The Anomeric Effect Paul Krawczuk

Total Page:16

File Type:pdf, Size:1020Kb

The Anomeric Effect Paul Krawczuk Wednesday, November 9, 2005 Baran Group Meeting The Anomeric Effect Paul Krawczuk Further Reading: G.R.J. Thatcher (ed.), The Anomeric Effect and Related Stereolectronic Effects. ACS Anomeric Effect Defined (IUPAC): Symposium Series #539, 1993. Review: Juaristi, E., Cuevas, G., Tetrahedron, 1992, 48(24), 5019-5087. Originally defined as the thermodynamic preference for polar groups bonded to C-1 (the anomeric carbon of a glycopyranosyl derivative) to take up an Historical Aspects of the Anomeric Effect axial position. First observed in 1955 by J.T. Edward and in 1958 by R.U. Lemieux. O O Both were studying carbohydrate chemistry and noticed a preference for ~1.5 kcal alkoxy and acetyl groups to reside in the axial position. Edward proposed OR that the lone pairs on the ring oxygen were contributing to the effect. OR -OR has an axial preferecne in a C1 substituted tetrahydropyran alkyl substituted cyclohexanes prefer equitorial orientation over axial R This effect is now considered to be a special case of a general preference R (the generalized anomeric effect) for gauche conformations about the bond C–Y in the system X–C–Y–C where X and Y are heteroatoms O having nonbonding electron pairs, commonly at least one of which alkyl substituted tetrahydropyrans O show this same preference is nitrogen, oxygen, sulfur or fluorine. R Y Y R X Electronegativites X H OH H OH of Relavant Atoms the anomeric carbon of the most H O H O abundant natural sugar, HO HO C 2.5 HO H HO OH S 2.5 D-glucopyranose, also prefers an H H OH OH R X R H N 3.0 equtorial orientation. H OH 36% : 64% H H O 3.5 I 2.5 ratio of preference gives us some R R Br 2.8 insight that something is different one gauche H two gauche X Cl 3.0 interaction interactions F 4.0 H OH H OH preferred by generalized H O H O anomeric effect conversion into a methyl ether at the HO HO anomeric carbon produces a different HO H HO OMe H H o o o result from the above OH OH !!G anomeric effect (stabilization) = " !G (heterocycle) - " !G (steric) H OMe 67% : 33% H H electronic steric Franck, R.W., Tetrahedron, 1983, 39, 3251. different from reigning cyclohexane factor factor conformational analysis model For the anomeric stabilization to effect the conformation at all it must H OAc H OAc be more stabalizing then the sum of all of the steric factors H O H O AcO AcO Linear Example: AcO H AcO OAc Me Me O H H O O O often referred to as the OAc OAc gauche effect H OAc 86% : 14% H H Me Me substitution with more electronegative groups changes the observed ratio to a greater extent H OAc H OAc H O H O H OMe H H AcO AcO AcO H AcO Cl H H OAc OAc Me Me H Cl 94% : 6% H H H OMe Baran Group Meeting The Anomeric Effect Paul Krawczuk Further Evidence: Sovent also plays a role: Increase in anomeric stabilization associated with low solvent dipole 1.39 Å O O 1.43 Å O bond lenght: increased in the axial C-Cl bond (1.819Å) OMe O Cl e a versus the equatorial C-Cl bond (1.7181Å) OMe Cl Romers, C., et al. Topics Stereochem., 1969, 4, 39. Solvent Dipole % axial CCl4 2.2 83 benzene 2.3 82 CHCl a 3 4.7 71 O axial bond also observed to be longer then acetone 20.7 72 e MeOH 32.6 69 O equitorial bond in this constrained case MeCN 37.5 68 H2O 78.5 52 Lemieux, R.U., et al. Can. J. Chem. 1969, 47, 4427. Most widely accepted explanation for the anomeric effect: Other Explanations: hyperconjugation resonace form Dipole Stabilization: Opposing dipoles are stabalizing relative to aligned dipoles stabalizes axial conformation O O O O O 2 OR 1 OR OR OR OR destabalizing dipole interaction observed bond length for bond 2 is shorter then typical O-C bond and longer for bond 1 Closer Examination of Orbitals: Electrostatic Repulsion: Decreased electrostatic interactions are favored HOMO: non-bonding (nOxygen) H OR H O O OR H OR antiperiplanar destabalizing interaction of representation destabalizing interaction of electronegative atom gauche electronegative atom gauche OR with two lone pairs with only one lone pair LUMO: anti-bonding (!