3043.Full-Text.Pdf

Total Page:16

File Type:pdf, Size:1020Kb

3043.Full-Text.Pdf [CANCER RESEARCH 63, 3043–3048, June 15, 2003] Advances in Brief Involvement of PEG10 in Human Hepatocellular Carcinogenesis through Interaction with SIAH11 Hiroshi Okabe, Seiji Satoh, Yoichi Furukawa, Tatsushi Kato, Suguru Hasegawa, Yumi Nakajima, Yoshio Yamaoka, and Yusuke Nakamura2 Laboratory of Molecular Medicine, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8639 [H. O., S. S., Y. F., T. K., S. H., Y. Nakaj., Y. Nakam.], and Department of Gastroenterological Surgery, Graduate School of Medicine, Kyoto University, Kyoto 606-8507 [H. O., S. S., T. K., Y. Y.], Japan Abstract certain HCC cell lines that did not manifest endogenous expression of this gene. In addition, we demonstrated interaction of PEG10 protein Through a genome-wide cDNA microarray, we identified that the with SIAH proteins, which play important roles in apoptosis. Our data paternally expressed gene 10 (PEG10) was highly expressed in a great raise novel insights into mechanisms of hepatocarcinogenesis and majority of hepatocellular carcinomas, although its expression was absent in normal liver cells. Exogenous expression of PEG10 conferred oncogenic suggest that PEG10 might serve as a novel molecular target for activity and transfection of hepatoma cells with antisense S-oligonucleo- treatment of HCCs. tides suppressing PEG10 resulted in their growth inhibition. Additional Materials and Methods experiments revealed that PEG10 protein associated with SIAH1, a me- diator of apoptosis, and that overexpression of PEG10 decreased the cell Cell Lines and Tissue Specimens. HEK293 cells and human hepatoma death mediated by SIAH1. These findings suggested that development of cell lines HepG2, Huh7 and Alexander were obtained from the American Type drug(s) inhibiting PEG10 activity could be a novel approach for the Culture Collection (Manassas, VA). SNU423, SNU449, and SNU475 were treatment of hepatocellular carcinomas. obtained from the Korea cell line bank. All cell lines were grown in mono- Introduction layers in appropriate media supplemented with 10% fetal bovine serum and 1% antibiotic/antimycotic solution (Sigma, St. Louis, MO) and maintained at 37°C 3 HCC is one of the most common malignancies worldwide. Al- in air containing 5% CO2. All HCCs and corresponding noncancerous liver though several novel therapeutic modalities have been developed in tissues were obtained with informed consent from patients who underwent recent years, prognosis of advanced HCC remains poor. Molecular hepatectomy. RT-PCR. RT-PCR experiments were carried out in 20-␮l volumes of PCR investigations have disclosed involvement of alterations of TP53, buffer (TaKaRa, Tokyo, Japan), with 4 min at 94°C for denaturing followed by CTNNB1, and AXIN1 in hepatocarcinogenesis (1–3) but only in a 20 (for GAPDH) or 30 (for PEG10 and SIAH1) cycles of 94°C for 30 s, 56°C limited fraction of HCCs. Thus, discovery of new target molecules for 30 s, and 72°C for 30 s in the GeneAmp PCR system 9700 (Perkin-Elmer, that are critically involved in a majority of cases and expressed Foster City, CA). Primer sequences were as follows: for GAPDH, forward specifically in tumors will be essential for improving therapeutic 5Ј-ACAACAGCCTCAAGATCATCAG-3Ј and reverse 5Ј-GGTCCACCACT- intervention and prognosis of hepatic cancers. GACACGTTG-3Ј; for PEG10, forward 5Ј-AACAACAACAACAACTC- Microarray technologies have enabled researchers to obtain com- CAAGC-3Ј and reverse 5Ј-TCTGCACCTGGCTCTGCAG-3Ј; and for SIAH1, prehensive data about gene expression, not only in experimental forward 5Ј-TCCAACAATGACTTGGCGAGT-3Ј and reverse 5Ј-CTTTT- models but also in human cancers (4, 5). In a previous report (6), we TCTGTGTGTGGCAGAG-3Ј. compared expression profiles of 20 HCCs with their corresponding Northern Blot Analysis. Human multiple tissue blots (Clontech, Palo Alto, CA) were hybridized with a 32P-labeled PEG10 cDNA. Prehybridization, noncancerous liver tissues using a cDNA