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1 Holocene carbon dynamics at the forest – steppe ecotone of southern

2

3 Running head: Holocene carbon dynamics in southern Siberia

4

5 1Mackay, A.W*., 2Seddon, A.W.R., 3,4Leng, M.J., 5Heumann, G., 1Morley, D.W.,

6 6Piotrowska, N., 7Rioual, P., 8Roberts, S., 8Swann, G.E.A.

7

8 1: *Environmental Change Research Centre, Department of Geography, UCL, London

9 UK, WC1E 6BT.

10 Tel: +44 (0)20 7679 0558; Fax: +44 (0)20 7679 0565; email: [email protected]

11

12 2: Department of Biology, University of Bergen, PO Box 7803, Bergen N5020, Norway

13

14 3: NERC Isotope Geosciences Facilities, British Geological Survey, Nottingham NG12

15 5GG, UK

16

17 4: Centre for Environmental Geochemistry, University of Nottingham, Nottingham, NG7

18 2RD, UK

19

20 5: University of Bonn, Steinmann Institute of Geology, Mineralogy and Paleontology,

21 Nussallee 8, 53115 Bonn, Germany

22

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23 6: Department of Radioisotopes, Institute of Physics CSE, Silesian University of

24 Technology, Konarskiego 22B, 44100 Gliwice, Poland

25

26 7: Key Laboratory of Cenozoic Geology and Environment, Institute of Geology &

27 Geophysics, Chinese Academy of Sciences, P.O. box 9825, Beijing 100029, China

28

29 8: School of Geography, University of Nottingham, University Park, Nottingham, NG7

30 2RD, UK

31

32

33

34 Keywords: abrupt climate change , carbon, forest – steppe ecotone; Holocene, Lake

35 Baikal, palaeolimnology, permafrost

36

37 Type of paper: Primary Research Article

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38

39 Abstract

40

41 The forest – steppe ecotone in southern Siberia is highly sensitive to climate change;

42 global warming is expected to push the ecotone northwards, at the same time resulting in

43 degradation of the underlying permafrost. To gain a deeper understanding of longterm

44 forest – steppe carbon dynamics, we use a highlyresolved, multiproxy,

45 palaeolimnological approach, based on sediment records from . We

46 reconstruct proxies that are relevant to understanding carbon dynamics including carbon

47 mass accumulation rates (CMAR; g C m 2 yr 1) and isotope composition of organic matter

13 48 (δ CTOC ). Forest – steppe dynamics were reconstructed using pollen, and diatom records

49 provided measures of primary production from near and offshore communities. We

50 used a Generalized Additive Model (GAM) to identify significant change points in

51 temporal series, and by applying generalised linear leastsquares regression modelling to

52 components of the multiproxy data, we address: (1) what factors influence carbon

53 dynamics during early Holocene warming and late Holocene cooling?; (2) how did

54 carbon dynamics respond to abrupt subMilankovitch scale events?; and (3) what is the

55 Holocene carbon storage budget for Lake Baikal.

56

57 CMAR values range between 2.8 – 12.5 g C m2 yr 1. Peak burial rates (and greatest

58 variability) occurred during the early Holocene, associated with melting permafrost and

59 retreating glaciers, while lowest burial rates occurred during the neoglacial. Significant

60 shifts in carbon dynamics at 10.3, 4.1 and 2.8 kyr BP, provide compelling evidence for

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61 the sensitivity of the region to subMilankovitch drivers of climate change. We estimate

62 that 1.03 Pg C were buried in Lake Baikal sediments during the Holocene, almost one

63 quarter of which was buried during the early Holocene alone. Combined, our results

64 highlight the importance of understanding the close linkages between carbon cycling and

65 hydrological processes, not just temperatures, in southern Siberian environments.

66

67

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68 Introduction

69

70 Permafrost is highly vulnerable to global warming, and in recent decades has experienced

71 temperature increases of up to 3ºC, with multiple, complex impacts on vegetation,

72 hydrology and the biogeochemical cycling of carbon (Vaughan et al. , 2013). Sporadic –

73 isolated permafrost regions are especially at risk, including those in southern Siberia –

74 northern Mongolia, from degradation through warming, human impact and increased

75 wildfires (Sharkuu, 1998; Romanovsky et al. , 2010; Zhao et al. , 2010; Törnqvist et al. ,

76 2014). Globally, permafrost contains one of the largest pools of organic carbon, and

77 warming ultimately results in the release of this carbon pool to the atmosphere via

78 microbial degradation (Schuur et al. , 2008). Old organic carbon liberated from melting

79 permafrost may also be exported to headwater streams and rivers as dissolved organic

80 carbon (DOC) (Spencer et al. , 2015). In central Siberia, large amounts of DOC are

81 transported from catchments into lakes, especially via rivers at more southerly latitudes

82 where sporadic and isolated permafrost is extensive (Prokushkin et al. , 2011).

83

84 Over long timescales, the nature of carbon release from permafrost soils is rather

85 uncertain (Schuur et al. , 2008), but one potential, underutilised tool for understanding

86 how climate change has influenced carbon dynamics is by lacustrine sediment records of

87 organic geochemistry. These records reflect longterm interactions between lakes and

88 their catchments (Anderson, 2014), especially regions underlain by permafrost (Vonk et

89 al. , 2012). Lakes in general act as an important control on the global carbon cycle, despite

90 occupying only a small percentage of the surface of the earth. Carbon burial to the bottom

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91 of lakes is substantial, especially considering the quantities of sediment that have

92 accumulated since the end of the last glaciation, which likely represents more than two

93 fifths (42 Tg C yr 1) of the amount of organic carbon buried in ocean sediments (c. 100

94 Tg C yr 1) (Dean and Gorham 1998).

95

96 Within lake sediments, a number of different indicators can be used to record the

97 responses of carbon cycling to extrinsic drivers such as climate. For example,

98 sedimentary total organic carbon (TOC) provides a first order estimate of the amount of

99 bulk organic matter that escapes remineralization during sedimentation (Meyers &

100 LallierVerges, 1999). However, TOC is sensitive to changes in sediment accumulation

101 rates, and so arguably a better estimate of organic carbon burial is achieved through the

102 calculation of carbon burial (or mass accumulation) rates (CMAR; g C m 2 yr 1) (Meyers

103 & Teranes, 2001) which are closely associated with the delivery of allochthonous carbon

104 to lakes (e.g. Watanabe et al., 2009; Hyodo & Longstaffe, 2011; Moy et al. , 2011).

105 Sources of organic carbon sequestered into lake sediments may be further discriminated

13 106 through their carbon isotope composition (δ CTOC ) and TOC/total nitrogen (C/N) ratios

107 (Leng & Marshall, 2004). Lake sediment records can also reveal major vegetation

108 changes in the forest steppe ecotone (through pollen analysis, e.g. Bezrukova et al. ,

109 2010; Iglesias et al. , 2014), as well as shifts between primary producers (e.g. diatoms),

110 linked to climate variability (Weckström et al. , 2014). Multiproxy palaeolimnology is a

111 powerful approach to gain deep insight into ecosystem dynamics in permafrost regions

112 over long timescales.

113

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114 One of the most important ecosystems in southern Siberia is Lake Baikal and its

115 catchment. It is the world’s largest lake by volume, but it is also the deepest and oldest

116 lake, with sedimentary records spanning at least 20 million years. Its catchment spans

117 almost 450,000 km 2, from the southern limit of the boreal forest into the steppe regions of

118 northern Mongolia. About 80% of Baikal’s catchment belongs to its largest tributary, the

119 Selenga River, which alone accounts for over half of all river input into the lake.

120 Catchment permafrost is extensive continuous and discontinuous permafrost dominate

121 the east and west portions of the basin (ca. 30%), while sporadic and isolated permafrost

122 dominate the south (Sharku, 1998; Törnqvist et al. , 2014). Annual air temperature trend

123 maps for the past 50 years show southern Siberia to be experiencing some of the largest

124 increases globally (Jones et al. 2012), threatening vulnerable carbon pools including

125 permafrost (Schuur et al. , 2008; Romanovsky et al. , 2010) and the hemiboreal forests

126 (Wu et al. , 2012; DeLuca & Boisvenue, 2012). Lake Baikal itself is also responding to

127 regional warming; surface water temperatures and summer stratification have increased

128 in recent decades (Hampton et al. 2014) while ice cover duration and thickness have

129 declined (Todd and Mackay 2003). Its long sedimentary record contains an estimated

130 4,500 Pg of organic carbon, more than 400 times that contained in its catchment soils

131 (Alin & Johnson 2007), which is essentially locked away permanently. More relevant for

132 understanding contemporary lakecatchment interactions is the amount of organic carbon

133 sequestered since the last deglaciation, which is currently unknown, and the role that

134 climate may have played in this process. Understanding how climate change influenced

135 carbon dynamics in the past has the potential to provide important insights for

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136 understanding how global warming may influence lakecatchment carbon dynamics into

137 the future.

