Bisnorgammacerane Traces Predatory Pressure and the Persistent Rise of Algal Ecosystems After Snowball Earth
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Synthesis and Applications of Monolithic HPLC Columns
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 8-2005 Synthesis and Applications of Monolithic HPLC Columns Chengdu Liang University of Tennessee - Knoxville Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Part of the Chemistry Commons Recommended Citation Liang, Chengdu, "Synthesis and Applications of Monolithic HPLC Columns. " PhD diss., University of Tennessee, 2005. https://trace.tennessee.edu/utk_graddiss/2233 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Chengdu Liang entitled "Synthesis and Applications of Monolithic HPLC Columns." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Doctor of Philosophy, with a major in Chemistry. Georges A Guiochon, Major Professor We have read this dissertation and recommend its acceptance: Sheng Dai, Craig E Barnes, Michael J Sepaniak, Bin Hu Accepted for the Council: Carolyn R. Hodges Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) To the Graduate Council: I am submitting herewith a dissertation written by Chengdu Liang entitled, “Synthesis and applications of monolithic HPLC columns.” I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Doctor of Philosophy, with a major in Chemistry. -
(LC-MS/MS) Method for the Determination of NDMA in Ranitidine Drug Substance and Solid Dosage Drug Product
10/17/2019 Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) Method for the Determination of NDMA in Ranitidine Drug Substance and Solid Dosage Drug Product Background: Ranitidine is a prescription and over-the-counter drug used to treat acid reflux. The drug is a histamine-2 receptor antagonist (acid inhibitor or H2 blocker). Some of the common H2 receptor blockers include: Ranitidine (Zantac), Nizatidine (Axid), Famotidine (Pepcid, Pepcid AC) and Cimetidine (Tagamet, Tagamet HB). Ranitidine medicine was suspected of being contaminated with N-nitroso-di-methylamine (NDMA), a probable human carcinogen, following notification in June 2019. Accordingly, a liquid chromatography-high resolution mass spectrometry (LC-HRMS) method was developed and validated by the Agency to determine the level of NDMA in ranitidine drug products and drug substances. This method is a liquid chromatography-tandem mass spectrometry (LC-MS/MS) method for the determination of NDMA in ranitidine drug substance and drug product. This LC-MS method based on a QQQ platform may be used as an alternative or confirmatory method for the liquid chromatography high resolution mass spectrometry (LC-HRMS) method detailed in FY19-177- DPA-S. The QQQ platform is more widely available than the LC-HRMS platform previously shared by the agency. Conclusions: An LC-MS/MS method was developed and validated following ICH Q2 (R1) for the detection and quantitation of NDMA in Ranitidine drug substance and drug product. The limit of detection (LOD), limit of quantitation (LOQ) and range of the method are summarized below: NDMA LOD (ng/mL) 0.3 (ppm) 0.01 LOQ (ng/mL) 1.0 (ppm) 0.033 Range (ng/mL) 1.0 - 100 (ppm) 0.033 – 3.33 Page 1 of 7 10/17/2019 LC-MS/MS Method for the Determination of NDMA impurity in Ranitidine Drug Substance or Solid Dosage Drug Product Purpose This method is used to quantitate N-nitroso-di-methylamine (NDMA) impurity in ranitidine drug substance or solid dosage drug product. -
Laser-Induced Dissociation of Phosphorylated Peptides Using
09_Cotter 10/19/07 7:57 AM Page 133 Clinical Proteomics Copyright © 2006 Humana Press Inc. All rights of any nature whatsoever are reserved. ISSN 1542-6416/06/02:133–144/$30.00 (Online) Original Article Laser-Induced Dissociation of Phosphorylated Peptides Using Matrix Assisted Laser Desorption/Ionization Tandem Time-of-Flight Mass Spectrometry Dongxia Wang,1 Philip A. Cole,2 and Robert J. Cotter2,* 1Biotechnology Core Facility, National Center for Infectious Disease, Center for Disease Control and Prevention, Atlanta, GA; 2Department of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine, Baltimore, MD site or concensus sequence is present in a given Abstract tryptic peptide. Here, we investigated the frag- Reversible phosphorylation is one of the mentation of phosphorylated peptides under most