microarray consisting of hybridization, and washing were performed according to the supplier’s rec- 23,040 genes. Those experiments disclosed a number of genes that ommendations. The blots were autoradiographed with intensifying screens at appeared to be involved in hepatocarcinogenesis and revealed more- Ϫ80°C for 24 h. over that expression profiles were different between hepatitis B virus- Immunoblotting. The polyclonal antibody to PEG10 was purified from positive and hepatitis C virus-positive HCCs. sera of immunized rabbits with recombinant GST-PEG10 protein produced in To identify ideal therapeutic targets, we chose to investigate genes Escherichia coli. Cell extracts were prepared using lysis buffer [150 mM NaCl, that were commonly and exclusively up-regulated in HCCs, using 1% Triton X-100, 50 mM Tris-HCl (pH 7.4), and 1 mM DTT, with complete data obtained from the microarray. In the work reported here, we Protease Inhibitor Cocktail (Boehringer Mannheim, Mannheim, Germany). isolated the entire transcript of a gene that was selectively expressed Proteins were separated by 10% SDS-PAGE and immunoblotted with the in cancerous tissues. This gene was eventually found to be identical to rabbit anti-PEG10 antibody. Horseradish peroxidase-conjugated goat antirab- bit IgG (Santa Cruz Biotechnology, Santa Cruz, CA) served as the secondary PEG10 (7). Exogenous expression of PEG10 promoted growth of antibody for the ECL Detection System (Amersham Pharmacia Biotech, Pis- cataway, NJ). Received 9/3/02; accepted 5/1/03. Immunohistochemical Staining. Cultured cells on chamber slides were The costs of publication of this article were defrayed in part by the payment of page fixed with PBS containing 4% paraformaldehyde for 15 min, then rendered charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. permeable with PBS containing 0.1% Triton X-100 for 2.5 min at room 1 This work was supported by “Research for the Future” Program Grant 00L01402 temperature. Frozen sections from primary HCCs and noncancerous liver from the Japan Society for the Promotion of Science. tissue were fixed with acetone for 15 min. The cells were incubated with 2% 2 To whom requests for reprints should be addressed, at Laboratory of Molecular BSA in PBS for 24 h at 4°C and hybridized with the anti-PEG10 antibody. Medicine, Human Genome Center, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan. Phone: 81-3-5449-5372; Fax: Antibodies were stained with fluorescent substrate-conjugated antirabbit sec- 81-3-5449-5433; E-mail: [email protected]. ondary antibody (ICN Pharmaceuticals, Costa Mesa, CA). Nuclei were coun- 3 The abbreviations used are: HCC, hepatocellular carcinoma; HEK293, human em- terstained with 4Ј,6-diamidino-2-phenylindole. Fluorescent images were ob- bryonic kidney 293; PEG10, the paternally expressed gene 10; GST, glutathione S- tained with an Eclipse E800 microscope (Nikon, Tokyo, Japan). transferase; RT-PCR, reverse transcription-PCR; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; MOI, multiplicity of infection; MTT, 3-(4,5-dimethylthiazol-2-yl)-2,5- Colony Formation Assay and Growth Suppression Assay. Cells trans- diphenyltetrazolium bromide. fected with plasmid vector expressing the entire coding region of PEG10 3043 Downloaded from cancerres.aacrjournals.org on October 1, 2021. © 2003 American Association for Cancer Research. INVOLVEMENT OF PEG10 IN HEPATOCARCINOGENESIS Fig. 1. Expression of PEG10 in adult human tissues and primary HCCs. A, multiple tissue Northern blot analysis of PEG10 in adult human tissues. B, gene and protein expression of PEG10 in six hepatoma cell lines. RT-PCR was carried out using a PEG10-specific PCR primer set (top panel). GAPDH served as an internal control. Immunoblotting was performed using anti-PEG10 antibody. The amount of protein applied in the SDS-PAGE was evaluated by the Coomassie Brilliant Blue (CBB) staining. C, subcellular localization of PEG10 protein in HCC cell lines (magnification, ϫ600). D, immunohistochemical staining