138

139 Here, we apply a palaeolimnological, multiproxy approach to understand Holocene

140 carbon dynamics in the BaikalSelenga catchment at a multidecadal resolution. Global

141 temperatures during the early Holocene were at least as warm as today (Marcott et al .

142 2013), and rates of permafrost warming during the early Holocene were also comparable

143 to rates estimated for present day (Anisimov et al. , 2002). Therefore, comparisons

144 between early and late Holocene periods may provide useful insights into understanding

145 longterm carbon dynamics at the forest – steppe ecotone. The Holocene also experienced

146 several centennialscale abrupt events (Mayewski et al. , 2004; Wanner et al. , 2014), such

147 as the 8.2 kyr cold event (Kleiven et al. , 2008) and the 4.1 kyr arid event (Cullen et al. ,

148 2000) but the extent to which these can influence Holocene carbon dynamics in

149 permafrost regions remains unknown. The multidecadal, multiproxy dataset offered in

150 this study has potential to provide several key insights into carbon dynamics in a climate

151 sensitive, permafrost region. To analyse these data, we use a Generalised Additive

152 Modelling version of a SiZer analysis (Chaudhuri & Marron, 1999; Korhola et al. 2000)

153 for pinpointing significant points of change in the different temporal series, and use

154 generalised least squares regression to investigate how key components of carbon cycling

155 in the lake respond to longterm changes in climate variability. The dataset and methods

156 we have developed and applied in this study presents a unique opportunity to address

157 three principal questions:

158

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159 (1) what are the factors influencing carbon dynamics during early Holocene warming,

160 and how do they compare to the late Holocene?

161 (2) how did carbon dynamics respond to abrupt subMilankovitch scale (e.g. 8.2 and

162 4.1 kyr) events?

163 (3) what is the carbon storage budget for Lake Baikal during the Holocene, and how

164 does this compare with other lakes?

165

166

167 Materials and methods

168

169 Study site

170

171 The Lake Baikal basin is situated in one of the world’s most continental regions;

172 summers are short, warm and wet while winters are long, dry and cold. Summer rainfall

173 stems from the progression of cyclones moving in from west Siberia. In autumn, cold

174 Arctic air intrudes from the Kara Sea to central Asia, which leads to the growth of the

175 Siberian High, a high pressure cell which intensifies during winter, and leads to cold air

176 passing into Asia (Gong & Ho, 2002) influencing the intensity of the East Asian Winter

177 Monsoon (EAWM) (Wu & Wang, 2002).

178

179 The Vydrino Shoulder (51.58°N, 104.85°E) is an isolated high in the south basin of Lake

180 Baikal (Fig. 1). It forms an upper to midslope, underwater terrace of mostly fine

181 grained sediments, free from turbidites and unaffected by bottomwater currents which

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182 can cause sediment focussing (Charlet et al. 2005). The Shoulder sits offshore from

183 several major south basins tributaries (including the Snezhnaya and Vydrinaya rivers,

184 which have their source in the neighbouring KhamarDaban mountain range) and is

185 approximately 130 km from where the Selenga River enters Lake Baikal. Sidescan sonar

186 mosaics and seismic data (Charlet et al. , 2005) show the upper terrace sediments to be

187 relatively undisturbed by tectonic activity and reworking and are therefore suitable for

188 Holocene reconstructions. In the summer of 2001, a suite of cores was extracted from an

189 offshore ridge crest location of continuous sedimentation (>600 m water depth)

190 including a box core (CON016055) and a piston core (CON016053). During retrieval,

191 the upper 12.5 cm of surface sediment were lost from the box core, representing the past

192 c. 800 years. To provide context for carbon dynamics related to recent regional warming,

193 carbon mass accumulation rates were calculated for the past 50 years from a UWITEC

194 gravity core (BAIK137) taken in 2013 to the west of CON01605 cores. Full details of

195 the various core codes, their locations and relevant analyses are given in Table 1.

196

197 Dating

198

199 Radiocarbon dates were obtained by accelerated mass spectrometry (AMS) from pollen

200 and spore concentrates from twelve box core (CON016055) samples (Piotrowska et al. ,

201 2004) (Table S1). All radiocarbon dates were calibrated using IntCal13 radiocarbon

202 calibration curve (Reimer et al. , 2013). Agedepth modelling was done using ‘Bacon2.2’,

203 allowing for variable sediment accumulation rates (Blaauw & Christen, 2011; see Fig. 2).

204 The core was divided in 38 fivecm sections, and prior parameters used for calculations

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205 were: 50 years per cm for accumulation rate with gamma distribution shape 1.5, and

206 default settings for memory (see Fig. 2). The results of Markov Chain Monte Carlo

207 iterations plotted in the upper left corner of Fig. 2 indicate good performance of the

208 model. Sediment samples from BAIK137 were dated using 210 Pb analyses by non

209 destructive gamma spectrometry. Chronologies were calculated using the CRS (constant

210 rate of 210 Pb supply) dating model, after corrections were made for the effect of self

211 absorption of low energy gamma rays within samples (Appleby, 2001).

212

213 Palaeoecology

214

215 Pollen and diatom analyses were undertaken on two different cores extracted from the

216 Vydrino Shoulder (Table 1). Pollen data were analysed at 10 mm intervals from the box

217 core CON016055 and were used to represent longterm vegetation changes in the

218 surrounding landscape. Pollen were counted at magnifications of 400 to 600x, with

219 critical identifications made at 1000x (see Demske et al. , 2005 for full details). Here we

220 report on total arboreal pollen (AP) and Pinus sylvestris pollen (PynSylv) (Scots Pine) as

221 indicators of forest dynamics. A steppe – boreal forest index was also calculated:

222 [( Artemisia +chenopods+ Ephedra )/AP]*100 (Traverse, 1998 in Bezrukova et al. , 2005).

223

224 We used a principal components analysis (PCA) on the pollen data to summarise long

225 term vegetation trends in around the lake (Fig SI). The pollen percentage data were

226 Hellinger transformed prior to analysis. For all subsequent analyses, we multiplied PC1

227 by 1 so that increases in the values of PC1 reflect expansion of boreal forest.

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228

229 Diatoms were analysed at 5 mm resolution from the piston core (CON016053) and

230 represent a proxy for the main contributions of primary productivity within the lake. For

231 each sample at least 300 valves were counted using oil immersion phasecontrast light

232 microscopy at x1000 magnification. Diatom cell fluxes (total and benthic) (cm 2 yr 1

233 x10 6) were estimated by the addition of divinylbenzene microspheres (Battarbee &

234 Kneen, 1982), together with calculated sedimentation rates (cm yr 1).

235

236 Isotope geochemistry

237

238 Isotope geochemistry was undertaken on the box core (CON016055) on contiguous 5

239 mm samples and was used to understand different components of carbon cycling (Leng &

240 Marshall, 2004). Sediments were placed in 5% HCl to remove any CaCO 3 (assumed

241 negligible), then washed over Whatman 41 filter papers with deionised water and dried at

242 40°C in a drying cabinet. When dry, samples were ground to a fine powder and stored in

13 243 glass vials. Carbon isotope ratios (δ CTOC ), percentage total organic carbon (%TOC) and

244 percentage total nitrogen (%TN) (used to calculate C/N) were analysed during

245 combustion in a Carlo Erba 1500 online to a VG Triple Trap and dualinlet mass

13 246 spectrometer. δ CTOC values were converted to the VPDB scale using a withinrun

247 laboratory standard calibrated against NBS19 and NBS22, with C/N ratios calibrated

248 against an Acetanilide standard. Replicate analysis of sample material indicated a

13 249 precision of ±0.1‰ for δ CTOC and ±0.1 for C/N. %TOC was also calculated for the past

250 50 years on BAIK137 sediments, using the methods outlined above.

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251

252 Carbon mass accumulation rates

253

254 Only sediment samples from the piston core (CON016053) were routinely analysed for

255 wet densities and % dry weight at 105 °C, from which dry bulk density (DBD) values

256 could be calculated (Table 1). Therefore, mean pistoncore DBD values for 100year

257 intervals during the Holocene were calculated for the piston core. These were used

258 alongside mean %TOC values for 100year intervals of the Holocene box core (CON01

259 6055) to derive organic matter densities (g cm 3). Using the Box core calibrated age

260 model (cm yr 1), organic carbon mass accumulation rates (CMAR; g C m 2 yr 1) were

261 calculated on the centennialscale averages of %TOC and DBDs. CMAR were also

262 calculated for the past 50 years using %TOC, DBD and sediment accumulation rates

263 calculated for BAIK137.