important posttranslational modifications laser-induced dissociation (LID) using a of cellular proteins. Mass spectrometry is a MALDI-time-of-flight mass spectrometer with a widely used technique in the characterization of curved-field reflectron. Our data demonstrated phosphorylated proteins and peptides. Similar that intact fragments bearing phosphorylated to nonmodified peptides, sequence information residues were produced from all tested peptides for phosphopeptides digested from proteins can that contain at least one and up to four be obtained by tandem mass analysis using phosphorylation sites at serine, threonine, or either electrospray ionization or matrix assisted tyrosine residues. In addition, the LID of laser desorption/ionization (MALDI) mass phosphopeptides derivatized by N-terminal spectrometry. However, the facile loss of neutral sulfonation yields simplified MS/MS spectra, phosphoric acid (H3PO4) or HPO3 from precur- suggesting the combination of these two types sor ions and fragment ions hampers the precise of spectra could provide an effective approach determination of phosphorylation site, particu- to the characterization of proteins modified by larly if more than one potential phosphorylation phosphorylation. -
Chapter 15 Liquid Chromatography
Chapter 15 Liquid Chromatography Problem 15.1: Albuterol (a drug used to fight asthma) has a lipid:water KOW (see “Profile—Other Applications of Partition Coefficients”) value of 0.019. How many grams of albuterol would remain in the aqueous phase if 0.001 grams of albuterol initially in a 100 mL aqueous solution were allowed to come into equilibrium with 100 mL of octanol? C (aq) ⇌ C (org) Initial (g) 0.001 g 0 Change -y +y Equil 0.001-y y 푦 100 푚퐿 퐾푂푊 = 0.019 = (0.001−푦) ⁄100푚퐿 1.9 x 10-5 – 0.019y = y 1.019y = 1.9 x 10-5 y = 1.864x10-5 g albuterol would be in the octanol layer Problem 15.2: (a) Repeat Problem 15.1, but instead of extracting the albuterol with 100 mL of octanol, extract the albuterol solution five successive times with only 20 mL of octanol per extraction. After each step, use the albuterol remaining in the aqueous phase from the previous step as the starting quantity for the next step. (Note: the total volume of octanol is the same in both extractions). (b) Compare the final concentration of aqueous albuterol to that obtained in Problem 15.1. Discuss how the extraction results changed by conducting five smaller extractions instead of one large one. What is the downside to the multiple smaller volume method in this exercise compared to the single larger volume method in Problem 15.1? 푦 (a) Each step will have this general form of calculation: 퐾 = 20 푚퐿 푂푊 (푔푖푛푖푡−푦) ⁄100푚퐿 (퐾 )(푔 ) so we can calculate the g transferred to octanol from 푦 = 푂푊 푖푛푖푡 5+퐾푂푊 We can use a spreadsheet to calculate the successive steps: First extraction: -
An Organic Chemist's Guide to Electrospray Mass Spectrometric
molecules Review An Organic Chemist’s Guide to Electrospray Mass Spectrometric Structure Elucidation Arnold Steckel 1 and Gitta Schlosser 2,* 1 Hevesy György PhD School of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary; [email protected] 2 Department of Analytical Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary * Correspondence: [email protected] Received: 16 January 2019; Accepted: 8 February 2019; Published: 10 February 2019 Abstract: Tandem mass spectrometry is an important tool for structure elucidation of natural and synthetic organic products. Fragmentation of odd electron ions (OE+) generated by electron ionization (EI) was extensively studied in the last few decades, however there are only a few systematic reviews available concerning the fragmentation of even-electron ions (EE+/EE−) produced by the currently most common ionization techniques, electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI). This review summarizes the most important features of tandem mass spectra generated by collision-induced dissociation fragmentation and presents didactic examples for the unexperienced users. Keywords: tandem mass spectrometry; MS/MS fragmentation; collision-induced dissociation; CID; ESI; structure elucidation 1. Introduction Electron ionization (EI), a hard ionization technique, is the method of choice for analyses of small (<1000 Da), nonpolar, volatile compounds. As its name implies, the technique involves ionization by electrons with ~70 eV energy. This energy is high enough to yield very reproducible mass spectra with a large number of fragments. However, these spectra frequently lack the radical type molecular ions (M+) due to the high internal energy transferred to the precursors [1]. -