of PEG10 in a primary HCC and the corresponding noncancerous liver tissue. (magnification, ϫ600). using FuGENE6 reagent according to the supplier’s protocol (Boehringer were analyzed by immunoblotting using anti-His probe antibody (Santa Mannheim) were cultured with an appropriate concentration of geneticin Cruz Biotechnology) or anti-PEG10 antibody. Similarly, GST or GST- for 2 weeks, fixed with 100% methanol, and stained by Giemsa solution. PEG10 fusion protein, immobilized on Glutathione Sepharose 4B beads Colonies Ͼ 1 mm were counted 2 weeks after transfection of pcDNA (Amersham Pharmacia Biotech, Uppsala, Sweden), was incubated with 3.1(ϩ), pcDNA 3.1(Ϫ)/PEG10, or pcDNA 3.1(ϩ)/PEG10. Cells trans- lysates from HEK293-SIAH2 cells overexpressing Flag-tagged SIAH2. fected with sense (5Ј-CCTCGCGTGGTGAGTA-3Ј) or antisense (5Ј- Bound proteins were eluted with elution buffer [120 mM NaCl, 50 mM TACTCACCACGCGAGG-3Ј) S-oligonucleotides of PEG10 were stained Tris-HCl (pH 8.0), and 20 mM glutathione (Sigma)] and analyzed by in the same manner. immunoblotting using anti-Flag (Sigma) and anti-PEG10 antibody. Flow Cytometry. A total of 1 ϫ 105 cells was collected by trypsinization Construction of Adenovirus Expressing SIAH1. Generation and prepa- at the given time points and fixed in 70% cold ethanol. Cells treated with ration of adenovirus-expressing SIAH1 was achieved using the Adenovirus RNase and propidium iodide (50 ␮g/ml) in PBS were analyzed by a FACScan Expression Vector Kit (TaKaRa) according to the supplier’s protocol. First, the (Becton Dickinson, San Jose, CA). entire coding region of SIAH1 was amplified and cloned into an appropriate Yeast Two-Hybrid Experiment. A yeast two-hybrid assay was performed site of the pcDNA3.1/myc-C vector (Invitrogen). Subsequently, the fragment with the Matchmaker GAL4 Two-Hybrid System 3 according to the manu- of myc-tagged SIAH1 was cloned into the cosmid vector pAxCAwt supplied in facturer’s protocols (Clontech). We cloned the entire coding sequence of the kit. (TaKaRa). PEG10 into the EcoRI-SalI site of pAS2-1 vector as bait and screened a human testis cDNA library (Clontech).
Recommended publications
  • Consequences of Mitotic Loss of Heterozygosity on Genomic Imprinting in Mouse Embryonic Stem Cells
    CONSEQUENCES OF MITOTIC LOSS OF HETEROZYGOSITY ON GENOMIC IMPRINTING IN MOUSE EMBRYONIC STEM CELLS by RACHEL LEIGH ELVES B.Sc., University of British Columbia, 2004 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIRMENTS FOR THE DEGREE OF MASTER OF SCIENCE in THE FACULTY OF GRADUATE STUDIES (Medical Genetics) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) August 2008 © Rachel Leigh Elves, 2008 Abstract Epigenetic differences between maternally inherited and paternally inherited chromosomes, such as CpG methylation, render the maternal and paternal genome functionally inequivalent, a phenomenon called genomic imprinting. This functional inequivalence is exemplified with imprinted genes, whose expression is parent-of-origin specific. The dosage of imprinted gene expression is disrupted in cells with uniparental disomy (UPD), which is an unequal parental contribution to the genome. I have derived mouse embryonic stem (ES) cell sub-lines with maternal UPD (mUPD) for mouse chromosome 6 (MMU6) to characterize regulation and maintenance of imprinted gene expression. The main finding from this study is that maintenance of imprinting in mitotic UPD is extremely variable. Imprint maintenance was shown to vary from gene to gene, and to vary between ES cell lines depending on the mechanism of loss of heterozygosity (LOH) in that cell line. Certain genes analyzed, such as Peg10 , Sgce , Peg1 , and Mit1 showed abnormal expression in ES cell lines for which they were mUPD. These abnormal expression levels are similar to that observed in ES cells with meiotically-derived full genome mUPD (parthenogenetic ES cells). Imprinted CpG methylation at the Peg1 promoter was found to be abnormal in all sub-lines with mUPD for Peg1 .