264

265 Statistical modelling of the Vydrino datasets

266

267 Ecological dynamics are subject to modes of variability across a variety of temporal

268 scales (Jackson & Overpeck, 2000), and so one curve may not be sufficient to capture the

269 complete components of variability within a temporal series. Therefore, for a full

270 appreciation of the longterm dynamics of carbon cycling in Lake Baikal over the

271 Holocene approaches that can take multiple temporal dynamics into account are needed.

272 SiZer analyses (e.g. Chaudhuri & Marron, 1999) can capture such dynamics, by

273 identifying significant trends at different modes of variability. In this study we developed

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274 our own version of a SiZer analysis and applied it to each of the variables using

275 Generalized Additive Modelling (GAM) (Wood 2006). Our method allows temporal

276 autocorrelation to be fitted within each model, which should result in more conservative

277 tests when testing for significant trends (e.g. Park et al. 2004).

278

279 To develop our GAM SiZer method, we used the following procedure combining

280 functions within the package mgcv (Wood 2006), and a script developed by Simpson

281 (2014) in R (R Development Core Team, 2016) on each of the variables:

282 i) fix the smoothing parameter k to a given value using the option in the

283 smoothing term ‘ fx = TRUE ’;

284 ii) test for temporal autocorrelation in the residuals in the model assuming an

285 exponential decay function (e.g. Seddon et al. 2014);

286 iii) refit the GAM model with an appropriate variancecovariance matrix

287 reflected by the temporal autocorrelation using the stable multiple smoothing

288 parameter estimation method (Wood 2004);

289 iv) test for the significance of the slope of the GAM spline using a simultaneous

290 confidence interval method described by Simpson (2014);

291 v) identify which periods contain significantly increasing/ decreasing trends;

292 vi) repeat for different values of k (k = 5, 10, …, kmax );

293 vii) map the time periods of significantly increasing or decreasing trends in a

294 SiZer plot, with positive trends identified in red and negative trends identified

295 in blue.

296

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297 The value kmax is dependent on sample size, and the different sample resolution and

298 temporal structures of our datasets mean that overfitting may be an issue at higher values

299 of k. Therefore, to estimate the maximum value of k we used the ‘ gam.check() ’

300 function in the mcgv package to test whether the smoothing basis dimension for a GAM

301 spline was too high. This command employs a test to compare the residual variance of a

302 model fit with the difference of residuals between neighbours, and then randomly

303 reshuffles the residuals 1000 times to find a null distribution of variance differences (see

304 help file for gam.check() function in mgcv, Wood 2006). For each dataset, our value

305 kmax was selected according to when the variance differences moved above p = 0.05 from

306 the null distribution. Information on the data transformations used (to enable our models

307 to be run using Gaussian error distributions, the kmax values and the mean and median

308 sample resolutions for the different datasets) are provided in Table S2.

309

310 The GAM SiZer methodology presented here is useful for identifying periods of major

311 change within individual temporal series, but our multiproxy study design also means that

312 we were able to use statistical modelling to investigate whether longer term changes in

313 organic geochemistry were linked to changes in climate. A piecewise linear regression

314 revealed a breakpoint in PC1 axis representing longterm forestclimate responses at c.

315 6051 ± 241 cal yr BP (Fig S2). Therefore, we split the data into early Holocene (EH, 11.6

316 – 6.1 kyr) and late Holocene (LH, 6.1 0.8 kyr) periods, and ran linear regressions to

317 check for relationships between longterm landscape/ climate changes and organic

318 geochemistry. Since the CMAR dataset had a different age model to the pollen data, the

319 pollen data were linearly interpolated to the sample ages of the CMAR dataset. We then

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320 used a generalisedleast squares regression to test for relationships between climate and

321 the different withinlake proxies for the two time periods. We checked for the presence of

322 temporal autocorrelation in the residuals, and then fitted a new model assuming

323 exponential decay function to describe the degree of association between samples if

324 required (e.g. Seddon et al. 2014). The models including autocorrelation were compared

325 using the Akaike Information Criterion (AIC) and the best model (lowest AIC) was used

326 to interpret drivers of the changes of carbon cycling over time.

327

328

329 Results

330

331 Sediment sample ages calculated on modelled weighted means shows that the box core

332 sediments were deposited between c. 11.6 – 0.8 cal kyr BP (Fig. 2). Sediment

333 accumulation rates (SAR) range between 30.9 – 9.8 cm kyr 1 (mean 16.3 cm kyr 1), with

334 peak values calculated at 9.8 kyr BP. Thereafter, SAR decline to a low between 4.5 – 4.4

335 kyr BP.

336

337 The stratigraphic data are presented in Fig. 3 and the individual SiZer plots in Fig. 4.

338 Assessment of the SiZer plots help to identify key events and trends in the different proxy

339 profiles. Steppe communities were prevalent in the watershed of Lake Baikal during the

340 early Holocene but declined abruptly at c. 10 kyr BP, before gradually declining to very

341 low values at c. 6.1 kyr BP (Fig. 3d). Pollen from steppe vegetation remained a small but

342 persistent feature of the record for the remainder of the Holocene. Pinus sylvestris (Scots

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343 pine) was virtually absent, but became dominant (i.e. over 50% total land pollen; TLP) by

344 7.0 kyr BP (Fig. 3b). For the remainder of the record tree pollen was above 80% TLP.

345 The first principal component (PC1) of the pollen data explained 73.3 % of the total

346 variance of the dataset (significant by comparison to the broken stick model, Line &

347 Birks 1996) and was dominated by a gradient between coldadapted species such as

348 dwarf birch and the eurythermic Scots Pine (Fig. S1). In general, there was a significant

349 long term increasing trend in PC1 from the start of the Holocene to become more stable

350 during the late Holocene at lower values of k (Fig. 3c, 4g).

351

352 Total diatom cell fluxes (DCF) ranged from c. 0.04 to 2.03 million cells cm 2 yr 1 (Fig.

353 3i). Fluxes were especially significant before 10 kyr BP (Fig. 4e). A final significant

354 decline in DCF was observed at 7.5 kyr BP (Fig. 4e), with no further significant

355 variability for the remainder of the Holocene. In contrast, the fluxes of benthic diatom

356 cells showed more significant variability, particularly at higher frequencies (i.e. higher

357 values of k) for much of the Holocene (Fig. 4f). For example, whilst there were large

358 oscillations in benthic diatom fluxes before c. 10 kyr BP, we also observed significant

359 flux declines at c. 7.5 and 5.5 kyr BP (Fig. 3j, 4f). Mean benthic flux rates for the

360 complete Holocene was 56,000 cells cm 2 yr 1, or c. 10% of mean diatom cell fluxes,

361 highlighting the overall dominance of the planktonic contribution to diatom productivity

362 in this core.

363

364 TOC values were very low during the initial stages of the early Holocene (11.6 – 10.1 kyr

365 BP; mean 1.2%), followed by a significant increase in %TOC values at 10.0 kyr (Fig. 3e;

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366 Fig. 4a), reflecting a steplike shift into increasingly higher Holocene values. In general,

367 three other major periods of change were identified by SiZer analysis: an increase in

368 %TOC at 6.8 kyr BP, and declines in %TOC at 4.1 kyr BP and 2.8 kyr BP (Fig. 4a),

369 reflecting local minima (Fig 3e). In BAIK137, TOC in the uppermost sediments

370 deposited during the past 50 years reached 2.5% (Roberts 2016), the highest values since

13 371 4.7 kyr BP, and some of highest values for the whole Holocene. Sedimentary δ CTOC and

372 C/N ratios were also highly variable and show similar patterns to %TOC. For example,

13 373 sedimentary δ CTOC ranges between –30.7 to –27.0‰ (mean –29.03 ‰), with high

374 frequency oscillations found throughout the record (Fig. 3g), and significant periods of

375 change around 9.4, 7.4, 4.1, 3.6, 2.8 and 2.4 kyr BP (Fig. 4c). C/N ratios fluctuate

376 between 9.9 and 13.8 (mean = 11.6) (Fig. 3f). Abrupt and significant declines are

377 observed at 7.8, 4.1 and 2.8 kyr BP (Figs. 3f, 4b).

378

379 Organic carbon mass accumulation rates were highest during the early Holocene (11.6 –

380 9.0 kyr BP) (Fig. 3h). The SiZer analysis revealed this was also a major period of

381 variability, particularly at higher frequencies (Fig. 4d). For example, peak values of 12.5

382 g C m2 yr 1 were observed at 10.4 kyr BP before they declined rapidly to c. 4.8 g C m2

383 yr 1 at 10.1 kyr BP. A further significant decline was observed between 9.5 – 9.3 kyr BP.

384 Between c. 4.5 – 4.0 kyr CMAR exhibited a significant decline from 7.9 g C m2 yr 1 to

385 3.1 g C m2 yr 1. For much of the late Holocene, CMAR remained low < 5 g m 2 yr 1 with

386 a distinct minimum at 2.8 kyr BP. Mean Holocene CMAR was 5.9 g C m2 yr 1. During

387 the past 5 decades, mean CMAR in BAIK137 were only c. 3 g C m2 yr 1 (Fig. 3h).