An Introduction to Chromatography
Classification of Chromatographic Methods Classification of Chromatographic Methods (Geometry) •Planar –Paper – Thin layer • Column –GC –HPLC –IC – SFC Classification of Chromatographic Methods (Mobile Phase) • Gas Chromatography • Liquid Chromatography • Supercritical Fluid Chromatography Classification of Chromatographic Methods (Stationary Phase) • Adsorption • Partition • Ion-Exchange • Molecular Exclusion • Affinity Example of Affinity Chromatography Purification of monoclonal antibody on a 5 cm x 4.6 mm column with protein A covalently attached to a polymer support A Hot Idea: Molecular Imprinting An “artificial antibody” can be constructed by synthesizing a polymer in the presence of a template molecule. When the template is removed, the polymer is “imprinted” with the shape of the template and with complementary functional groups that can bind to the template. The imprinted polymer can be used as a stationary phase in affinity chromatography. Molecular Imprinting Hydrophobic Interaction Chromatography (HIC) • Based on the interaction of a hydrophobic stationary phase with a hydrophobic region of a solute such as a protein • A protein can have hydrophilic regions that make it soluble in water and hydrophobic regions interacting with a hydrophobic stationary phase • Proteins are adsorbed on the hydrophobic surface when the aqueous mobile phase contains high salt concentration • Eluent strength is increased by decreasing the salt concentration Hydrophilic Interaction Chromatography (HILIC) • Most useful for small molecules too polar to be retained by reversed-phase HPLC • Stationary phases are strongly polar • The mobile phase contains ≥ 80% polar organic solvent mixed with water Hydrophilic Interaction Chromatography (cont.) • Solute equilibrates between the mobile phase and a layer of aqueous phase on the surface of the stationary phase • Eluent strength is increased by increasing the fraction of water in the mobile phase. -
9.2.3.7 Retention Parameters in Column Chromatography
9.2.3.7 Retention Parameters in Column Chromatography Retention parameters may be measured in terms of chart distances or times, as well as mobile phase volumes; e.g., tR' (time) is analogous to VR' (volume). If recorder speed is constant, the chart distances are directly proportional to the times; similarly if the flow rate is constant, the volumes are directly proportional to the times. Note: In gas chromatography, or in any chromatography where the mobile phase expands in the column, VM, VR and VR' represent volumes under column outlet pressure. If Fc, the carrier gas flow rate at the column outlet and corrected to column temperature (see Flow Rate), is used in calculating the retention volumes from the retention time values, these correspond to volumes at column temperatures. The various conditions under which retention volumes (times) are expressed are indicated by superscripts: thus, a prime ('; as in VR') refers to correction for the hold-up volume (and time) while a circle (º; as in VRº) refers to correction for mobile-phase compression. In the case of the net retention volume (time) both corrections should be applied: however, in order not to confuse the symbol by the use of a double superscript, a new symbol (VN, tN) is used for the net retention volume (time). Hold-up Volume (Time) (VM, tM ) The volume of the mobile phase (or the corresponding time) required to elute a component the concentration of which in the stationary phase is negligible compared to that in the mobile phase. In other words, this component is not retained at all by the stationary phase. -
Rapid Liquid Chromatography–Tandem Mass Spectrometry-Based Method