    [Show full text]
  • Critical Function of Siah2 in Tumorigenesis
    AIMS Molecular Science, 4(4): 415-423 DOI: 10.3934/molsci.2017.4.415 Received 31 July 2017, Accepted 21 September 2017, Published 11 October 2017 http://www.aimspress.com/journal/Molecular Review Critical function of Siah2 in tumorigenesis Kazunobu Baba, Tadaaki Miyazaki* Department of Probiotics Immunology, Institute for Genetic Medicine, Hokkaido University, North 15 West 7, Kita-ku, Sapporo City, Hokkaido, Japan * Correspondence: Email: [email protected]; Tel: 81-011-706-8095. Abstract: The seven in absentia homolog (Siah) family proteins are components of E3 RING zinc finger ubiquitin ligase complexes that catalyze the ubiquitination of proteins. Siah proteins target their substrates for proteasomal degradation. Evidence is growing that Siah proteins are implicated in the progression of various cancer cells and play a critical role in angiogenesis and tumorigenesis, particularly through Ras, p53, estrogen, and hypoxia inducible factor (HIF)-mediated signaling pathways in response to DNA damage or hypoxia. Keywords: Siah2; Nrf2; ROS metabolism; Hypoxia 1. Introduction The seven in absentia (Sina) gene was initially identified to be critical for photoreceptor cell development in Drosophila [1]. As its mammalian orthologs, murine and human homologs of the Sina gene have also been identified. In Xenopus and mice, Sina homologs (Siahs) were isolated as three Siah proteins, Siah1a, Siah1b, and Siah2, which are encoded by different genes [2]. In contrast, the human Siah proteins consist of two homologs, Siah1 and Siah2, which are encoded by the SIAH1 and SIAH2 genes, respectively [3]. Siah1 and Siah2 have the high sequence similarity of their N-terminal RING finger domain, central cysteine-rich domain, and C-terminal substrate binding domain (SBD); however, Siah1 and Siah2 apparently have distinct but overlapping functions as proteins of a tumor suppressor gene and a proto-oncogene, respectively (Figure 1) [4].
    [Show full text]
  • Supplementary Materials
    Supplementary materials Supplementary Table S1: MGNC compound library Ingredien Molecule Caco- Mol ID MW AlogP OB (%) BBB DL FASA- HL t Name Name 2 shengdi MOL012254 campesterol 400.8 7.63 37.58 1.34 0.98 0.7 0.21 20.2 shengdi MOL000519 coniferin 314.4 3.16 31.11 0.42 -0.2 0.3 0.27 74.6 beta- shengdi MOL000359 414.8 8.08 36.91 1.32 0.99 0.8 0.23 20.2 sitosterol pachymic shengdi MOL000289 528.9 6.54 33.63 0.1 -0.6 0.8 0 9.27 acid Poricoic acid shengdi MOL000291 484.7 5.64 30.52 -0.08 -0.9 0.8 0 8.67 B Chrysanthem shengdi MOL004492 585 8.24 38.72 0.51 -1 0.6 0.3 17.5 axanthin 20- shengdi MOL011455 Hexadecano 418.6 1.91 32.7 -0.24 -0.4 0.7 0.29 104 ylingenol huanglian MOL001454 berberine 336.4 3.45 36.86 1.24 0.57 0.8 0.19 6.57 huanglian MOL013352 Obacunone 454.6 2.68 43.29 0.01 -0.4 0.8 0.31 -13 huanglian MOL002894 berberrubine 322.4 3.2 35.74 1.07 0.17 0.7 0.24 6.46 huanglian MOL002897 epiberberine 336.4 3.45 43.09 1.17 0.4 0.8 0.19 6.1 huanglian MOL002903 (R)-Canadine 339.4 3.4 55.37 1.04 0.57 0.8 0.2 6.41 huanglian MOL002904 Berlambine 351.4 2.49 36.68 0.97 0.17 0.8 0.28 7.33 Corchorosid huanglian MOL002907 404.6 1.34 105 -0.91 -1.3 0.8 0.29 6.68 e A_qt Magnogrand huanglian MOL000622 266.4 1.18 63.71 0.02 -0.2 0.2 0.3 3.17 iolide huanglian MOL000762 Palmidin A 510.5 4.52 35.36 -0.38 -1.5 0.7 0.39 33.2 huanglian MOL000785 palmatine 352.4 3.65 64.6 1.33 0.37 0.7 0.13 2.25 huanglian MOL000098 quercetin 302.3 1.5 46.43 0.05 -0.8 0.3 0.38 14.4 huanglian MOL001458 coptisine 320.3 3.25 30.67 1.21 0.32 0.9 0.26 9.33 huanglian MOL002668 Worenine