*C-O) This model is referd to as favored Antiperiplanar Lone Pair Hypothesis or ALPH stabalizing 2 electron interaction Net Anomeric Effect probably due to a combination of factors Baran Group Meeting The Anomeric Effect Paul Krawczuk The Exo-Anomeric Effect: Effect is observed in tetrahydrothiopyran: O Less significant contribution of anomeric effect with O same orbital overlap with S H tetrahydrothiopyran. However, since C-S bonds are longer H exocyclic oxygen observed as then C-C bonds 1,3-diaxial interactions are decreased and O stabalizing resonance form X as a result more axial isomer is seen then in the oxygen H O CH analogs 3 view O here minor contribution to overall resonance O relative to endo anomeric effect Effect is observed in dioxanes and dithianes: also can be stabalizing with equitorial substituents O simple extention of the tetrahydropyran case however O now there are two oxygens that take part in the resonance structure O view O X here O O S dithianes show an even greater preference for axial H H S substituents due to greater relaxation of 1,3-diaxial O X interactions CH3 endo anomeric effect is the dominant stabalizing O interaction with axial substituents, the exo anomeric H effect is stronger with equitorial subsitutents Effect is very minimal with amine nitrogens: Anomeric Effect=(exo-AEeq)-(exo-AEax+endo-AEax) O amine nitrogen not electronegative enough to produce a endo anomeric effect is absent in the equitorial conform so this term is zero NH2 significant anomeric effect on tetrahydropyran Praly, J. P., Lemieux, R.U., Can. J. Chem. 1987, 65, 213. Anomeric Effect of Radicals: Structures with N-C-X bonds where X is a strongly elcetronegative substitutent on piperadine are not stable so the effect cannot be studied on these systems H OAc H OAc H OAc H H O O Bu3Sn Bu3SnD AcO AcO H O Effects at sp2 centers: AcO H AcO H o AcO H -20 C H AcO H OAc OAc H R H X H OAc R O H D R R O increased barrier of rotation due to O Major Product O stabalizing interaction OAc H 98:2 H O H OAc AcO Bu3Sn AcO X H O R H OAc o AcO R O O H -20 C AcO R H H O R OAc O H H Giese, B., Dupuis, J., Tetrahedron Lett., 1983, 25, 1349. Baran Group Meeting The Anomeric Effect Paul Krawczuk Spiroketals: found in many natural products reviews: Perron, F., Albizati, K.F. Chem.Rev. 1989, 89, 1617-1661 Brimble, M.A., Furkert, D.P. Current Organic Chemistry, 2003, 7, 1461-1484. Anomeric Control of Product Distribution: OH structural conformations that depend on the anomeric effect H PTSA (cat.) OH MeOH H OMe O cat. O stereochemistry? acid O O HO OH O H kinetic H pathway thermodynamic 1 anomeric effect pathway O O H H HO O H O O H 2 anomeric effects O O no anomeric effects H H (most stable) (least stable) O O high energy twist-boat conformation required H for Bürgi-Dunitz angle O O kinetic H a conditions H H O e H 100:0 1 anomeric effect O a e O thermodynamic O General considerations for spiroketal ring systems. H conditions H Actual outcome will also be dependent on substituents 45:55 G.R.J. Thatcher (ed.), The Anomeric Effect and Related Stereolectronic Effects. ACS Symposium Series #539, 1993. The Reverse Anomeric Effect: Fact or Fiction? Preference for equatorial position with positively charged-electronegative substituents C. L. Perrin, Tetrahedron, 1995, 51, 11901. highly debated in the literature O O -often the charged species studied are bulky and sterics have a greater contributioin NR3 -dipole interactions in equitorial state are not stabalizing (evidence for this model) NR3 -no lone pair on axial subsituent to contribute to the exo-anomeric effect -the axial structure is weak (favored by elimination) and unlikely to exist, only the equitorial isomer is O preferred as a result O O O NR3 interesting exception: Me NR3 N N Me Ratcliffe, A.J. Fraser-Reid, B. J .Chem. Soc. Perkin Trans. 1 1990, 747-750. Baran Group Meeting The Anomeric Effect Paul Krawczuk Brief Sampling of Simple Spiroketal Natural Products: Non-Anomeric spiroketal: Agric. Biol. Chem., 1986. 50, 2693. From: Perron, F., Albizati, K.F. Chem.Rev. 1989, 89, 1617-1661 Org. Lett., 2004, 6(21), 3849-3852. Baran Group Meeting The Anomeric Effect Paul Krawczuk How can we use the anomeric effect? R=H Discaccharide from Apoptolidin: OH TESOTf R=TES SPh O Me OMe H H Me TBSO O Ph O OMe " < ! H H MeOH MeO Ph O OMe Me Me Me O O TEA TBSO OH O SF3N(Et)2 TBSO O OH OBn PhS SPh O MeO MeO 100% Me Ph H OTMS H PhS SnCl2 H O F Me OTMS MeOH SPh HCl OR OBn H H Ph O OMe bulky SPh groups used to discourage anomeric control of product anomeric control of axial OMe H Me Me O TBSO O Ra-Ni TBSO O SF3N(Et)2 MeO MeO O Danishefsky, S. Langer, M. J. Org. Chem.