388

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389 Modelled PC1 (i.e. the coldadapted/ eurythermic gradient in the pollen data)

390 relationships with organic geochemistry highlight stronger responses during the early

391 Holocene (Fig. 5ad) than late Holocene (Fig. 5eh). Although the most significant

392 (positive) relationship was between %TOC and PC1 during the early Holocene (Fig. 5b),

393 when expressed as burial rates, the strength of the relationship between PC1 and C

394 declined and was negative (Fig. 5d). A significant negative relationship between PC1 and

13 395 δ CTOC was also observed (Fig. 5a), although these relationships were not significant

396 following a sequential Bonferroni correction. In contrast, the only significant relationship

397 found during the late Holocene was between PC1 and C/N values which was also

398 removed once a a sequential Bonferroni correction was applied (Fig. 5g). Given that the

399 sequential Bonferroni corrections can be overly conservative and make it difficult to

400 observe multiple significant relationships in noisy (e.g. ecological) data (Moran 2003),

401 we attempt to ascribe a physical basis to patterns of variability related to uncorrected

402 significant models in the discussion where possible.

403

404

405 Discussion 406

407 Overall concentrations of sedimentary organic carbon in Lake Baikal are low due to high

408 remineralisation rates in the water column (Müller et al. , 2005) and poor burial efficiency

409 (Maerki et al. , 2006; Sobek et al. , 2009, 2014). Burial efficiency is as poor in Lake

410 Baikal as it is in the oceans because of low sediment accumulation rates leading to very

411 high oxygen exposure times (between 10 to over 1000 years, Sobek et al. 2009).

412 Moreover, organic carbon is dominated by autochthonous production (phytoplankton

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413 contribute approximately 90% of organic matter in Lake Baikal, with less than 10%

414 delivered from the catchment (Votintsev et al. , 1975)) which makes it less resistant to

415 oxidation (Sobek et al . 2009). Recently buried organic carbon is also subject to

416 substantial postdepositional degradation, and while this may impact the very recent

417 measurements from BAIK137 (discussed below) the impact on our older sediments of >

418 800 years will likely be very minor (Sobek et al . 2014). Previous multiplelake studies

419 are usually based on single cores taken from central, deep locations, regions that are also

420 subject to sediment focussing, which can result in carbon burial rates higher than

421 expected. While some studies have made corrections for sediment focussing (e.g.

422 Anderson et al . 2014; Heathcote et al. 2015) others have not (e.g. Dong et al. 2012). Crest

423 environments on isolated and interbasin highs (i.e. the Vydrino Shoulder and the

424 Academician Ridge), are not subject to sediment focussing, so no corrections were

425 needed in this study.

426

427 What are the factors influencing carbon dynamics during early Holocene warming and

428 how do they compare to the late Holocene?

429

430 Early Holocene

431 Orbital configurations during the early Holocene resulted in very strong seasonality in

432 central Asia (Bush 2005); summers were warm and wet, while intensely cold winters

433 contributed to low mean northern hemisphere temperatures (Marcott et al. , 2013; Wanner

434 et al. , 2014) (Fig. 3m). High early Holocene summer insolation (Fig. 3n) led to rapid

435 melting of mountain glaciers and permafrost in southern Siberia (Groisman et al. , 2013),

20 Page 21 of 71 Global Change Biology

436 and increased river flow into Lake Baikal (Mackay et al. , 2011), resulting in lake levels

437 rising by approximately 15 m (Urabe et al. , 2004). High CMAR during the early

438 Holocene (Fig. 3h) most likely represents allochthonous sources from melting

439 permafrost, during summer months of high fluvial input (Fig 6g); higher than average

440 C/N (Fig. 6d) and δ13 C (Fig. 6e) values at this time are also indicative of increased

441 allochthonous carbon to Lake Baikal sediments (Table 2).

442

443 PC1 generally reflects vegetation responses to insolation driven changes in climate over

444 the Holocene (Tarasov et al . 2007) (Fig. 3m). Forest expansion mirrors the early

13 445 Holocene decline in global CO 2 concentrations (Fig. 3k) and an increase in ice core δ C

446 (Fig. 3l) is indicative of the contribution made by expanding boreal forests to the global

447 increase in terrestrial biomass (Elsig et al. , 2009). Forest expansion will have led to

448 stabilization of catchment soils which likely accounts for the significant negative

449 relationship between PC1 and carbon burial rates after 9.6 kyr BP. Lower CMAR values

450 may also be linked to lower Selenga River discharge at this time (Fig. 6g) (Prokushkin et

451 al. 2011).

452

453 Late Holocene

454

455 Scots Pine is a eurythermic and drought resistant conifer, and its maximum expansion

456 between 7 – 4 kyr BP (Fig 3b) is linked to regional summer temperature maxima and

457 gradually increasing aridity in southern Siberia (Bush 2005; Tarasov et al. , 2007) caused

458 by surface albedo feedbacks amplifying the climate system (Ganopolski et al. , (1998).

21 Global Change Biology Page 22 of 71

13 459 δ CTOC values are lowest during this period, probably because pelagic diatoms dominate

460 primary production at this time, as well as a potential contribution of respired carbon

461 delivered to the lake from mature forest soils (Table 2). Increased CMAR at c. 5 – 4.5 kyr

462 BP is coincident with a small peak in modelled summer relative humidity (Bush, 2005),

463 and may be related to organic carbon from melting permafrost being delivered to the lake.

464

465 Declining late Holocene annual average air temperatures (Fig. 3m) are implicated in a

466 renewed phase of Siberian permafrost formation on previously thawed surfaces, leading

467 to characteristic twolayered frozen structures (Anisimov et al., 2002). Renewed

468 permafrost formation was likely responsible for persistent low carbon burial rates after 4

469 kyr BP (Fig. 6f). Persistent low CMAR observed here is in contrast to (i) mean CMAR

470 for lakes in SW Greenland, which showed no difference between mid and late Holocene

471 periods (Anderson et al. , 2009), and (ii) to mean CMAR for Chinese lakes which peaked

472 between 3 – 1 kyr BP, linked to intensified human impact (Wang et al . 2015). These

473 comparisons highlight the importance of regional activities when trying to understand

474 delivery of allochthonous matter to lakes, although the potential influence of sediment

475 focussing was not considered in either study.

476

477 How do carbon dynamics respond to abrupt, subMilankovitch scale events?

478

479 (i) Early Holocene abrupt events

480 When ice sheets were still an important feature of North American and Eurasian

481 landmasses, early Holocene climate was punctuated by pervasive millennialscale

22 Page 23 of 71 Global Change Biology

482 variability (e.g. Bond et al. , 1997, 2001; Fisher et al. , 2002; Mayewski et al. , 2004;

483 Wanner et al. , 2008; Wanner & Bütikofer, 2008). Variability was associated with strong

484 meltwater pulses flowing into the north Atlantic from melting Northern Hemisphere ice

485 sheets (e.g. Bond et al. , 1997; Carlson et al. , 2008). These pulses resulted in atmospheric

486 cooling (Rasmussen et al. , 2006) which influenced terrestrial, freshwater and marine

487 ecosystems worldwide through teleconnection processes (Björck et al. , 1997; Mayewski

488 et al ., 2004; Berner et al ., 2010; Smith et al. 2016). Modelling studies show that

489 reductions in Atlantic Meridional Overturning Circulation (AMOC) lead to northern

490 surface wind anomalies in central Asia (Zhang & Delworth, 2005). The potassium (K +)

491 record from the GISP2 ice core is a proxy for the strength of the Siberian High (SH). K +

492 records show that the SH was exceptionally intense at c. 10.8, 10.3, 9.2 and 8.2 kyr BP

493 (Fig. 6b) (Mayewski et al. , 1997), periods coincident with reductions in AMOC. In east

494 Asia, these events (together with changes in solar variability and ENSO) have been

495 implicated in periods of weak Asian summer monsoon, (e.g. D’Arrigo et al. , 2005;

496 Dykoski et al. , 2005; Wang et al. , 2005; Cai et al. , 2008; Chen et al. , 2015), and

497 widespread aridity e.g. on the Tibetan Plateau (Thompson et al. , 1997). Very little is

498 known as to how these events impacted ecosystems in southern Siberia. During such

499 events, a cooler northern hemisphere led to a strengthening of the Asian winter monsoon

500 (Sun et al . 2012). We hypothesize that a more intense Siberian High resulted in a halt to

501 the expansion of taiga forest and a reduction in active permafrost layers, and caused a

502 decline in pelagic productivity in the lake itself, linked to extended periods of ice and

503 snow cover (Mackay et al . 2005).