    [Show full text]
  • The Abundance of Cis-Acting Loci Leading to Differential Allele
    Yeo et al. BMC Genomics (2016) 17:620 DOI 10.1186/s12864-016-2922-9 RESEARCH ARTICLE Open Access The abundance of cis-acting loci leading to differential allele expression in F1 mice and their relationship to loci harboring genes affecting complex traits Seungeun Yeo1, Colin A. Hodgkinson1, Zhifeng Zhou1, Jeesun Jung2, Ming Leung1, Qiaoping Yuan1 and David Goldman1* Abstract Background: Genome-wide surveys have detected cis-acting quantitative trait loci altering levels of RNA transcripts (RNA-eQTLs) by associating SNV alleles to transcript levels. However, the sensitivity and specificity of detection of cis- expression quantitative trait loci (eQTLs) by genetic approaches, reliant as it is on measurements of transcript levels in recombinant inbred strains or offspring from arranged crosses, is unknown, as is their relationship to QTL’s for complex phenotypes. Results: We used transcriptome-wide differential allele expression (DAE) to detect cis-eQTLs in forebrain and kidney from reciprocal crosses between three mouse inbred strains, 129S1/SvlmJ, DBA/2J, and CAST/EiJ and C57BL/6 J. Two of these crosses were previously characterized for cis-eQTLs and QTLs for various complex phenotypes by genetic analysis of recombinant inbred (RI) strains. 5.4 %, 1.9 % and 1.5 % of genes assayed in forebrain of B6/ 129SF1, B6/DBAF1, and B6/CASTF1 mice, respectively, showed differential allelic expression, indicative of cis-acting alleles at these genes. Moreover, the majority of DAE QTLs were observed to be tissue-specific with only a small fraction showing cis-effects in both tissues. Comparing DAE QTLs in F1 mice to cis-eQTLs previously mapped in RI strains we observed that many of the cis-eQTLs were not confirmed by DAE.
    [Show full text]
  • Siah - a Promising Anti-Cancer Target
    Author Manuscript Published OnlineFirst on March 1, 2013; DOI: 10.1158/0008-5472.CAN-12-4348 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Siah - a promising anti-cancer target Christina SF Wong1 and Andreas Möller1 1 Tumour Microenvironment Laboratory, Queensland Institute of Medical Research, 300 Herston Road, Herston, Queensland 4006, Australia. Corresponding Author: Andreas Möller ([email protected]) Running title: Siah and Cancer Keywords: Siah1, Siah2, E3 Ubiquitin ligases, Cancer Potential conflict of interest: The authors declare no conflict of interest. Word count: Abstract: 100 words; Text: 2590 words; Number of Figures: 1; Number of Tables: 1 1 Downloaded from cancerres.aacrjournals.org on September 29, 2021. © 2013 American Association for Cancer Research. Author Manuscript Published OnlineFirst on March 1, 2013; DOI: 10.1158/0008-5472.CAN-12-4348 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Abstract: Siah ubiquitin ligases play important roles in a number of signaling pathways involved in the progression and spread of cancer in cell-based models but their role in tumor progression remains controversial. Siah proteins have been described to be both oncogenic as well as tumor-suppressive in a variety of patient cohort studies and animal cancer models. This review collates the current knowledge of Siah in cancer progression and identifies potential methods of translation of these findings into the clinic. Furthermore, key experiments needed to close the gaps in our understanding of the role Siah proteins play in tumor progression are suggested. 2 Downloaded from cancerres.aacrjournals.org on September 29, 2021.