Recommended publications
  • Stereoelectronic Effects in Nucleosides and Nucleotides and Their Structural Implications
    Stereoelectronic Effects in Nucleosides and Nucleotides and their Structural Implications (including Appendix on literature up to 2005) Christophe Thibaudeau, Parag Acharya and Jyoti Chattopadhyaya* *To whom correspondence should be addressed. E-mail: [email protected] F +4618554495 T +46184714577 www.boc.uu.se Department of Bioorganic Chemistry Biomedical Center, Uppsala University, Sweden 2 Christophe Thibaudeau, Parag Acharya and Jyoti Chattopadhyaya* Dept of Bioorganic Chemistry Uppsala University Biomedical Center, Box 581 S-751 23 Uppsala Dr C. Thibaudeau has completed his Ph.D in Feb, 1999 at the Dept of Bioorganic Chemistry under the supervision of Prof J. Chattopadhyaya Dr P. Acharya has completed his Ph.D in Dec, 2003 at the Dept of Bioorganic Chemistry under the supervision of Prof J. Chattopadhyaya Dr J. Chattopadhyaya is professor of Bioorganic Chemistry at the Uppsala University Use the following for citation in your reference: Uppsala University Press First Edition: 1999; Second Edition, 2005 Copyright © May, 1999 by J. Chattopadhyaya, C. Thibaudeau and P. Acharaya ISBN 91-506-1351-0 pp 166 Chattopadhyaya et al, "Stereoelectronic Effects in Nucleosides & Nucleotides and their Structural Implications", Dept of Bioorganic Chemistry, Box 581, Uppsala University, S-75123 Uppsala, Sweden, Ver 160205 [email protected] 3 The intrinsic flexibility of pentoses in natural PREFACE nucleosides and nucleotides, owing to their lower energy barrier for interconversions compared to the The three essential components of DNA and RNA are hexopyranoses, is dictated by the energetics of the aglycone, the pentofuranose sugar in β-D stereochemistry stereoelectronic effects, which simply can be tuned and the phosphodiester. The phosphates at the backbone and modulated by choice of substituents and their makes DNA/RNA to behave as polyelectrolyte, the pentose ionization state as well as by their complexation with sugar gives the intrinsic flexibility with relatively low energy potential ligands present in the medium.
    [Show full text]
  • Carbohydrates: Structure and Function
    CARBOHYDRATES: STRUCTURE AND FUNCTION Color index: . Very important . Extra Information. “ STOP SAYING I WISH, START SAYING I WILL” 435 Biochemistry Team *هذا العمل ﻻ يغني عن المصدر المذاكرة الرئيسي • The structure of carbohydrates of physiological significance. • The main role of carbohydrates in providing and storing of energy. • The structure and function of glycosaminoglycans. OBJECTIVES: 435 Biochemistry Team extra information that might help you 1-synovial fluid: - It is a viscous, non-Newtonian fluid found in the cavities of synovial joints. - the principal role of synovial fluid is to reduce friction between the articular cartilage of synovial joints during movement O 2- aldehyde = terminal carbonyl group (RCHO) R H 3- ketone = carbonyl group within (inside) the compound (RCOR’) 435 Biochemistry Team the most abundant organic molecules in nature (CH2O)n Carbohydrates Formula *hydrate of carbon* Function 1-provides important part of energy Diseases caused by disorders of in diet . 2-Acts as the storage form of energy carbohydrate metabolism in the body 3-structural component of cell membrane. 1-Diabetesmellitus. 2-Galactosemia. 3-Glycogen storage disease. 4-Lactoseintolerance. 435 Biochemistry Team Classification of carbohydrates monosaccharides disaccharides oligosaccharides polysaccharides simple sugar Two monosaccharides 3-10 sugar units units more than 10 sugar units Joining of 2 monosaccharides No. of carbon atoms Type of carbonyl by O-glycosidic bond: they contain group they contain - Maltose (α-1, 4)= glucose + glucose -Sucrose (α-1,2)= glucose + fructose - Lactose (β-1,4)= glucose+ galactose Homopolysaccharides Heteropolysaccharides Ketone or aldehyde Homo= same type of sugars Hetero= different types Ketose aldose of sugars branched unBranched -Example: - Contains: - Contains: Examples: aldehyde group glycosaminoglycans ketone group.