504

23 Global Change Biology Page 24 of 71

505 Our data show that although significant changes in vegetation were occurring along the

506 forest – steppe transition zone during the early Holocene (Fig. 4g), the direction of

507 change (i.e. expansion of taiga forest) was unaltered, despite abrupt climate change

508 events (Fig. 3a, c; Fig. 6d). However, a small increase in steppe – forest index at 10.3 kyr

509 BP (Fig. 3d), is concurrent with increases in steppe vegetation in the eastern Sayan

510 Mountain range to the west of Lake Baikal (Mackay et al. , 2012), and to the east of

511 Baikal from Lake Kotokel (Bezrukova et al. , 2010). We conclude therefore that

512 insolationdriven changes driving taiga forest expansion were stronger than sub

513 Milankovitch forcings, although the latter did appear to result in temporary increases in

514 steppe vegetation. The K+ peak at 10.3 kyr BP (Fig. 6b) was coincident with a significant

515 decline in CMAR (Fig. 3h; 4d) likely linked to both less permafrost melting and reduced

516 river flow (less glacier melt) into the lake because of increased cold and aridity (Mackay

517 et al. , 2011; Fig. 6g). At this time total diatom fluxes were highly variable (DCF) (Fig. 3i,

518 Fig. 4e) with a significant increase in benthic diatom flux (Fig. 3j; Fig. 4f), in line with

519 impacts expected from changes in ice cover associated with a more intense Siberian

520 High. These simultaneous, significant changes in both Lake Baikal and its catchment

521 (Fig. 4, 6) highlights the importance of our analyses in unambiguously identifying the

522 impacts of subMilankovitch forcings on ecosystems remote from oceanic influences.

523

524 Although the 8.2 kyr event is one of most studied cold events linked to freshening of the

525 North Atlantic, few, if any, high resolution records exist for its impact anywhere in

526 Siberia (see Fig. 1 in Morrill et al . 2013). In general, temperatures around the Europe and

527 the North Atlantic cooled by approximately 1 °C, especially during wintertime (Alley &

24 Page 25 of 71 Global Change Biology

528 Ágústsdóttir 2005; Rohling & Pälike 2005), while there is strong evidence of increased

529 aridity, especially in regions affected by the Asian monsoon (Morrill et al . 2013). A fall

18 530 in Vydrino δ Odiatom values are indicative of reduced Selenga River flow (Fig. 6g), in

531 line with increased aridity caused by a stronger Siberian High (Mackay et al. , 2011),

532 albeit a Siberian High not as strong as that which developed at 10.3 kyr BP (Fig. 6b).

533 Even though we are able to reconstruct carbon dynamics at a resolution comparable to

534 that required by Morrill et al . (2013) of under 50 years, any impact of increased cooling /

535 aridity on regional ecosystems was minimal (Fig. 4). There is a small increase in the flux

536 of benthic diatoms (Fig. 3j) but this is unlikely to be significant (Fig. 4f). Tentatively,

537 therefore, our proxy data suggest that the 8.2 kyr event resulted in a small, temporary

538 shift in the composition of primary producers in Lake Baikal, although overall carbon

539 burial to the bottom sediments remained largely unchanged. Changes in vegetation

540 composition in the southern Siberian catchment did not change either. That we observed

541 no significant change in any of our analyses, suggests that climatic impacts in southern

542 Siberia were not as strong as experienced in regions around the e.g. North Atlantic.

543 Perhaps this is due to greater wintertime than summertime impacts (Alley & Ágústsdóttir

544 2005), promoting aridity through a more prolonged Siberian High, but little change to

545 summertime impacts such diatom growth and permafrost melting.

546

547 (ii) Mid to late Holocene abrupt events

548 Unlike early and late Holocene periods, it is not clear what caused mid Holocene cold

549 events (Wanner et al. , 2014). Nevertheless, the most striking change in all our

550 geochemical indicators since the demise of northern hemisphere icesheets, occurs

25 Global Change Biology Page 26 of 71

551 between 4.4 – 4.0 kyr BP (Fig. 3, 6). After this event, none of these indicators return to

552 earlier Holocene values (Fig. 3), suggesting that a stepchange occurred with respect to

553 carbon dynamics at the foreststeppe ecotone in southern Siberia.

554

555 The shift in carbon dynamics is coeval with abrupt hydrological changes reconstructed

556 elsewhere in the world, linked to major shifts in largescale oceanatmosphere tropical

557 dynamics, including a weakening of the El Niño Southern Oscillation (ENSO)

558 (McGregor et al. , 2013; Dixit et al. , 2014), and a weakening of the Asian summer

559 monsoon (Dykoski et al. , 2005; Wang et al. , 2005; Berkelhammer et al. 2012). Increased

560 aridity has also been reconstructed in Western Europe (Smith et al . 2016), the Middle

561 East (e.g. Cullen et al . 2000; Arz et al . 2006; continental North America (Booth et al. ,

562 2005; Newby et al. , 2014), and in northern Africa (Gasse, 2000). Kilimanjaro ice cover

563 also declined at this time, and a 3cm thick dust layer at c. 4 kyr BP is indicative of

564 extremely dry conditions (Thompson et al. , 2002; Fig. 6j). Dust records from ice cores on

565 the Tibetan Plateau (Thompson et al. , 1997) and tropical South America (Thompson et

566 al . 2000) provide further evidence of widespread aridity at this time, (Fig. 6i, k). It is

567 likely therefore, that the 4.1 kyr BP event in the Lake Baikal watershed may be due to a

568 complex set of interactions between atmosphere and tropical ocean dynamics causing

569 aridity in southern Siberia. In contrast, changes in diatom fluxes (Fig. 3i, j) were well

570 within existing variability. Indeed, there were no significant changes observed in total

571 diatom cell fluxes for the past 6 kyr in Lake Baikal (Fig. 4e), which suggests that factors

572 that caused major fluxes in diatoms during the early Holocene had little influence during

573 the second half of the interglacial.

26 Page 27 of 71 Global Change Biology

574

575 Late Holocene cold events were caused by several “overlapping” factors (such as

576 volcanic eruptions and solar minima) against a backdrop of low NH summer insolation

577 (e.g. Wanner et al. , 2008; 2014) and amplified by centennialscale oceanic variability

578 (Renssen et al. , 2006). The event dated at c. 2.8 kyr BP is concurrent with a deep, abrupt

579 reduction in solar activity (Fig. 6a) (Grand Solar Minimum) which led to a decline in

580 surface water temperatures in the North Atlantic (Andersson et al. , 2003) and weaker

581 meridional overturning circulation (Hall et al ., 2004). A small increase in GISP2 K +

582 concentrations (Fig. 6b) indicates a strengthened Siberian High, concomitant with glacier

583 advances in central Asia (Mayewski et al. , 2004), a weaker Asian summer monsoon

584 (Dykoski et al. , 2005) and dustinferred aridity over the Tibetan plateau (Thompson et

18 585 al. , 1997) (Fig. 6i). In the Lake Baikal region, the low resolution of δ Odiatom values at

586 this time precludes robust interpretation of Selenga flow into Lake Baikal, except to say

587 that it was likely low ((Fig. 6g). SiZer analyses reveals highly significant changes in

588 carbon dynamics at this time (Fig. 4ad), likely linked to a cooler, more arid climate. The

13 589 increase in sedimentary δ CTOC values (Fig. 3c) is concomitant with a small increase in

590 benthic diatom fluxes, perhaps indicative of a relative shift in the balance between near

591 and offshore primary producers at this time.

592

593 How much carbon is stored in Lake Baikal sediments deposited during the Holocene?

594

595 Mean carbon burial rates for BAIK137 for the past 50 years are 2.70 g C m2 yr 1, similar

596 to previous estimated rates in the south basin of 2.62 g C m2 yr 1 (Müller et al . 2005) and

27 Global Change Biology Page 28 of 71

597 2.7 g C m2 yr 1 (Alin & Johnson 2007). Because of very high oxygen exposure times and

598 the dominance of autochthonous sources (Sobek et al . 2009), these values are very much

599 at the lower end of burial rates for lakes in general (Alin & Johnson, 2007) and northern,

600 midlatitude (Heathcote et al . 2015) and culturally eutrophic (Anderson et al . 2014) lakes

601 in particular. Values are similar however, to longterm mean rates for European

602 (Kortelainen et al ., 2004; Kastowski et al. , 2011), high latitude (Anderson et al. , 2009,

603 Chinese (Wang et al. , 2015) and other large oligotrophic lakes (Dean & Gorham, 1998;

604 Einsele et al. , 2001). The surface area of Lake Baikal covers 31,722 km 2 (de Batist et al .

605 2006). Upscaling to the rate of organic carbon burial across the whole lake suggests that

606 at least c. 8.56 x 10 5 Pg organic carbon are buried each year (similar to a previous

607 estimate by Alin & Johnson (2007; 8.47 10 5 Pg C yr 1) but higher than that estimated by

608 Einsele et al . (2001; 6.3 x 10 5 Pg C yr 1)). These rates suggest that 0.1% 0.3% of

609 estimated global annual storage of carbon into lake sediments (0.03 – 0.07 Pg C yr 1; Cole

610 et al . 2007) occurs in Lake Baikal alone. In Europe, lakes are estimated to cover 240,000

611 km 2, and sequester 1.25 Mt C yr 1 (Kastowski et al. 2011). Lake Baikal sequesters only

612 about 7% of this amount, despite its area alone approximating to 15% of the surface area

613 of all European lakes. That carbon burial rates in Lake Baikal are less than might be

614 expected, is almost certainly down to its low burial efficiency.