    [Show full text]
  • Functional Study of the Retrotransposon-Derived Human PEG10 Protease
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by University of Debrecen Electronic Archive Article Functional Study of the Retrotransposon-Derived Human PEG10 Protease Mária Golda 1,2, János András Mótyán 1,*, Mohamed Mahdi 1 and József Tőzsér 1,* 1 Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary; [email protected] (M.G.); [email protected] (M.M.) 2 Doctoral School of Molecular Cell and Immune Biology, University of Debrecen, 4032 Debrecen, Hungary * Correspondence: [email protected] (J.A.M.); [email protected] (J.T.) Received: 5 March 2020; Accepted: 30 March 2020; Published: 31 March 2020 Abstract: Paternally expressed gene 10 (PEG10) is a human retrotransposon-derived imprinted gene. The mRNA of PEG10 encodes two protein isoforms: the Gag-like protein (RF1PEG10) is coded by reading frame 1, while the Gag-Pol-like polyprotein (RF1/RF2PEG10) is coded by reading frames 1 and 2. The proteins are translated by a typical retroviral frameshift mechanism. The protease (PR) domain of RF2PEG10 contains an -Asp-Ser-Gly- sequence, which corresponds to the consensus -Asp- Ser/Thr-Gly- active-site motif of retroviral aspartic proteases. The function of the aspartic protease domain of RF2PEG10 remains unclear. To elucidate the function of PEG10 protease (PRPEG10), we designed a frameshift mutant (fsRF1/RF2PEG10) for comparison with the RF1/RF2PEG10 form. To study the effects of PRPEG10 on cellular proliferation and viability, mammalian HEK293T and HaCaT cells were transfected with plasmids coding for either RF1/RF2PEG10, the frameshift mutant (fsRF1/RF2PEG10), or a PR active-site (D370A) mutant fsRF1/RF2PEG10.
    [Show full text]
  • Detailed Characterization of Human Induced Pluripotent Stem Cells Manufactured for Therapeutic Applications
    Stem Cell Rev and Rep DOI 10.1007/s12015-016-9662-8 Detailed Characterization of Human Induced Pluripotent Stem Cells Manufactured for Therapeutic Applications Behnam Ahmadian Baghbaderani 1 & Adhikarla Syama2 & Renuka Sivapatham3 & Ying Pei4 & Odity Mukherjee2 & Thomas Fellner1 & Xianmin Zeng3,4 & Mahendra S. Rao5,6 # The Author(s) 2016. This article is published with open access at Springerlink.com Abstract We have recently described manufacturing of hu- help determine which set of tests will be most useful in mon- man induced pluripotent stem cells (iPSC) master cell banks itoring the cells and establishing criteria for discarding a line. (MCB) generated by a clinically compliant process using cord blood as a starting material (Baghbaderani et al. in Stem Cell Keywords Induced pluripotent stem cells . Embryonic stem Reports, 5(4), 647–659, 2015). In this manuscript, we de- cells . Manufacturing . cGMP . Consent . Markers scribe the detailed characterization of the two iPSC clones generated using this process, including whole genome se- quencing (WGS), microarray, and comparative genomic hy- Introduction bridization (aCGH) single nucleotide polymorphism (SNP) analysis. We compare their profiles with a proposed calibra- Induced pluripotent stem cells (iPSCs) are akin to embryonic tion material and with a reporter subclone and lines made by a stem cells (ESC) [2] in their developmental potential, but dif- similar process from different donors. We believe that iPSCs fer from ESC in the starting cell used and the requirement of a are likely to be used to make multiple clinical products. We set of proteins to induce pluripotency [3]. Although function- further believe that the lines used as input material will be used ally identical, iPSCs may differ from ESC in subtle ways, at different sites and, given their immortal status, will be used including in their epigenetic profile, exposure to the environ- for many years or even decades.
