigned to works in Applications PubMed Central. Reports Biosketches Research Performance Progress Report (RPPR) The PMCID: 1. serves as documentation of compliance with the Must include PMCID when citing applicable works that: NIH Policy. Are authored by you OR: 2. required within 90 days of the official date of Arise from your NIH‐funded research (even if you are not an author) publication by the journal.

A PMCID is required within

11 90 days post‐publication.

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Where to find the PMCID in PubMed?

Publ.t:leci.so1• Example of an embargo in PMC: ...s ��..al, u-ar1ofYedlc-o: l\nonal ns:.t..-:es o' 1--u.=h Help

Fonnat: Abstract » Send to• Full text links J Pediatr. 2019 Oct213:82�7.e2. do.: 10.1016/j.j:>eds2019.06.033. Epub 2019 Jul 11. ONA Viremia Is Associated with Hyperferritinemia in Pediatric Sepsis. Simon ow•, Halstead ES2, Davia s3, Kernan KF4, Ctaf1< RSB5, Storch G6, Carcillo JA7. Save items 9 Auttior information -tr Add to Favorites Department of Critical Care Medicine, University of Pittsburqh School of Medicine, Pittsburgh, PA; Department of Pediatrics, University of P�burgh School of Medicine, Pittsburgh, PA; Safar Center for Resuscitation Research, University of Pittsburgh School of Medicine, Pittsburqh, PA Electronic address: [email protected]. 2 Department of Pediatrics, Penn State University School of Medicine, Hershey, PA Similar articles 3 Department of Pediatrics, UT Southwestern School of Medicine, Dallas, TX. Viral DNAemia and Immune Suppression in 4 Department of Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA PediatricSepsis. [Pediatr Crlt Care Med 2018) 5 Department of Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA; Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA; Safar Center for Resuscitation Research, University of Pittsburgh School of Medicine, Reactivation of multiple viruses in patients with Pittsburqh, PA; Department of Anesthesiology, University of Pittsburgh School of Medicine, Pittsburgh, PA; Clinical and Translational Science sepsis. [PLoS One 2014)

6 1 F PMID: 31303335 PMCID: PMC6765425 [Available on 2020-10-01] DOI: 10.1016/jjReds.2019.06.033 Abstr OBJEl... 11v1:: 10 evaeaie me reiauonsmp oetween oetecnon 01 UNA viruses, rernun, ano outcomes m cnuoren wnn severe sepsis. reaction for evaluating ON.II (Clin Infect Dis 2007]

STUDY DESIGN: w eenrolled 75 pediatric patientswith severe sepsisadmitted toatertiary care children'shospital. Plasma rerrltln was See reviews measured witnin 48 hOurs or diagnosis and subsequently twice weekly. Herpes slmpiex type 1, hu man nerpesvirus 6, Epstein-Barr virus, See au cytomegalOvirus. and adenovlrus DNAemla were assessed by polymerase chain reaction. RESULTS: The incidence or DNAemia was increased significantly in patients with rerritin .:1000 ng/mL (78% vs 28%; P < .05). Patients with remt1n .:1000 ngtmL were more likely to have multiple DNA viruses detected In plasma (39% vs 4%; P < .001 ). The number or viruses Related Information detected in plasma directly correlated with the degree or hyperferrilinemia and development of combined hepatobiiiary and hematologic MedGen dysfunction aner we controtled for bacterial and fungal coinfections (P < .05) as well as increased mortality aner we controlled for severity of illness and cancer diagnosis (OR 2.6, 95% Cl 1.1-6.3, P < .05). References for this PMC Article CONCLUSIONS: Viral DNAemia was associated wrth hyperferrilinemia and adverse outcome in pediatric severe sepsis. Prospective studies are needed to determine whether hyperferrilinemia may be used to identify patients at risl< of occult DNAemia. Recent Activity Copyright C:, 2019 Elsevier Inc. All nghts reserved.

KEYWORDS: DNA viremia; hyperfernbnem1a; multiple organ dysfunction syndrome; sepsis

PMID 31303335 PMCID PMC6765425 (Available on 2020-10.-01) DOI: 101016�j � s2019 .06 033 https://www.ncbi.nlm.nih.gov/pubmed/31303335 13 14

How to Get a PMCID: Four Ways (determined by the Submission Method of the journal) Examples:

Method A: PMCID PMCID Journal submits all NIH‐funded Method A: final published articles to PMC Journal submits Method B: directly to PMC Journal submits an individual final published article to PMC Method C: Method C: Author submits Journal allows author to self‐submit a to NIHMS final, peer‐reviewed manuscript to NIHMS Method D: Method D: (NIHMS) (NIHMS) Journal submits a Journal submits final, peer‐reviewed manuscript to NIHMS to NIHMS 15 16

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NIHMS Process Overview NIH Manuscript Submission System

• AKA: NIHMS

• Processes works for posting to PMC.