615

616 Burial rates calculated for Lake Baikal were mainly obtained from the bottom sediments

617 from the south basin. However, sedimentation is not continuous in these regions because

618 large turbidite systems converge on the basin floors (Colman et al . 2003). The majority of

619 palaeoenvironmental studies from Lake Baikal are undertaken in regions of continuous

28 Page 29 of 71 Global Change Biology

620 sedimentation such as interbasin or isolated highs, including the Academician Ridge and

621 the Vydrino Shoulder (Fig. 1). It is from these two regions where the best resolved

622 Holocene profiles, with available TOC data, can be found (e.g. Horiuchi et al . 2000;

13 623 Watanabe et al . 2009) (Fig. S4). A compilation of Holocene %TOC and δ CTOC records

624 reveals similarities across the length of the lake (Fig. S3; Fig. S4 a,b). These temporally

625 coherent observations indicate that regionalscale drivers influenced carbon dynamics

626 throughout Lake Baikal (Table 2) (Fig. 5d). We therefore estimated organic carbon burial

627 budgets during early (11.7 – 10 kyr BP, mid (10 – 4 kyr BP) and late (4 – 1 kyr BP)

628 Holocene periods. Burial rates of organic carbon were consistently higher at Vydrino than

629 on the Academician Ridge, and mean burial rates were substantially higher during the

630 early Holocene than the middle or late periods in both regions (Table 3). Burial rates are

631 likely higher on the Vydrino Shoulder because although autochthonous sources of

632 organic carbon dominate both regions, burial efficiencies on the Academician Ridge are

633 very low due to extraordinarily high oxygen exposure times of over 1000 years; on

634 Vydrino oxygen exposure times are of the order of 10s of years (Sobek et al. 2009).

635 There is considerable variation in burial rates between the two regions, but higher CMAR

636 during the early Holocene highlights the importance of melting glaciers and permafrost

637 on carbon budgets for the whole lake, not just coastal regions of the south basin. Using

638 mean burial rates for early, mid and late Holocene periods, we estimate that 1.03 Pg

639 organic carbon have been buried in Lake Baikal sediments since the start of the

640 Holocene, and almost one quarter of this was deposited before 10 kyr BP. Interestingly if

641 we had just used annual rate of carbon burial for at BAIK137 (2.7 g C m2 yr 1), the

642 estimated budget for buried carbon during the Holocene is similar at 1.00 Pg C. Global

29 Global Change Biology Page 30 of 71

643 carbon storage in lake sediments during the Holocene range from 428 Pg (Cole et al .

644 2007) to 820 Pg (Einsele et al . 2001). Large lakes (area > 10,000 km 2) account for only

645 27 Pg C stored during the Holocene (Cole et al . 2007), so the Lake Baikal contribution to

646 this figure is relatively minor (c. 4%). In comparison to Boreal lakes in general, Holocene

647 carbon storage in Baikal sediments is still only between 45% (Kortelainen et al . 2004).

648 Finally, we estimate that TOC buried in Lake Baikal sediments since its formation is

649 likely to be substantially lower than the 4,500 Pg given by Alin & Johnson (2007). They

650 assumed constant sedimentation rates based on 210 Pb dated cores from Edgington et al .

651 (1991) of 0.0595 cm yr 1. However, these rates are from uppermost sediments, and rates

652 decline as sediments become more compacted. For the Holocene, we estimate average

653 sedimentation rates of 0.0163 cm yr 1, while for other regions in the lake, sedimentation

654 rates have been estimated to be about 0.030 cm yr 1 (Colman et al. 2003). Correcting for

655 slower sedimentation rates in more compacted sediments, the total amount of organic

656 carbon buried in Baikal sediments may well be in the order of only c. 2,200 Pg carbon.

657

658 Although on a global perspective, Holocene carbon stored in Lake Baikal is relatively

659 minor, that almost one quarter was deposited during the first few thousand years may

660 have had major implications for biodiversity and ecosystem functioning of the lake.

661 Large supplies of allochthonous carbon exported to lakes influences lake water properties

662 including light and heat penetration because of the optical properties of dissolved organic

663 matter (Solomon et al . 2015). For example, light extinction rates are faster, so resulting in

664 a decline in primary production. These processes may account for the decline in diatom

665 cell fluxes concomitant with rapid increases in CMAR (Fig. 3h, i). Work is ongoing to

30 Page 31 of 71 Global Change Biology

666 assess overall impact on diatom productivity – biodiversity relationships, and our

667 unpublished results indicate a major decline in diatom palaeoproductivity at this time.

668

669 Highresolution, multiproxy, palaeolimnology has demonstrated that carbon dynamics at

670 the forest – steppe ecotone were highly variable during the Holocene. Allochthonous

671 delivery was highest during the early Holocene because high summer insolation and

672 increasing northern hemisphere temperatures caused rapid glacier retreat and melting

673 permafrost, releasing carbon with little forest to stabilize catchment soils. We estimate

674 the approximately one quarter of the Holocene carbon budget was sequestered during this

675 period, which may have had a profound effect on primary production and diversity of

676 largecelled diatom species. Warm summers during the Early Holocene were vulnerable

677 to extended winter cooling associated with periods of increased intensity of the Siberian

678 High. These resulted in abrupt drops in organic carbon burial rates, concomitant with

679 hydrological changes in the catchment. That these changes occurred almost

680 simultaneously with changes elsewhere (e.g. decline in Asian summer monsoon (Dykoski

681 et al. , 2005) and increased aridity on the Tibetan Plateau (Thompson et al. , 1997))

682 highlight that carbon dynamics in central Asia, far from oceanic influences, were highly

683 responsive to changes in the global climate system during the early Holocene. Sustained

684 low diatom productivity and carbon burial after c. 3 kyr BP is concurrent with the

685 neoglacial, linked to pronounced cooling (Marcott et al. , 2013) and aridity caused by

686 vegetation and snow / ice albedo feedbacks in central Asia (e.g. Ganopolski et al. , 1998;

687 Renssen et al. , 2006), leading to permafrost refreezing again.

688

31 Global Change Biology Page 32 of 71

689 Substantial warming over the past 50 years has led to permafrost degradation in southern

690 Siberia (Törnqvist et al ., 2014) and ecological changes in Lake Baikal (Hampton et al .

691 2014). Yet if current rates of permafrost warming are comparable to those during the

692 early Holocene (Anisimov et al ., 2002, the influence on carbon dynamics to Lake Baikal

693 have yet to be realised. One reason for the discrepancy may be related to river discharge,

694 which increases DOC input into Boreal lakes Prokushkin et al ., (2011). During the early

695 Holocene, river discharge into Lake Baikal was much greater (Mackay et al . 2011)

696 because glaciers were melting, causing lake levels to rise substantially (Urabe et al .

697 2004), which in turn likely resulted in the very high carbon burial rates observed. In

698 recent decades, average runoff from Selenga River basin has declined, leading to

699 decreased sediment loads (Törnqvist et al ., 2014). Low mean Baikal carbon burial rates

700 during the past 50 years are in contrast to other studies where recent increases in CMAR

701 have been attributed to increased agriculture, e.g. China (Dong et al ., 2012) and Europe

702 (Anderson et al ., 2014) or global warming / increased deposition of reactive nitrogen e.g.

703 northern lakes in North America (Heathcote et al . 2015). In the near future, it is doubtful

704 whether nutrient enrichment or warming will result in increased carbon burial to Baikal

705 sediments. There is increasing evidence that nutrient enrichment of coastal waters in Lake

706 Baikal are starting to have an impact on nearshore communities (Timoshkin et al . 2016),

707 but there is as yet no evidence of nutrient enrichment in pelagic Lake Baikal (Izmest’eva

708 et al . 2016). And although regional warming and forest fires are predicted to increase in

709 the near future, driving the foreststeppe ecotone northwards (Tchebakova et al . 2009),

710 southern Siberia is predicted to become more arid (Törnqvist et al. , 2014), leading to a

711 decline in Selenga River discharge. So despite further permafrost degradation, large

32 Page 33 of 71 Global Change Biology

712 quantities of released organic carbon may yet not find a route into Lake Baikal. Taken

713 together, our data provide new and important insights into how abrupt climate change

714 events can influence Holocene carbon dynamics in even very remote regions. However,

715 understanding future changes to carbon dynamics must take account of hydrological

716 variability as well as warming temperatures.

717

718

719 Acknowledgements. We wish to acknowledge the various agencies who helped to fund

720 this work, especially UK NERC (IP/635/0300; NE/J010227/1), the EU FPV programme

721 (EVK2CT20000057) and the Norwegian Research Council (IGNEX ref: 249894/F20).