    [Show full text]
  • Structural Features
    1 Structural features As defined by the International Union of Pure and Applied Chemistry gly- cans are structures of multiple monosaccharides linked through glycosidic bonds. The terms sugar and saccharide are synonyms, depending on your preference for Arabic (“sukkar”) or Greek (“sakkēaron”). Saccharide is the root for monosaccha- rides (a single carbohydrate unit), oligosaccharides (3 to 20 units) and polysac- charides (large polymers of more than 20 units). Carbohydrates follow the basic formula (CH2O)N>2. Glycolaldehyde (CH2O)2 would be the simplest member of the family if molecules of two C-atoms were not excluded from the biochemical repertoire. Glycolaldehyde has been found in space in cosmic dust surrounding star-forming regions of the Milky Way galaxy. Glycolaldehyde is a precursor of several organic molecules. For example, reaction of glycolaldehyde with propenal, another interstellar molecule, yields ribose, a carbohydrate that is also the backbone of nucleic acids. Figure 1 – The Rho Ophiuchi star-forming region is shown in infrared light as captured by NASA’s Wide-field Infrared Explorer. Glycolaldehyde was identified in the gas surrounding the star-forming region IRAS 16293-2422, which is is the red object in the centre of the marked square. This star-forming region is 26’000 light-years away from Earth. Glycolaldehyde can react with propenal to form ribose. Image source: www.eso.org/public/images/eso1234a/ Beginning the count at three carbon atoms, glyceraldehyde and dihydroxy- acetone share the common chemical formula (CH2O)3 and represent the smallest carbohydrates. As their names imply, glyceraldehyde has an aldehyde group (at C1) and dihydoxyacetone a carbonyl group (at C2).
    [Show full text]
  • • for an Anomer, the OH Is Drawn Down. • for a Anomer, the OH Is
    How to draw a Haworth projection from an acyclic aldohexose Example: Convert D-mannose into a Haworth projection. CHO HO H HO H H OH H OH CH2OH D-mannose Step [1]: · Draw a hexagon and place the oxygen atom in the upper right corner. O O in upper right corner Step [2]: · Place the anomeric carbon on the first carbon clockwise from the oxygen. · For an anomer, the OH is drawn down. · For a anomer, the OH is drawn up. This C becomes the anomeric C. 1CHO O H O OH HO H 1 1 HO H OH H H OH anomer anomer H OH anomeric carbon - CH2OH first C clockwise from O · Always keep in mind that the anomeric carbon comes from the carbonyl carbon in the acyclic form. Step [3]: · Add the substituents of the three chiral carbons closest to the C=O. · The substituents on the right side of the Fischer projection are drawn down. · The substituents on the left are drawn up. CHO HO 2 H add H O H O H 3 C2 - C4 H HO H 4 OH OH 4 OH OH H 4 OH HO OH HO OH 3 2 3 2 H H H OH H H anomer anomer CH2OH Haworth convention - 2 Step [4]: · For D sugars the CH2OH group is drawn up. For L sugars the CH2OH group is drawn down. CHO CH2OH CH2OH HO H H O H H O H H HO H H OH OH OH OH H OH HO OH HO OH H H H OH H H anomer anomer CH2OH This OH on the right side CH OH is drawn up.