• Works processed in NIHMS are Method C: PI or3rd party must deposit files and PI or author assigned an NIHMSID. must complete 2 approval tasks.

Method D: PI or author must complete 2 approval tasks. https://www.nihms.nih.gov/

https://www.nihms.nih.gov/db/sub.cgi?page=overview 18

No PMCID? Why? Recommendations for NIH Compliance Funding omitted from work. Plan ahead for compliance. Incomplete funding acknowledgements in works. Does the work meet all 3 criteria? Authors do not flag the work as requiring a submission. What method does the journal use?

Publishers fail to submit the work. Use standard funding acknowledgement and Authors fail to self‐submit the work. number.

Responsible author for NIHMS tasks is not responding to emails from Check the correct box on Copyright Agreements & NIHMS. Rights/Access Forms Retroactive compliance is time‐consuming 19 20

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Use/ Provide Funding Acknowledgement Text Check the Copyright Agreement or Rights/Access Forms

“Research reported in this publication was supported by the National Center For Advancing Translational Sciences of the National Institutes of Health under Award Number TL1TR002344. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.”

https://crtc.wustl.edu/programs/grant‐citations/ Scroll to “Grant Citation by Program” to find guidance and acknowledgement text. 22

Recommendations for NIH Compliance NIH Policy Guide

Save final, peer‐reviewed manuscripts.

Respond to emails from NIHMS.

Check My Bibliography for compliance status.

http://beckerguides.wustl.edu/nihpolicy

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My Bibliography 3.0

Research Performance Progress Report (RPPR) Updated interface, color‐coding, mobile friendly.

Officially launched May1st 2019.

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Why do we use My Bibliography? You need an NCBI Account NCBI: National Center for Biotechnology Information 1. NIH‐funded investigators are required to use it. – Populate the RPPR (Research Performance Progress Report) – Track NIH Public Access Compliance

2. To create a link to a full list of your research products that can be used on the NIH Biosketch.

Resources include PubMed, PubMed Central, My Bibliography, genomic tools, registries, databases, among others. 27 http://www.ncbi.nlm.nih.gov/ 28

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Go to: https://www.ncbi.nlm.nih.gov/account/ and Go to: https://www.ncbi.nlm.nih.gov/account/register/ select eRA Commons.

Use this option if you don’t yet have an eRA Commons Account.

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My NCBI How to get to My NCBI My NCBI is a dashboard that retains user information and database preferences to provide customized services for NCBI databases.

Two specific tools include:

My Bibliography: manage bibliography (publications)

SciENcv: online professional profile (NIH Biosketch)

My NCBI Dashboard http://www.ncbi.nlm.nih.gov/

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My NCBI Dashboard You can get to My NCBI 8 NCBI Resources 8 How To �I su1tera MY� �g!!..QyJ

from PubMed too. My NCBI Customize this �9� I NCBI Site Preferences I Video Overview I HelQ

My Bibliography x I SciENcv )(

Your bibliography contains no items. ..._... Last Update S"ianng Type .... Share your bibliography wi1h this URL: I https://www.ncbLnlm.nih.gov/myncbilamy.suiter.1JbibliQ9 Qby/publicl Biosketch-with-oers.onal- � 07-Mar-2019 Private NIH Biosketch statement user‐name Delegated Bibliographies B10Jkelch:9VtCꞏOa9f!�imit 07-Feb-2019 Private NIH Biosketch Shw,ng I1B-l2£-!J!�:Jitl!!l�::512'U!DIDI 26.Jul-20t9 PublicNIH Biosketch Rutti Lewis's b1bfi29�R!:!Y. 8 public 22-May- Bioskelch-from-eRA-Commons Private NIH Biosketch Calll�Sarlrs bibfiQ9@1LhY. 34 public 2019

Oemo-2018--02-28 05-Mar-2018 Private NIH Biosketch

NIH Fellowship 22-0ct-2018 Private Qemg-20 J§-1Q-22:fellowJt\•Q Biosketci1 Search NCBI databases x Oemo-2019-01-31 13-Feb-2019 Private NIH Biosketch

Search : I PubMe

Delegated CVs :

x �ꞏwi• Collections Wl)y�

AU bibliographies and Other citations are now in MY. Bibfiiog"@_®Y. Manage SciENcv •

