Neuroanatomy of a Hydrothermal Vent Shrimp Provides Insights Into The
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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
DNA Barcoding of the Marine Protected Species Chasmagnathus Convexus (Decapoda: Varunidae: Chasmagnathus) in Korea
Anim. Syst. Evol. Divers. Vol. 37, No. 2: 177-181, April 2021 https://doi.org/10.5635/ASED.2021.37.2.084 Short communication DNA Barcoding of the Marine Protected Species Chasmagnathus convexus (Decapoda: Varunidae: Chasmagnathus) in Korea Woo Yong Choi1, Chang Ho Yi1, Ji Min Kim1,2, So Yeon Kim3, Hyoung Seop Kim2, Min-Seop Kim1,* 1National Marine Biodiversity Institute of Korea, Seocheon 33662, Korea 2School of Marine Biotechnology, College of Marine Science, Kunsan National University, Gunsan 54150, Korea 3Korea Fisheries Resources Agency, Gunsan 54021, Korea ABSTRACT Chasmagnathus convexus (De Haan, 1835) is a monotypic species belonging to the family Varunidae. Chasmagnathus convexus has been designated as a marine protected species and endangered species by the Wildlife Protection and Management Act (2005) of Korea due to its declining population in the wild. This declining population is a result of habitat loss and environmental change. This study is the first to research the mitochondrial cytochromec oxidase subunit I (COI) in Korean C. convexus. The maximum intra-specific genetic variation among all C. convexus individuals was 1.8%, while the inter-genetic variation among the five varunid species was in the range of 16.0-23.7%. The COI barcodes will be used as a reference for restoration and conservation studies of Korean C. convexus. Keywords: Chasmagnathus convexus, DNA barcode, cytochrome c oxidase subunit I, marine protected species, endangered species INTRODUCTION habitat loss and environmental changes. DNA barcodes of mitochondrial cytochrome c oxidase The common convex crab Chasmagnathus convexus (De subunit I (COI) are useful markers for differentiating among Haan, 1835) is a monotypic species of the genus Chasmagna several taxonomic groups, including Decapoda (Meyran et al., thus De Haan, 1833. -
Occurrence of Shell Disease and Carapace Abnormalities on Natural
JMBA2 - Biodiversity Records Published on-line Occurrence of shell disease and carapace abnormalities on natural population of Neohelice granulata (Crustacea: Varunidae) from a tropical mangrove forest, Brazil Rafael Augusto Gregati* and Maria Lucia Negreiros Fransozo NEBECC (Group of Studies on Crustacean Biology, Ecology and Culture), Departamento de Zoologia, Instituto de Biociências, Universidade Estadual Paulista (UNESP) 18618-000, Botucatu, SP, Brazil. *Corresponding author, e-mail: [email protected] In this note, we registered the occurrence of shell diseases and carapace abnormalities on a natural population of Neohelice granulata from a tropical mangrove forest, in South America, as a part of a wide ecological study. The occurrence of 32 adult crabs (1.77%) with black or brown spotted shell, or deformities on carapace was registered, collected in the autumn and winter seasons. The low prevalence of shell diseases and abnormalities in this natural population is considered normal and probably caused by injuries occurred during the moult period of crabs. Keywords: Neohelice granulata, shell disease, carapace abnormalities Introduction Shell diseases and external abnormalities or deformities are just one of the common problems affecting freshwater and marine crustaceans. These diseases have been reported in many natural crustacean populations, principally in many species of economic importance such as the Alaskan king crab, portunid crabs, shrimps and lobsters (Maloy, 1978; Sindermann, 1989; Noga et al., 2000). The shell diseases are characterized by various types of erosive lesions on the carapace (Johnson, 1983; Sindermann & Lightner, 1988) and the classical and most common kind of shell disease is know as ‘brown spot’ or ‘black spot’, which consists of various-sized foci of hyperpigmentation (Rosen, 1970; Noga et al., 2000). -