    [Show full text]
  • Fall 2014 HO OH O OH O OH
    Fall 2014! HO OH O OH O OH HO OH HO OH !-D-ribofuranose (Haworth) HO HO O O HO OH OH HO HO OH !-D-mannopyranose HO OH (Haworth) anomeric anomeric carbon carbon The anomeric monosaccharides, α-D-glucopyranose and β-D-glucopyranose, drawn as Fischer and Haworth projections, and as ball-and-stick models Upon cyclization, the carbonyl carbon becomes chiral and is referred to as the anomeric carbon. In the α-form, the anomeric OH (O1) is on the opposite side of the ring from the CH2OH group, and in the β-form, O1 is on the same side. The α- and β-forms are referred to as anomers or anomeric pairs, and they interconvert in aqueous solution via the acyclic (“linear”) form (anomerization). Aqueous solutions of D-glucose contain ~64% β-pyranose and ~36% α-pyranose. OH OH O HO HO H O HO OH OH CHO OH OH !-D-glucopyranose OH OH 37.6 % !-D-glucofuranose HO 0.11 % OH OH OH OH OH O HO H HO D-glucose O OH HO OH acyclic aldehyde OH 0.006 % OH "-D-glucopyranose OH 62.0 % "-D-glucofuranose -H2O +H2O 0.28 % CH(OH)2 OH HO OH OH OH D-glucose acyclic hydrate 0.004 % Monosaccharides that are capable of assuming a form in solution that contains a free carbonyl group can be oxidized by relatively mild oxidizing agents such as Fe+3 or Cu+2 (Fehling’s reaction). The saccharide is oxidized and the reagent is reduced.! CHO COO- OH OH HO cyclic and hydrate HO forms of D-glucose OH OH 2Cu+2 2Cu+ OH OH OH OH D-glucose D-gluconate acyclic aldehyde q " Phosphorylation can restrict the types of cyclization reactions of the acyclic carbonyl form.
    [Show full text]
  • Stereoelectronic Effects on Stability and Reactivity of Organic Molecules
    Stereoelectronic effects on stability and reactivity of organic molecules: from control of molecular conformations to faster cycloadditions and cyclizations Igor Alabugin, Florida State University Зимняя конференция молодых ученых по органической химии, January 20, 2015, Krasnovidovo Importance of delocalization This image cannot currently be displayed. Introduction What is the most stable structure/geometry in the following pairs? Take a second and make your guess: Is there a common theme? Am I going mad? From Alabugin, “Stereoelectronic effects” This image cannot currently be displayed. There is a common underlying effect It can be expanded to many common functional groups. See if you can spot it Good News: There are preferred geometries for interactions between molecules, or between parts of a molecule. These “rules of engagement” are called stereoelectronic effects. From Alabugin, “Stereoelectronic effects” This image cannot currently be displayed. Stereoelectronic effects Definition: Stereoelectronic effects – interactions of electronic orbitals in three dimensions. The typical stereoelectronic effect involves an electronic interaction which stabilizes a particular conformation or transition state and is fully expressed only when the correct geometry is achieved. Caveat: “stereoelectronic” is not the same as “steric + electronic”! Stereoelectronic effects are always stabilizing and reflect increased delocalization at favorable conformations. From Alabugin, “Stereoelectronic effects” This image cannot currently be displayed. Types of interactions Types of orbitals Directionality of electron transfer Types of resonance: negative, positive and neutral conjugation and hyperconjugation Donation of electron density from filled ‐orbitals into *‐orbitals or p‐type cationic centers is referred to as positive hyperconjugation. The interactions between filled or p‐orbitals and adjacent antibonding *‐orbitals are called negative hyperconjugation.
    [Show full text]
  • Structures of Monosaccharides Hemiacetals
    Disaccharides 10:51 AM 1 Disaccharides Definition • Disaccharides are carbohydrates consisting of two monosaccharide units linked via a glycosidic bond. Non-reducing disaccharide (1,1'-Glycosidic linkage) OH HO OH O HO O OH O OH OH HO OH HO O O HO OH + HO OH Glycosidic bond OH OH HO OH HO OH 6' 6 O O Reducing end 5' 1' 4 5 HO 4' O OH 3' 2' 3 2 1 HO OH HO OH Glycone Aglycone Reducing disaccharide (1,4'-Glycosidic linkage) • These disaccharides may be reducing or non-reducing sugars depending on the regiochemistry of the glycosidic 10:51 AM linkage between the two monosaccharides. 2 Nomenclature of Disaccharides • Since disaccharides are glycosides with two monosaccharide units linked through a glycosidic bond, their nomenclature requires the formulation of priority rules to identify which of the two monosaccharides of a disaccharide provides the parent name of the disaccharide and which one will be considered the substituent. • The nomenclature of disaccharides is based on the following considerations: i. Disaccharides with a free hemiacetal group (Reducing disaccharide) ii. Disaccharides without a free hemiacetal group (Non- Reducing Disaccharide) 10:51 AM 3 Nomenclature of Reducing Disaccharides • A disaccharide in which one glycosyl unit appears to have replaced the hydrogen atom of a hydroxyl group of the other is named as a glycosylglycose. The locants of the glycosidic linkage and the anomeric descriptor(s) must be given in the full name. • The parent sugar residue in such a reducing disaccharide is chosen on the basis of the following criteria: • The parent sugar residue is the one that includes the functional group most preferred by general principles of organic nomenclature.