    [Show full text]
  • SIAH2-Mediated and Organ-Specific Restriction of HO-1 Expression by A
    www.nature.com/scientificreports OPEN SIAH2-mediated and organ-specifc restriction of HO-1 expression by a dual mechanism Shashipavan Chillappagari1*, Ratnal Belapurkar1, Andreas Möller2, Nicole Molenda3, Michael Kracht4, Susanne Rohrbach3 & M. Lienhard Schmitz1* The intracellular levels of the cytoprotective enzyme heme oxygenase-1 (HO-1) are tightly controlled. Here, we reveal a novel mechanism preventing the exaggerated expression of HO-1. The analysis of mice with a knock-out in the ubiquitin E3 ligase seven in absentia homolog 2 (SIAH2) showed elevated HO-1 protein levels in specifc organs such as heart, kidney and skeletal muscle. Increased HO-1 protein amounts were also seen in human cells deleted for the SIAH2 gene. The higher HO-1 levels are not only due to an increased protein stability but also to elevated expression of the HO-1 encoding HMOX1 gene, which depends on the transcription factor nuclear factor E2-related factor 2 (NRF2), a known SIAH2 target. Dependent on its RING (really interesting new gene) domain, expression of SIAH2 mediates proteasome-dependent degradation of its interaction partner HO-1. Additionally SIAH2-defcient cells are also characterized by reduced expression levels of glutathione peroxidase 4 (GPX4), rendering the knock-out cells more sensitive to ferroptosis. Ubiquitin E3 ligases regulate the activity and turnover of many target proteins, thus controlling key features such as metabolism, stress signaling and cell cycle progression1. Te RING family of ubiquitin E3 ligases comprises the SIAH family. Te human genome encodes SIAH1 and the homologous SIAH2 protein as well as SIAH3, which lacks a functional RING domain and is only expressed in a limited subset of cancer cell lines2.
    [Show full text]
  • Identification of Key Genes and Pathways for Alzheimer's Disease
    Biophys Rep 2019, 5(2):98–109 https://doi.org/10.1007/s41048-019-0086-2 Biophysics Reports RESEARCH ARTICLE Identification of key genes and pathways for Alzheimer’s disease via combined analysis of genome-wide expression profiling in the hippocampus Mengsi Wu1,2, Kechi Fang1, Weixiao Wang1,2, Wei Lin1,2, Liyuan Guo1,2&, Jing Wang1,2& 1 CAS Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing 100101, China 2 Department of Psychology, University of Chinese Academy of Sciences, Beijing 10049, China Received: 8 August 2018 / Accepted: 17 January 2019 / Published online: 20 April 2019 Abstract In this study, combined analysis of expression profiling in the hippocampus of 76 patients with Alz- heimer’s disease (AD) and 40 healthy controls was performed. The effects of covariates (including age, gender, postmortem interval, and batch effect) were controlled, and differentially expressed genes (DEGs) were identified using a linear mixed-effects model. To explore the biological processes, func- tional pathway enrichment and protein–protein interaction (PPI) network analyses were performed on the DEGs. The extended genes with PPI to the DEGs were obtained. Finally, the DEGs and the extended genes were ranked using the convergent functional genomics method. Eighty DEGs with q \ 0.1, including 67 downregulated and 13 upregulated genes, were identified. In the pathway enrichment analysis, the 80 DEGs were significantly enriched in one Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, GABAergic synapses, and 22 Gene Ontology terms. These genes were mainly involved in neuron, synaptic signaling and transmission, and vesicle metabolism. These processes are all linked to the pathological features of AD, demonstrating that the GABAergic system, neurons, and synaptic function might be affected in AD.
    [Show full text]
  • SIAH2 Antibody
    Efficient Professional Protein and Antibody Platforms SIAH2 Antibody Basic information: Catalog No.: UPA61750 Source: Rabbit Size: 50ul/100ul Clonality: polyclonal Concentration: 1mg/ml Isotype: Rabbit IgG Purification: affinity purified by Protein A Useful Information: Applications: WB:1:500-2000 Reactivity: Human, Mouse, Rat, Chicken, Dog, Pig, Cow, Horse, Rabbit Specificity: This antibody recognizes SIAH2 protein. Immunogen: KLH conjugated synthetic peptide derived from human SIAH2 201-300/324 E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioe- ster and then directly transfers the ubiquitin to targeted substrates. Medi- ates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 com- plexes. Triggers the ubiquitin-mediated degradation of many substrates, in- Description: cluding proteins involved in transcription regulation (POU2AF1, PML, NCOR1), a cell surface receptor (DCC), an antiapoptotic protein (BAG1), and a protein involved in synaptic vesicle function in neurons (SYP). Mediates ubiquitination and proteasomal degradation of DYRK2 in response to hy- poxia. It is thereby involved in apoptosis, tumor suppression, cell cycle, transcription and signaling processes. Has some overlapping function with SIAH1. Triggers the ubiquitin-mediated degradation of TRAF2, whereas SI- AH1 can not. Promotes monoubiquitination of SNCA. Uniprot: O43255 Human BiowMW: 35 KDa Buffer: 0.01M TBS(pH7.4) with 1% BSA, 0.03% Proclin300 and 50% Glycerol. Storage: Store at 4°C short term and -20°C long term. Avoid freeze-thaw cycles. Note: For research use only, not for use in diagnostic procedure.