722 We thank Dr Alexander Prokopenko for providing the TOC data from the Buguldieka

723 Saddle, used in Fig S4B. We thank UCL Geography Cartography Unit who helped

724 prepared the figures, David Adger and two anonymous reviews for very insightful

725 comments which have helped to improve the manuscript considerably.

726

33 Global Change Biology Page 34 of 71

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1246 Table 1: Location of sediment cores investigated in this study, and their analyses

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1248

Core code Type Lat. Long. Water Core Analyses

depth length

CON01 piston 51.5849 104.8548 675 m 10.45 m DBD; 6053 diatoms 14 13 CON01 box 51.5835 104.8518 665 m 2.50 m C; δ CTOC ; 6055 TOC; C/N; CMAR; pollen BAIK137 gravity 51.5683 104.5286 1080 m 0.47 m DBD; TOC; CMAR 1249 1250

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1251 Table 2: Factors likely to influence organic geochemistry in Lake Baikal sediments away 1252 from Holocene mean values: %TOC = 1.8%; CN = 11.6; δ13 C values = –29.03 ‰ 1253 13 Factor TOC C/N δ CORG Increased planktonic Increase Decrease Decrease 1

diatoms

Relative increase in Increase Decrease No change 2

pelagic productivity

Relative increase in near Decrease Unknown Increase 3

shore productivity

Increased picoplankton Increase Decrease Unknown 4

Increased terrestrial input Increase Increase Decrease 5

from mature soils

Catchment DOM No change Increase Increase 6

Increased C 4 terrestrial NA NA NA

input 7

Increased atmospheric No change No change No change

8 pCO 2

Increased ice cover 9 Decrease Unknown No change

Gas hydrates 10 No change No change No change

1254

1255 1: at present, approximately 90% of organic matter in Lake Baikal is derived from

1256 phytoplankton, mainly diatoms during spring and autumn overturn; open water diatoms

1257 range between –28‰ to –35‰ (mean –29‰); 2. In pelagic Baikal, the HCO 3 pool is so

1258 large, no isotopic discrimination takes place (Yoshii et al . 1999); 3: flora in littoral

58 Page 59 of 71 Global Change Biology

1259 regions have higher δ13 C values; aquatic macrophytes range between –5‰ to –18‰ and

1260 benthic algae between –5‰ to –11‰ (mean –9‰) (Kiyashko et al. , 1998; Yoshii, 1999;

1261 Yoshii et al. , 1999); 4: As far as we can ascertain, very little research has specifically

1262 looked at C fractionation in picoplankton. However, Sakata et al. , (1997) suggest values

1263 of –22‰ to –30‰; 5: welldeveloped soils result in an increase in 13 Cdepleted respired

1264 CO 2 (Hammarlund, 1992; Reuss et al ., 2010); 6: dissolved organic matter from

1265 catchment rivers has δ13 C value of –26‰ to –27‰ (Yoshioka et al. , 2002); 7. molecular

1266 isotopic stratigraphy of sedimentary longchain nalkanes did not detect any C 4 plants

1267 within its watershed during the late Quaternary (Brincat et al. , 2000); 8: according to

1268 Prokopenko et al. , (1999) increased Holocene atmospheric CO 2 concentrations resulted in

13 1269 a decline in δ CORG values, but there is no relationship between Holocene CO 2

13 1270 concentrations and δ CORG values (Fig 3); 9: biogenic silica inferred productivity is

1271 much lower during cold glacial periods with significantly extended ice cover (Mackay,

1272 2007) but because of low overall primary production under the ice and higher CO 2

1273 solubility in colder water, isotopic discrimination is not thought to be important in Lake

1274 Baikal (Watanabe et al. , 2004) ; 10 : A withinlake process unique to Lake Baikal is the

1275 occurrence of sedimentary methane hydrates (Granin & Granina, 2002). Prokopenko &

1276 Williams (2004) suggested that the relatively negative Holocene TOC δ13 C values (in

1277 comparison to values for the late glacial of c. –24‰) may have been caused by deglacial

1278 methane emissions, with methane accumulating under winter ice (Prokopenko &

1279 Williams, 2005). However, teragrams of methane would need to be emitted, but only 10s

1280 of megagrams have actually been measured (Schmid et al. , 2007), making it unlikely that

1281 δ13 Cdepleted methane drives lower sedimentary δ13 C values.

59 Global Change Biology Page 60 of 71

1282

1283

1284 Table 3: Organic carbon burial rates determined for early, middle and late Holocene

1285 periods, based on 5 Holocene studies (see text for details and Fig 1 for locations).

1286

Early Holocene Middle Holocene Late Holocene OC

CMAR (g C m 2 yr 1) CMAR (g C m 2 yr 1) CMAR (g C m 2 yr 1)

CON016055 8.97 6.21 3.84

Ver94.St16 (AR) 2.90 1.66 2.97

5GC (AR) 5.45 1.97 1.17

StPC (AR) 1.19 0.44 1.21

6GC (AR) 5.01 2.77 1.81

Mean (s.d.) 4.71 (2.94) 2.61 (2.18) 2.20 (2.17) 1287

1288

60 Page 61 of 71 Global Change Biology

1289 Figure Legends

1290 Figure 1 . Map of Lake Baikal and its catchment, with locations of the different cores

1291 mentioned or utilized in this study highlighted.

1292

1293 Figure 2. ‘Bacon’ Agedepth model (Blaauw & Christen, 2011) for Vydrino box core

1294 (CON0160505) of radiocarbon AMS dates calibrated using IntCal13 radiocarbon

1295 calibration curve (Reimer et al. , 2013).

1296

1297 Figure 3. Multiproxy data determined for Holocene sediments from the Vydrino

1298 Shoulder, Lake Baikal. Vegetation (3ad) and organic geochemistry data (3eh) are from

1299 Vydrino Shoulder core CON016055. Diatom data (3ij) are from Vydrino Shoulder core

1300 CON016053. (a): % Arboreal Pollen; (b): Pinus sylvestris pollen (%PinSylv); (c):

1301 Pollen PC1 scores; (d): steppe – forest index; (e): total organic carbon (%TOC); (f): total

13 1302 organic carbon / total organic nitrogen ratios (C/N); (g): δ CTOC (‰); (h): carbon mass

1303 accumulation rates (CMAR; g C m 2 yr 1) in 100yr bins; (i): diatom cell fluxes (DCF cm

1304 2 yr 1 x10 6) from CON016053; (j): benthic diatom fluxes (filled silhouette) with x5

1305 exaggeration to see fluxes in detail (empty silhouette); (k): CO 2 data (p.p.m.v.) from

1306 Dome C ice core (Flückiger et al. , 2002); (l): δ13 C ice core records Dome C ice core

1307 (Elsig et al. , 2009); (m): mean northern hemisphere temperature stack records for 60°

1308 latitude bands (30° N – 90° N) (Marcott et al. , 2013); (n): July insolation 50° N (W m 2)

1309 (Berger & Loutre, 1991). The horizontal dotted line at 6.1 kyr BP marks significant

1310 change in PC1 identified by breakpoint analysis. Light blue zones denote abrupt reversal

1311 events at c. 10.3, 8.2, 4.1 and 2.8 kyr BP.

61 Global Change Biology Page 62 of 71

1312

1313 Figure 4. Individual SiZer plots from our GAM SiZer analyses. Grey areas are periods of

1314 nonsignificant change, while blue and red periods show periods of significant decreasing

1315 / increasing change, respectively.

1316

1317 Figure 5. Modelled relationships between PC1 scores and organic geochemistry for early

1318 (5ad) and late (5eh) periods. Solid line indicates a significant relationship, p=0.05.