Collection Name !::.'TIS SE::mgs.'S"!aring Type Favorites � 0 O Private Standard Saved Searches )( flYMlilLJY.:oubhca11ons t!l!l 289 o� PubMed Suiter edrt 6 O Publ,c PubMed PubMed Searches Test-over-1000 edrt 2601 O Publ,c PubMed 0 3 months ago 33 289 items edtt 289O Public PubMed Brownson BC!aiil!!O!l 0 5 months ago SBSR 36items edrt 36() P,ot,... PubMed

Adding a Delegate

1. Make sure that the person who is going to be the delegate has an NCBI account. How do you add or become a delegate for My Bibliography? 2. Make sure the PI has the correct email address for the delegate.

3. The PI logs into their NCBI account and goes to Account Settings.

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Add a Delegate – Get to Account Settings Add a Delegate – From PI’s Account Settings

Username

Get to Account Settings by clicking on your username.

There’s also a direct link to NCBI Account Settings: https://www.ncbi.nlm.nih.gov/account/settings/

https://www.ncbi.nlm.nih.gov/account/settings/ 37 38

Add a Delegate – From PI’s Account Settings Adding a Delegate

4. The PI finds Account Settings and clicks “Add a Delegate”.

5. The PI enters the email address for the delegate.

6. The delegate receives the email.

7. The delegate makes sure they are logged into their NCBI account. (This is a tip from Becker Library – it seems to help.)

8. The delegate clicks on the link in the email to accept their new role. 39 40

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NEW – Location change for Delegated Bibliographies

How do you add research products to My Bibliography?

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My NCBI Dashboard The quick way to tell you are linked is to look for the new icon:

New icon

You can also look at “Linked Accounts” on your NCBI account settings https://www.ncbi.nlm.nih.gov/account/settings/ 43 44

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Add from PubMed Add Citations by Uploading a File

My Bibliography AmySuiter'sBibliography

• MyNCBI I a, linked account Your bibliography is currently private. If you want to share with a URL, make y_our bibliograehy_eublic.

O Manage citations v + Add citations v T Filter citations v

From PubMed O citations, Sor

From a file Your bibliograp Manually Add PubMed Citations to My Bibliogn1phy Currently only files in MEDLINE or RIS format can be uploaded. Click on Add Cit ul ..

Iisearch term Search PubMed If you use Mendeley, Zotero or Endnote – you can export a .RIS file. This tool will help you to quickly find and add PubMed items to your My Bibliography collection. Enter your search terms in the query box, above and dick on the "Search" button to execute the If you use Google Scholar, the .RIS file is called “RefMan”. search. 46

Add Citations from Non‐PubMed Sources Manually Add Citations from Non‐PubMed Sources

Templates for Research Products

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If you add citations from a file OR manually enter them:

Citations should say manually‐entered.

Citations may be tagged as private.

And you may need to correct entries and remove duplicates. 50

Sort & Filter replaces Display

How do you navigate the new interface?

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Filter by Award

Search your My Bibliography by:

PMID PMCID Title words Author name DOI Journal title Filter by Public / Private is coming (Per NIH – September 2019) 53

NEW –Compliance Status Bar You can sort by Public Access Compliance

Icons act as filters. Order Red Blue Green Click these to display only Gray those documents.

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NEW ‐ Compliance Status Boxes NEW ‐ Compliance Status Boxes

Red = Non‐compliant. Green = Complete.

Blue = In Process. NIHMS7777777 Red = Not defined.

Gray = Not applicable ‐ Exempt.

Edit Compliance Status is the Same. NEW ‐ Blue Locks for Awards Reported

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NEW ‐Hover overblue locks to see more info

How do you get the link (URL) for your biosketch?

Reported via RPPR. Contact [email protected] for assistance.

Funding reported via NIHMS. Contact NIHMS Help Desk to remove association. 62

To get the URL: To get the URL:

1. Click the “Make your bibliography public” link. 1. Click the “Make your bibliography public” link. 2. A URL will appear. 2. A URL will appear. 3. Copy and paste the URL in its entirety. 3. Copy and paste the URL in its entirety.

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The URL also appears in the My Bibliography box on Public vs Private the My NCBI Dashboard page.

You can make the link (URL) to your My Bibliography public or private.

If the link is set to private, reviewers can’t access it.

*Remember reviewers do not see your compliance status.