    [Show full text]
  • Expression and Purification of the Predicted PEG10 Aspartyl Protease
    Expression and purification of the predicted PEG10 aspartyl protease domain Caillan Crowe-McAuliffe A thesis submitted for the degree of Master of Science Department of Biochemistry University of Otago, Dunedin, New Zealand. April 2013 Abstract Paternally Expressed Gene 10 (PEG10) is an imprinted, retrotransposon-derived gene found in mammals. Although many of the retrotransposon domains have become de- generated in PEG10, a predicted retroviral-type aspartyl protease (AP) domain has been highly conserved. Retroviral-type APs play a crucial role in the replication of some retroviruses such as the Human Immunodeficiency Virus (HIV) and are there- fore important drug targets. Consequently, extensive biochemical and structural data are available for this class of proteins, although the vast majority of this has been gath- ered from only a small number of retroviral enzymes. Preliminary evidence indicates that the PEG10 AP is an active protease, although proteolysis by this enzyme has yet to be observed in vitro (Clark et al., 2007). This study aimed to express, purify, and characterise the predicted PEG10 AP. A number of PEG10 AP clones, each with different termini and across more than one recombinant expression system, were expressed to produce the PEG10 AP domain in E. coli. The majority of expressed proteins were largely insoluble and unsuitable for further characterisation. One clone, however, produced soluble PEG10 AP in sufficient quantities for purification and further analysis. Several lines of evidence indicated that the purified protein was dimeric in solution, consistent with the quaternary structure of other retroviral-type APs. The results presented in this thesis support the hypothesis that the PEG10 AP is active and has retained characteristics from the ancestral retrotransposon enzyme.
    [Show full text]
  • Monoclonal Anti-Siah2 Antibody Produced in Mouse
    Monoclonal Anti-Siah2 Clone Siah2-369 Purified Mouse Immunoglobulin Product Number S 7945 Product Description functions. Siah2 was implicated in the regulation of key Monoclonal Anti-Siah2 (mouse IgG1 isotype) is derived proteins in the immune system such as TRAF, Vav1, from the hybridoma Siah2-369 produced by the fusion of and OBF-1. Knockout mice of Siah1a exhibit severe mouse myeloma cells (NS1 cell) and splenocytes from growth retardation, early lethality and exhibit a block in BALB/c mice immunized with a synthetic peptide meiotic cell division during meiosis I of spermato- corresponding to amino acids 2-17 of human Siah2, genesis. However, knockout mice of Siah2 are largely conjugated to KLH. The isotype is determined using a phenotypically normal.4 Siah1a and Siah2 are important double diffusion immunoassay using Mouse Monoclonal for the regulation of the PHD enzymes (prolylhydrox- Antibody Isotyping Reagents (Sigma ISO-2). ylases) that are responsible for the prolyhydroxylation of HIF a protein under hypoxia conditions.5 Monoclonal Anti-Siah2 recognizes human, monkey, bovine, canine, hamster, and mouse Siah2 (~37 kDa). Reagent The antibody can be used in ELISA, immunocyto- The antibody is supplied as a solution in 0.01 M phos- chemistry, and immunoblotting. phate buffered saline, pH 7.4, containing 15 mM sodium azide. Ubiquitination of proteins is an important process in the pathway leading to their degradation through the Antibody Concentration: ~2 mg/mL proteasome. The Siah (Seven in absentia homologue) protein family belongs to the E3 ubiquitin ligase protein Precautions and Disclaimer family. These proteins can mediate E3 ubiquitin ligase Due to the sodium azide content, a material safety data activity either by direct binding to protein targets or by sheet (MSDS) for this product has been sent to the functioning as the essential RING domain subunit of attention of the safety officer of your institution.
    [Show full text]