Rapid liquid chromatography-tandem mass spectrometry- based method for the analysis of alcohol ethoxylates and alkylphenol ethoxylates in environmental samples Authors: Patrick D. DeArmond1* and Amanda L. DiGoregorio2 1United States Environmental Protection Agency, Office of Research and Development, National Exposure Laboratory, Environmental Sciences Division, 944 E. Harmon Ave., Las Vegas, NV 89119 2Student Services Contractor, United States Environmental Protection Agency, 944 E. Harmon Ave., Las Vegas, NV 89119 *Correspondence. Email address: [email protected] (B. Schumacher) Accepted for publication in the Journal of Chromatography A. in July 2013. Final version published as: DeArmond P.D., DiGoregorio A.L. Rapid liquid chromatography-tandem mass spectrometry-based method for the analysis of alcohol ethoxylates and alkylphenol ethoxylates in environmental samples. Journal of Chromatography A, Aug 30; 1305: 154-63 (2013). Abstract A sensitive and selective method for the determination of alcohol ethoxylates (AEOs) and alkylphenol ethoxylates (APEOs) using solid-phase extraction (SPE) and LC-MS/MS was developed and applied to the analysis of water samples. All AEO and APEO homologues, a total of 152 analytes, were analyzed within a run time of 11 min, and the MS allowed for the detection of ethoxymers containing 2- 20 ethoxy units (nEO = 2-20). The limits of detection (LOD) were as low as 0.1 pg injected, which generally increased as nEO increased. Additionally, the responses of the various ethoxymers varied by orders of magnitude, with ethoxymers with nEO = 3-5 being the most sensitive and those with nEO > 15 producing the least response in the MS. Absolute extraction recoveries of the analytes ranged from 37% to 69%, with the recovery depending on the length of the alkyl chain. -
Gas Chromatography-High Resolution Tandem Mass Spectrometry Using
Chemistry Publications Chemistry 2012 Gas Chromatography-High Resolution Tandem Mass Spectrometry Using a GC-APPI-LIT Orbitrap for Complex Volatile Compounds Analysis Young Jin Lee Iowa State University, [email protected] Erica A. Smith Iowa State University Ji Hyun Jun Iowa State University, [email protected] Follow this and additional works at: http://lib.dr.iastate.edu/chem_pubs Part of the Analytical Chemistry Commons The ompc lete bibliographic information for this item can be found at http://lib.dr.iastate.edu/ chem_pubs/897. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Article is brought to you for free and open access by the Chemistry at Iowa State University Digital Repository. It has been accepted for inclusion in Chemistry Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Gas Chromatography-High Resolution Tandem Mass Spectrometry Using a GC-APPI-LIT Orbitrap for Complex Volatile Compounds Analysis Abstract A new approach of volatile compounds analysis is proposed using a linear ion trap Orbitrap mass spectrometer coupled with gas chromatography through an atmospheric pressure photoionization interface. In the proposed GC-HRMS/MS approach, direct chemical composition analysis is made for the precursor ions in high resolution MS spectra and the structural identifications were made through the database search of high quality MS/MS spectra. Successful analysis of a complex perfume sample was demonstrated and compared with GC-EI-Q and GC-EI-TOF. The current approach is complementary to conventional GC-EI- MS analysis and can identify low abundance co-eluting compounds. -
A Squalene-Hopene Cyclase in Schizosaccharomyces Japonicus Represents a Eukaryotic Adaptation to Sterol-Independent Anaerobic Gr
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.17.435848; this version posted March 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 A squalene‐hopene cyclase in Schizosaccharomyces japonicus represents a 2 eukaryotic adaptation to sterol‐independent anaerobic growth 3 Jonna Bouwknegta,1, Sanne J. Wiersmaa,1, Raúl A. Ortiz-Merinoa, Eline S. R. Doornenbala, 4 Petrik Buitenhuisa, Martin Gierab, Christoph Müllerc, and Jack T. Pronka,* 5 6 aDepartment of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The 7 Netherlands 8 bCenter for Proteomics and Metabolomics, Leiden University Medical Center, 233 3ZA Leiden, The 9 Netherlands 10 cDepartment of Pharmacy, Center for Drug Research, Ludwig-Maximillians University Munich, 11 Butenandtstraße 5-13, 81377 Munich, Germany 12 13 * Corresponding author: Jack T. Pronk 14 Email: [email protected]; Telephone: +31 15 2782416 15 1These authors have contributed equally to this work, and should be considered co-first authors 16 17 Author Contributions: JB, SJW and JTP designed experiments and wrote the draft manuscript. JB, SJW, 18 RAOM, ESRD, PB, MG and CM performed experiments. JB, SJW, RAOM, MG and CM analyzed data. All authors 19 have read and approved of the final manuscript. 20 21 Competing Interest Statement: JB, SJW and JTP are co-inventors on a patent application that covers parts 22 of this work. -