Hydrothermal Vent Fields and Chemosynthetic Biota on the World's
ARTICLE Received 13 Jul 2011 | Accepted 7 Dec 2011 | Published 10 Jan 2012 DOI: 10.1038/ncomms1636 Hydrothermal vent fields and chemosynthetic biota on the world’s deepest seafloor spreading centre Douglas P. Connelly1,*, Jonathan T. Copley2,*, Bramley J. Murton1, Kate Stansfield2, Paul A. Tyler2, Christopher R. German3, Cindy L. Van Dover4, Diva Amon2, Maaten Furlong1, Nancy Grindlay5, Nicholas Hayman6, Veit Hühnerbach1, Maria Judge7, Tim Le Bas1, Stephen McPhail1, Alexandra Meier2, Ko-ichi Nakamura8, Verity Nye2, Miles Pebody1, Rolf B. Pedersen9, Sophie Plouviez4, Carla Sands1, Roger C. Searle10, Peter Stevenson1, Sarah Taws2 & Sally Wilcox11 The Mid-Cayman spreading centre is an ultraslow-spreading ridge in the Caribbean Sea. Its extreme depth and geographic isolation from other mid-ocean ridges offer insights into the effects of pressure on hydrothermal venting, and the biogeography of vent fauna. Here we report the discovery of two hydrothermal vent fields on theM id-Cayman spreading centre. The Von Damm Vent Field is located on the upper slopes of an oceanic core complex at a depth of 2,300 m. High-temperature venting in this off-axis setting suggests that the global incidence of vent fields may be underestimated. At a depth of 4,960 m on the Mid-Cayman spreading centre axis, the Beebe Vent Field emits copper-enriched fluids and a buoyant plume that rises 1,100 m, consistent with > 400 °C venting from the world’s deepest known hydrothermal system. At both sites, a new morphospecies of alvinocaridid shrimp dominates faunal assemblages, which exhibit similarities to those of Mid-Atlantic vents. 1 National Oceanography Centre, Southampton, UK. -
From Ghost and Mud Shrimp
Zootaxa 4365 (3): 251–301 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2017 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4365.3.1 http://zoobank.org/urn:lsid:zoobank.org:pub:C5AC71E8-2F60-448E-B50D-22B61AC11E6A Parasites (Isopoda: Epicaridea and Nematoda) from ghost and mud shrimp (Decapoda: Axiidea and Gebiidea) with descriptions of a new genus and a new species of bopyrid isopod and clarification of Pseudione Kossmann, 1881 CHRISTOPHER B. BOYKO1,4, JASON D. WILLIAMS2 & JEFFREY D. SHIELDS3 1Division of Invertebrate Zoology, American Museum of Natural History, Central Park West @ 79th St., New York, New York 10024, U.S.A. E-mail: [email protected] 2Department of Biology, Hofstra University, Hempstead, New York 11549, U.S.A. E-mail: [email protected] 3Department of Aquatic Health Sciences, Virginia Institute of Marine Science, College of William & Mary, P.O. Box 1346, Gloucester Point, Virginia 23062, U.S.A. E-mail: [email protected] 4Corresponding author Table of contents Abstract . 252 Introduction . 252 Methods and materials . 253 Taxonomy . 253 Isopoda Latreille, 1817 . 253 Bopyroidea Rafinesque, 1815 . 253 Ionidae H. Milne Edwards, 1840. 253 Ione Latreille, 1818 . 253 Ione cornuta Bate, 1864 . 254 Ione thompsoni Richardson, 1904. 255 Ione thoracica (Montagu, 1808) . 256 Bopyridae Rafinesque, 1815 . 260 Pseudioninae Codreanu, 1967 . 260 Acrobelione Bourdon, 1981. 260 Acrobelione halimedae n. sp. 260 Key to females of species of Acrobelione Bourdon, 1981 . 262 Gyge Cornalia & Panceri, 1861. 262 Gyge branchialis Cornalia & Panceri, 1861 . 262 Gyge ovalis (Shiino, 1939) . 264 Ionella Bonnier, 1900 . -
New Insights from the Neuroanatomy of Parhyale Hawaiensis