1319

1320 Figure 6. Multiarchive data plotted alongside ‘deviations from mean’ values of organic

1321 geochemical records (6cf) from Vydrino Shoulder core CON016055. (a): Sunspot

1322 numbers (Solanki et al. , 2004); (b): K + ion concentrations (ppb) from GISP2 D core

1323 (Mayewski et al. , 1997); (c): total organic carbon (%TOC); (d): total organic carbon /

13 1324 total organic nitrogen ratios (C/N); (e): δ CTOC (‰); (f): carbon mass accumulation rates

2 1 18 1325 (CMAR; g C m yr ) in 100yr bins; (g): δ Odiatom record from Vydrino Shoulder piston

1326 core CON0160505 (Mackay et al. , 2011); (h): four stacked records of relative

1327 abundance of haematite stained grains (%HSG) in North Atlantic sediments (Bond et al. ,

1328 2001); (i): dust concentrations (x10 3 ml 1) from QinghaiTibetan Guliya ice core

1329 (Thompson et al. , 1997); (j): 50yr mean dust concentrations (ml 1) from Mount

1330 Kilimanjaro ice core NIF3 (Thompson et al. , 2002) plotted on a log scale; (k): 50yr

1331 mean dust concentrations (ml 1) from Huascarán ice core, Peru (Thompson et al. , 2000)

1332 plotted on a log scale; (l): XRF Mn element density (cps) from Shaban Deep basin,

1333 northern Red Sea core GeoB 58362 (Arz et al. , 2006); (m): δ18 O (‰) of shallowwater

1334 foraminifera Globigerinoides ruber from Shaban Deep basin, northern Red Sea core

62 Page 63 of 71 Global Change Biology

1335 GeoB 58362 (Arz et al. , 2006); (n): Dolomite (% wt) from Gulf of Oman sediment core

1336 M5422 (Cullen et al. , 2000); (o): δ 18 O (‰) of ostracod Melanoides tuberculata from

1337 palaeolake Kotla Dahar, NW India (Dixit et al. , 2014); (p): δ 18 O (‰) record from

1338 Mawmluh Cave speleothem, NE India (Berkelhammer et al. , 2012); (q): δ18 O (‰) record

1339 from Dongge Cave speleothem, SE China (Dykoski et al. , 2005). Light blue zones denote

1340 cold reversal events at c. 10.8, 10.3, 8.2, 4.1 and 2.8 kyr BP.

1341

1342

63 Global Change Biology Page 64 of 71

1343 Supplementary Figure Legends

1344

1345 Figure S1. PCA biplot of pollen data. Codes used include Cyp = Cyperaceae; AlnFrut =

1346 Alnus fruticosa type; Tubul = Compositae Asteroideae; PinSylv = Pinus sylvestris type;

1347 PinSib = Pinus sibirica type; Betnana = Betula nana type; Betun = Betula

1348 undifferentiated. Full details given in (Demske et al. , 2005).

1349

1350 Figure S2. Breakpoint analysis of pollen PCA axis 1 data.

1351

1352 Figure S3. Compiled δ13 C data from Lake Baikal. A: Vydrino, this study; B: St.5GC

1353 from the Academician Ridge (Watanabe et al. , 2009); C: St.5PC from the Academician

1354 Ridge (Watanabe et al. , 2009); D: St.6GC from the Academician Ridge (Watanabe et al. ,

1355 2009); E: Ver94/St16 from the Academician Ridge (Horiuchi et al. 2000).

1356

1357 Figure S4A. Compiled TOC data from Lake Baikal plotted against a radiocarbon age

1358 scale. A: Vydrino, this study; B: St.5GC from the Academician Ridge (Watanabe et al. ,

1359 2009); C: St.5PC from the Academician Ridge (Watanabe et al. , 2009); D: St.6GC from

1360 the Academician Ridge (Watanabe et al. , 2009). E: Core Ver94.St.16 from the

1361 Academician Ridge (Horiuchi et al. , 2000);

1362

1363 Figure S4B. Compiled Holocene TOC data from Lake Baikal plotted against a depth

1364 scale. A: Core Ver93/2GC24 from the Buguldieka Saddle, opposite the shallow waters

1365 of the Selenga Delta (Karabanov et al . 2004); B: Core BDP932 from the Buguldieka

64 Page 65 of 71 Global Change Biology

1366 Saddle, opposite the shallow waters of the Selenga Delta (Prokopenko et al . 1999).

1367 Approximate date horizons are derived from the revised chronology presented by

1368 Prokopenko et al . (2007), but no suitable agedepth model is available from which to plot

1369 these up on an age scale.

65 Global Change Biology Page 66 of 71

100°N 104°N 108°N 112°N

56°E Upper Upper Angara

Lake Baikal Barguzin Lower Angara

52°E Irkutsk

Selenga

48°E Ulan Bator

0 200km

North Basin

St.6GC Ver94.St.16

St.5PC St.5GC Academician Ridge

Barguzin River

Central Basin BDP-93-2 Ver93/2-GC24 Buguldieka Saddle

Angara

Selenga River

South Basin N CON01-605 Vydrino Shoulder

0 100km Pagee 67 of 71 Global Changeacc.shape: Biology 1.5 mem.strength: 4 acc.mean: 50 4 mem.mean: 0.7 38 5cm sections 3 −70 0.010 2 1 Log of Objecti v −85 0

0 4000 8000 0.000 0 100 300 0.0 0.4 0.8 Iteration Acc. rate (yr/cm) Memory

12000 VydrinoK 10000 8000 6000 cal yr BP 4000 2000 0

0 50 100 150 Depth (cm) (m) (a) (e) (g) (c) (k) (i)

13 - 2 - 1 % Arboreal Pollen Pollen PC1 %TOC δ C (‰) DCF (cm y r ) CO2 p.p.m.v. 90-30°N T anomaly (°C) 25 45 65 85 -0.4 -0.2 0.0 0.2 1.0 1.4 1.8 2.2 2.6 3.0 -27 -28 -29 -30 -31 0 1000000 2000000 255 265 275 285 -1.0 0.0 1.0 2.0 1 2

3 2.8 4 4.1 5 k y r

B 6 P 7 8 8.2 9 10 10.3 Global ChangeBiology 11

0 20 40 60 80 10 0 16 32 48 9 10 11 12 13 14 1.5 4.5 7.5 10.5 13.5 0 1000000 2000000 -6.2 -6.4 -6.6 -6.8 450 460 470 480 490 500 -2 -1 -2 -1 % PinSylv steppe - forest index C/N CMAR (g C m y r ) Benthic flux (cm yr ) δ13C (‰ VPDB) Jul Insolation 50°N (h) (j) (n) (b) (d) (f) (l) Page 68of71 Page 69of71 (g) (e) (d) (b) (a) (c) (f) k k k k k k k 20 10 45 35 25 15 45 35 25 15 30 20 10 80 70 60 50 40 30 20 10 80 70 60 50 40 30 20 10 80 70 60 50 40 30 20 10 1000 1000 1000 1000 1000 1000 1000 2000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 3000 3000 3000 4000 4000 4000 4000 4000 4000 4000 5000 5000 5000 5000 5000 5000 5000 Benthic CellFLux Age (calyrBP) Diatom CellFlux 6000 6000 6000 6000 6000 6000 6000 CMAR %T C/N PC1 δ OC 13 C 7000 7000 7000 7000 7000 7000 7000 8000 8000 8000 8000 8000 8000 8000 Global ChangeBiology 9000 9000 9000 9000 9000 9000 9000 10000 10000 10000 10000 10000 10000 10000 11000 11000 11000 11000 11000 11000 11000 Early Holocene Global Change Biology Page 70 of 71 (a) (b) (c) (d)

−3.6 p = 0.026 p < 0.001 p = 0.739 p = 0.043 2.60 −27.5

2.4 C 2.50 −4.0

13 CN TOC 2.0 δ −29.0 CMAR 2.40

1.6 −4.4 2.30 −30.5

−0.3 −0.1 0.1 −0.3 −0.1 0.1 −0.3 −0.1 0.1 −0.3 −0.1 0.1

PC1 PC1 PC1 PC1

Late Holocene (e) (f) (g) (h) p = 0.2 p = 0.372 p = 0.036 p = 0.089

−3.6 1.8 2.50 C 13 −28.5 CN TOC δ −4.0

CMAR 1.4 2.40 −30.0 −4.4 2.30 1.0

0.05 0.10 0.15 0.20 0.05 0.10 0.15 0.20 0.05 0.10 0.15 0.20 0.05 0.10 0.15 0.20

PC1 PC1 PC1 PC1 Page 71of (i) (q) (o) (m) (g) (c) (k) (e) (a)

sunspot number dev-%TOC dev- 1 3 C ‰ Baikal δ 1 8 Odiatom ‰ Tibet Dust (103 ml-1) Huascaran dust (ml-1) Red Sea δ 1 8 O ‰ NW India δ 1 8 O ‰ SE China δ 1 8 O ‰ -10 20 50 80 110 -0.8 -0.4 0.0 0.4 0.8 3 2 1 0 -1 -2 22.5 27.5 32.5 37.5 2000 1000 0 50000 1000 1 0 -1 -2 8 3 -3 -8 -6 -7 -8 -9 -10 500 1 1000 1500 2002 0 2500 3003 0 2.8 3500 4 4000 4.1 4500 5005 0 k

y 5500 r 6

B 6000

P 6500 7007 0 7500

8008 0 8.2 8500

9009 0 9500 10 10000 10.3 10500 11 11000 10.8 11500 Global ChangeBiology 0 8 16 24 32 -2 -1 0 1 2 3 -5 -2 2 5 8 20 15 10 5 0 100000 1000 24 20 16 12 8 4 12 10 7 5 2 0 -3 -4 -5 -6 -7 -8 GISP2 K+ (ppb) dev-CN dev-CMAR %HSG Kilimanjaro dust (ml-1) Red Sea [Mn] Oman Dolomite % NE India δ 1 8 O ‰ (d) (f) (b) (h) (n) (l) (p) (j)