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\my Suiter -C-ooge Scholar G1 X j 8 My Bibfiograp hy- My NCBIHel X I 8 My Bi b l iography - My NCBIHe X +

11/collections/mybibfiography/ NEW ‐ Public vs Private --- � \ U.S. Nat ional Lib rary of Medicine A suitera liMlr'/ National Center for Biotechnology Information

You can tag individual citations and make them private. My Bibliography AmySuiter'sBibliography so 40 2� II Bibliographies v

4M y NCBI S linked account Page GJ of 1 Share your bibliography with this u RL: https://www ncbi,nlm nib gQillny:ncbj/amy: sujter 1/bjbljograpbyJRJ,LlilicL If a citation is set to private, it will not display when Make bibUogrof2hy_f2!iyQif

Search citations your My Bibliography link is clicked. O Manage citations v + Add citations v T Filter citations v (Reviewers will not see the citations tagged as private.) Manage awards clear all 11 citations, So r t b y r�<:��''""'!!L �pdated v Copy to collection elter CW, Chambers T, Chan L, Holmes KL, Lu YL, Palmer LA, Public Access Compliance , Suiter AM, Wheeler TR. Research evaluation support Delete citations Complete. PMCID: PMC5764574 raries. J Med Libr Assoc. 2018 Jan;l06(1):1-14. doi: pub 2018 Jan 2. PubMecl PMID: 29339930; PubMed Central If a citation is set to private AND it has your funding Export file (MEDLINE) + Add Award award associated with it, it should display in the RPPR Compliance report {PDF) ction in a cyclical environment: possible impact of Set to public Public Access Compliance nian fitness. J Mol Evol. 2005 Aug;61(2):153-70. doi: system. (You can still report it). Not applicableꞏ Exempted. [.E.d.i1 -9. Epub 2005 Aug 2. PubMed PMID: 16132472. Set to private Smtu.s)

+ Add Award I

*If you are the PI of a training grant or other award where you must report rJ Engeszer R, Sarli C, Suiter A. Pushing the envelope: A program for illustrating research Public Access Compliance productivity and impact narratives. 2015; publications that you did not author, you may want to take advantage of Not applicable (Edit Status] I this feature. 67 +Add Award -' Edit citation

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Resources

NCBI Help Manual: Chapter on My Bibliography https://www.ncbi.nlm.nih.gov/books/NBK53595/

69 http://beckerguides.wustl.edu/authors/mybibncbi 70

PubMed 2.0 Key Changes

Soft launch expected October 2019. Paging function Expected to be the default interface in January 2020. Both current PubMed and new interface will be Sidebar navigation available for transition period. Cite feature

Want a sneak peek? Try it out at PubMed Labs: Easier to share via social media or permalink https://www.ncbi.nlm.nih.gov/labs/pubmed/ Improved mobile experience

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Note that PMCID will be at the top Search results I Save 11lEmail [J

Review > Eur Arch Otorhinolaryngol, 274 (5), 2079-2091 May 2017 FULL TEXT LINKS A Multidisciplinary Systematic Review of the Treatment for Chronic Idiopathic Tinnitus ACTIONS

Hans-Peter Zenner, Wolf gang Delb ... Be rthold Langguth + expand "Cite PM ID: 27995315DOI: 10.1007/s00405-016 -4401- y

Abstract SHARE The majority of tinnitus patients are affected by chronic idiopathic tinnitus, and almost 60 different treatment modalities have been reported. The present study is a multidisciplinary systematic analysis of the evidence for the different forms of treatment for chronic tinnitus. The results are used to form OOfl the basis of an S3 guideline. A systematic search was carried out in PubMed and the Cochrane Library. PAGE NAVIGATION The basis for presenting the level of evidence was the evidence classification of the Oxford Centre of Evidence-based Medicine. Whenever available, randomised controlled trials were given preference for Title & authors J therapeutic issues. All systematic reviews and meta-analyses were assessed for their < of NEXT RESULT PR1 EV80R,ES1ULT0 Ioqr.caI qua1ꞏit y , and effect si.ze wastaken .into account.Ast he need for pat i.ent counse11ꞏ1ng .rs > 3 of 8,010 < _-ꞏꞏ _.. -nt, specif ic tinnit uscounselling shouldbeperformed.Due tothe high level ofevidence, Abstract validated tinnitus-specific, cognitive behavioural therapy is strongly recommended. In addition, � Feedback ''r c: ...... :1 ...... +-:,..1 ......

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What Questions Do You Have?

Cathy Sarli: [email protected] Amy Suiter: [email protected]

https://becker.wustl.edu/newsletter/

As of September 2019, PubMed Labs is now connected to My Bibliography. 75