bioRxiv preprint doi: https://doi.org/10.1101/610295; this version posted April 18, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The “amphi”-brains of amphipods: New insights from the neuroanatomy of Parhyale hawaiensis (Dana, 1853) Christin Wittfoth, Steffen Harzsch, Carsten Wolff*, Andy Sombke* Christin Wittfoth, University of Greifswald, Zoological Institute and Museum, Dept. of Cytology and Evolutionary Biology, Soldmannstr. 23, 17487 Greifswald, Germany. https://orcid.org/0000-0001-6764-4941, [email protected] Steffen Harzsch, University of Greifswald, Zoological Institute and Museum, Dept. of Cytology and Evolutionary Biology, Soldmannstr. 23, 17487 Greifswald, Germany. https://orcid.org/0000-0002-8645-3320, sharzsch@uni- greifswald.de Carsten Wolff, Humboldt University Berlin, Dept. of Biology, Comparative Zoology, Philippstr. 13, 10115 Berlin, Germany. http://orcid.org/0000-0002-5926-7338, [email protected] Andy Sombke, University of Vienna, Department of Integrative Zoology, Althanstr. 14, 1090 Vienna, Austria. http://orcid.org/0000-0001-7383-440X, [email protected] *shared last authorship ABSTRACT Background Over the last years, the amphipod crustacean Parhyale hawaiensis has developed into an attractive marine animal model for evolutionary developmental studies that offers several advantages over existing experimental organisms. It is easy to rear in laboratory conditions with embryos available year- round and amenable to numerous kinds of embryological and functional genetic manipulations. However, beyond these developmental and genetic analyses, research on the architecture of its nervous system is fragmentary. -
Pleomothra Apletocheles and Godzilliognomus Frondosus, Two New Genera and Species of Remipede Crustaceans (Godzilliidae) from Anchialine Caves of the Bahamas
BULLETIN OF MARINE SCIENCE, 44(3): 1195-1206, 1989 CORAL REEF PAPER PLEOMOTHRA APLETOCHELES AND GODZILLIOGNOMUS FRONDOSUS, TWO NEW GENERA AND SPECIES OF REMIPEDE CRUSTACEANS (GODZILLIIDAE) FROM ANCHIALINE CAVES OF THE BAHAMAS Jill Yager ABSTRACT Two new genera and species of the crustacean class Remipedia, Pleornothra apletocheles and Godzi/liognornus frondosus, are described from anchialine caves on Abaco and Grand Bahama Island in the northern Bahamas. The new taxa are placed in the family Godzilliidae. The familial characters are revised, and a key to all species is included. Extensive collecting efforts in anchialine caves of the West Indies and along the coast of Quintana Roo, Mexico, have produced a number of interesting crustacean species (Bowman, 1987; Holsinger and Yager, 1985; Yager, 1987b). Recent field studies in the Bahamas have resulted in the collection of two new genera and species of the crustacean class Remipedia. These new taxa are described below. Their description brings the total number ofremipede species to nine. These new genera differ markedly from remipedes in the family Speleonectidae Yager (1981) and are placed in the family Godzilliidae (Schram et aI., 1986). Because the diagnosis ofthis family was originally based on a single species from caves in The Turks and Caicos (Yager and Schram, 1986), discovery of these new taxa requires expanding the familial definition. In addition, a key to the nine described species of remipedes is given below. The Bahamian archipelago is an area rich in drowned karst. Anchialine caves are submerged caves characterized by having inland surface openings and sub- surface connections to the nearby sea, These caves are very common throughout the Bahamian island chain. -
Metabarcoding in the Abyss: Uncovering Deep-Sea Biodiversity Through Environmental
Metabarcoding in the abyss : uncovering deep-sea biodiversity through environmental DNA Miriam Isabelle Brandt To cite this version: Miriam Isabelle Brandt. Metabarcoding in the abyss : uncovering deep-sea biodiversity through environmental DNA. Agricultural sciences. Université Montpellier, 2020. English. NNT : 2020MONTG033. tel-03197842 HAL Id: tel-03197842 https://tel.archives-ouvertes.fr/tel-03197842 Submitted on 14 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITÉ DE M ONTPELLIER En Sciences de l'Évolution et de la Biodiversité École doctorale GAIA Unité mixte de recherche MARBEC Pourquoi Pas les Abysses ? L’ADN environnemental pour l’étude de la biodiversité des grands fonds marins Metabarcoding in the abyss: uncovering deep - sea biodiversity through environmental DNA Présentée par Miriam Isabelle BRANDT Le 10 juillet 2020 Sous la direction de Sophie ARNAUD-HAOND et Daniela ZEPPILLI Devant le jury composé de Sofie DERYCKE, Senior researcher/Professeur rang A, ILVO, Belgique Rapporteur -