Wcbp 2015 Abstracts Session I Friday Evening
WCBP 2015 ABSTRACTS SESSION I FRIDAY EVENING String Me Along: Extracellular Electron Transfer in Microbial Redox Chains Moh El-Naggar, Robert D. Beyer Early Career Chair in Natural Sciences Department of Physics and Astronomy; Department of Biological Sciences; Department of Chemistry, University of Southern California Electron Transfer is the stuff of life. The stepwise movement of electrons within and between molecules dictates all biological energy conversion strategies, including respiration and photosynthesis. With such a universal role across all domains of life, the fundamentals of ET and its precise impact on bioenergetics have received considerable attention, and the broad mechanisms allowing ET over small length scales in biomolecules are now well appreciated. Coherent tunneling is a critical mechanism that allows ET between cofactors separated by nanometer length scales, while incoherent hopping describes transport across multiple cofactors distributed within membranes. In what has become an established pattern, however, our planet’s oldest and most versatile organisms are now challenging our current state of knowledge. With the discovery of bacterial nanowires and multicellular bacterial cables, the length scales of microbial ET observations have jumped by 7 orders of magnitude, from nanometers to centimeters, during the last decade alone! This talk will take stock of where we are and where we are heading as we come to grips with the basic mechanisms and immense implications of microbial long-distance electron transport. We will focus on the biophysical and structural basis of long-distance, fast, extracellular electron transport by metal-reducing bacteria. These remarkable organisms have evolved direct charge transfer mechanisms to solid surfaces outside the cells, allowing them to use abundant minerals as electron acceptors for respiration, instead of oxygen or other soluble oxidants that would normally diffuse inside cells. -
Utilizing a Hybrid Mass Spectrometer to Enable Fundamental Protein Characterization: Intact Mass Analysis and Top-Down Fragmentation with the LTQ Orbitrap MS
Application Note: 498 Utilizing a Hybrid Mass Spectrometer to Enable Fundamental Protein Characterization: Intact Mass Analysis and Top-Down Fragmentation with the LTQ Orbitrap MS Tonya Pekar Second, Vlad Zabrouskov, Thermo Fisher Scientific, San Jose, CA, USA Alexander Makarov, Thermo Fisher Scientific, Bremen, Germany Introduction Experimental Key Words A fundamental stage in protein characterization is to Protein standards, including bovine carbonic anhydrase, • LTQ Orbitrap Velos determine and verify the intact state of the macromolecule. yeast enolase, bovine transferrin and human monoclonal This is often accomplished through the use of mass IgG, were purchased from Sigma-Aldrich. For direct • LTQ Orbitrap XL spectrometry (MS) to first detect and measure the molecular infusion, proteins in solution were purified by either a • Applied mass. Beyond confirmation of intact mass, the next objective Thermo Scientific Vivaspin centrifugal spin column or a Fragmentation is the verification of its primary structure, the amino acid size-exclusion column (GE Healthcare), employing at least Techniques sequence of the protein. Traditionally, a map of the two rounds of buffer exchange into 10 mM ammonium macromolecule is reconstructed from matching masses of acetate. Protein solutions were at a concentration of least • Electron Transfer peptide fragments produced through external enzymatic 1 mg/mL prior to clean-up. Samples were diluted into Dissociation ETD digestion of the protein to masses calculated from an in 50:50:0.1 acetonitrile:water:formic acid prior to infusion silico • Top-Down digest of the target protein sequence. A more direct into the mass spectrometer. Instrument parameters were approach involves top-down MS/MS of the intact protein altered during infusion of protein solutions to optimize the Proteomics molecular ion.