Stomatopoda (Crustacea: Hoplocarida) from the Shallow, Inshore Waters of the Northern Gulf of Mexico (Apalachicola River, Florida to Port Aransas, Texas)
Gulf and Caribbean Research Volume 16 Issue 1 January 2004 Stomatopoda (Crustacea: Hoplocarida) from the Shallow, Inshore Waters of the Northern Gulf of Mexico (Apalachicola River, Florida to Port Aransas, Texas) John M. Foster University of Southern Mississippi, [email protected] Brent P. Thoma University of Southern Mississippi Richard W. Heard University of Southern Mississippi, [email protected] Follow this and additional works at: https://aquila.usm.edu/gcr Part of the Marine Biology Commons Recommended Citation Foster, J. M., B. P. Thoma and R. W. Heard. 2004. Stomatopoda (Crustacea: Hoplocarida) from the Shallow, Inshore Waters of the Northern Gulf of Mexico (Apalachicola River, Florida to Port Aransas, Texas). Gulf and Caribbean Research 16 (1): 49-58. Retrieved from https://aquila.usm.edu/gcr/vol16/iss1/7 DOI: https://doi.org/10.18785/gcr.1601.07 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf and Caribbean Research by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Gulf and Caribbean Research Vol 16, 49–58, 2004 Manuscript received December 15, 2003; accepted January 28, 2004 STOMATOPODA (CRUSTACEA: HOPLOCARIDA) FROM THE SHALLOW, INSHORE WATERS OF THE NORTHERN GULF OF MEXICO (APALACHICOLA RIVER, FLORIDA TO PORT ARANSAS, TEXAS) John M. Foster, Brent P. Thoma, and Richard W. Heard Department of Coastal Sciences, The University of Southern Mississippi, 703 East Beach Drive, Ocean Springs, Mississippi 39564, E-mail [email protected] (JMF), [email protected] (BPT), [email protected] (RWH) ABSTRACT Six species representing the order Stomatopoda are reported from the shallow, inshore waters (passes, bays, and estuaries) of the northern Gulf of Mexico limited to a depth of 10 m or less, and by the Apalachicola River (Florida) in the east and Port Aransas (Texas) in the west. -
Pancrustacean Phylogeny in the Light of New Phylogenomic Data
MBE Advance Access published November 1, 2011 Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda Research Article Downloaded from Bjoern M von Reumont1§, Ronald A Jenner2, Matthew A Wills3, Emiliano 4 4 5 6 Dell’Ampio , Günther Pass , Ingo Ebersberger , Benjamin Meyer , Stefan http://mbe.oxfordjournals.org/ Koenemann7, Thomas M Iliffe8, Alexandros Stamatakis9, Oliver Niehuis1, Karen Meusemann1, Bernhard Misof 1 at Vienna University Library on November 11, 2011 1 Zoologisches Forschungsmuseum Alexander Koenig, Adenauerallee 160, D-53113 Bonn, Germany 2 Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom 3 Department of Biology and Biochemistry, University of Bath, The Avenue, Claverton Down, BA2 7AY, UK, Bath, United Kingdom 4 Department of Evolutionary Biology, University of Vienna, Althanstraße 14, A- 1090, Vienna, Austria 5 Center for Integrative Bioinformatics Vienna (CIBIV), University of Vienna, Medical University of Vienna, University of Veterinary Medicine Vienna, Dr. Bohrgasse 9, A-1030 Vienna, Austria 6 Biozentrum Grindel und Zoologisches Museum, Universität Hamburg, Martin- Luther-King Platz 3, D-20146 Hamburg, Germany - 1 - Ó The Author 2011. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: [email protected] 7 Section Biology, Science and Technology, University of Siegen, Adolf-Reichwein- Straße -
Crustacea; Decapoda; Caridea; Alvinocarididae; Alvinocaris; New Species; Cold Seeps; Blake Ridge; Northwestern Atlantic
Zootaxa 1019: 27–42 (2005) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1019 Copyright © 2005 Magnolia Press ISSN 1175-5334 (online edition) A new species of Alvinocaris (Crustacea: Decapoda: Caridea: Alvi- nocarididae) and a new record of A. muricola from methane seeps on the Blake Ridge Diapir, Northwestern Atlantic T. KOMAI1, T. M. SHANK 2 & C. L. VAN DOVER3 1 Natural History Museum and Institute, Chiba, 955-2 Aoba-cho, Chuo-ku, Chiba, 260-8682 Japan; [email protected] 2 Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, U.S.A. 3 Biology Department, College of William & Mary, Williamsburg, VA 23187, U.S.A. Abstract Two species of the alvinocaridid shrimp genus Alvinocaris, A. methanophila n. sp. and A. muricola Williams, are reported from a cold seep site on the Blake Ridge Diapir, northwestern Atlantic, at a depth of 2155 m. Alvinocaris methanophila is described and illustrated on the basis of 33 adult specimens. It is most similar to the sympatrically found A. muricola Williams, but differs in the comparatively stout second segment of the antennular peduncle and smaller size at maturity in females. Available data suggest that A. muricola is rare at this site. Brief notes on habitat and distri- bution of the two species are provided. Key words: Crustacea; Decapoda; Caridea; Alvinocarididae; Alvinocaris; new species; cold seeps; Blake Ridge; northwestern Atlantic Introduction Shrimps of the genus Alvinocaris are almost exclusively associated with chemosynthetic communities influenced by hydrothermal vents or hydrocarbon seeps (Komai & Segonzac, 2005). Recently, Escobar-Briones & Villalobos-Hiriart (2003) recorded an indeterminate species of Alvinocaris from non-chemosynthetic environments on the Banco Chinchorro in the northern Caribbean at depths of 176–203 m, although no information on morphol- ogy of the voucher specimens was provided. -
Making Spherical-Harmonics-Based Geometric Morphometrics
Takustr. 7 Zuse Institute Berlin 14195 Berlin Germany YANNIC EGE,CHRISTIAN FOTH,DANIEL BAUM1, CHRISTIAN S. WIRKNER,STEFAN RICHTER Making spherical-harmonics-based Geometric Morphometrics (SPHARM) approachable for 3D images containing large cavity openings using Ambient Occlusion - a study using hermit crab claw shape variability 1 0000-0003-1550-7245 This is a preprint of a manuscript that will appear in Zoomorphology. ZIB Report 20-09 (March 2020) Zuse Institute Berlin Takustr. 7 14195 Berlin Germany Telephone: +49 30-84185-0 Telefax: +49 30-84185-125 E-mail: [email protected] URL: http://www.zib.de ZIB-Report (Print) ISSN 1438-0064 ZIB-Report (Internet) ISSN 2192-7782 Making spherical-harmonics-based Geometric Morphometrics (SPHARM) approachable for 3D images containing large cavity openings using Ambient Occlusion - a study using hermit crab claw shape variability Yannic Ege1, Christian Foth2, Daniel Baum3, Christian S. Wirkner1, Stefan Richter1 1Allgemeine & Spezielle Zoologie, Institut für Biowissenschaften, Universität Rostock, Rostock, Germany 2Department of Geosciences, Université de Fribourg, Fribourg, Switzerland 3ZIB - Zuse Institute Berlin, Berlin, Germany Correspondence : Yannic Ege, Allgemeine & Spezielle Zoologie, Institut für Biowissenschaften, Universität Rostock, Universitätsplatz 2, 18055 Rostock, Germany. E : [email protected] Abstract An advantageous property of mesh-based geometric morphometrics (GM) towards landmark-based approaches, is the possibility of precisely eXamining highly irregular shapes and highly topographic surfaces. In case of spherical-harmonics-based GM the main requirement is a completely closed mesh surface, which often is not given, especially when dealing with natural objects. Here we present a methodological workflow to prepare 3D segmentations containing large cavity openings for the conduction of spherical-harmonics-based GM.