    [Show full text]
  • Unit-2 Conformational Isomerism
    UNIT-2 CONFORMATIONAL ISOMERISM In chemistry, conformational isomerism is a form of stereoisomerism in which the isomers can be interconverted exclusively by rotations about formally single bonds. Such isomers are generally referred to as conformational isomers or conformers and specifically as rotamers when the rotation leading to different conformations is restricted (hindered) rotation, in the sense that there exists a rotational energy barrier that needs to be overcome to convert one conformer to another. Conformational isomers are thus distinct from the other classes of stereoisomers for which interconversion necessarily involves breaking and reforming of chemical bonds. The rotational barrier, or barrier to rotation, is the activation energy required to interconvert rotamers. Conformers of butane, shown in Newman projection. The two gauche as well as the anti form are staggered conformations Types of conformational isomerism Butane has three rotamers: two gauche conformers, which are enantiomeric and an anti conformer, where the four carbon centres are coplanar. The three eclipsed conformations with dihedral angles of 0°,120° and 240° are not considered to be rotamers, but are instead transition states. Some important examples of conformational isomerism include: 1. Linear alkane conformations with staggered, eclipsed and gauche conformers, and 2. Ring conformation o Cyclohexane conformations with chair and boat conformers. o Carbohydrate conformation 3. Atropisomerism- due to restricted rotation about a bond, a molecule can become chiral 4. Folding of molecules, where some shapes are stable and functional, but others are not. Conformations of Ethane While there are an infinite number of conformations about any sigma bond, in ethane two particular conformers are noteworthy and have special names.
    [Show full text]
  • 20H-Carbohydrates.Pdf
    Carbohydrates Carbohydrates are compounds that have the general formula CnH2nOn Because CnH2nOn can also be written Cn(H2O)n, they appear to be “hydrates of carbon” Carbohydrates are also called “sugars” or “saccharides” Carbohydrates can be either aldoses (ald is for aldehyde and ose means a carbohydrate) or ketoses (ket is for ketone) OH OH O OH CH2OH CH2OH OHC HOH2C OH OH OH OH An Aldose A Ketose (D-Glucose) (D-Fructose) Carbohydrates Due to the multiple chiral centers along a linear carbon chain for carbohydrates, Emil Fischer developed the “Fischer Projection” in order to represent these compounds Remember how to draw a Fischer projection: 1) View the linear carbon chain along the vertical axis (always place the more oxidized carbon [aldehyde in an aldose] towards the top) 2) The horizontal lines are coming out of the page toward the viewer 3) Will need to change the viewpoint for each carbon so the horizontal substituents are always pointing towards the viewer CHO OH OH H OH HO H CH2OH = OHC H OH OH OH H OH CH2OH Emil Fischer (1852-1919) Carbohydrates The aldoses are thus all related by having an aldehyde group at one end, a primary alcohol group at the other end, and the two ends connected by a series of H-C-OH groups CHO CHO CHO CHO CHO H OH H OH H OH H OH HO H CH2OH H OH H OH H OH HO H CH2OH H OH H OH HO H CH2OH H OH HO H CH2OH CH2OH Aldotriose Aldotetrose Aldopentose Aldohexose Aldohexose D-glyceraldehyde D-erythose D-ribose D-allose L-allose The D-aldoses are named according to glyceraldehyde, the D refers to the configurational
    [Show full text]
  • Chem 215-216 HH W12 Notes – Dr. Masato Koreeda - Page 1 of 11
    Chem 215-216 HH W12 Notes – Dr. Masato Koreeda - Page 1 of 11. Date: March 28, 2012 Chapters 14.8, 23-1,2, 5, and 7: Carbohydrates - Part II II. Glycosides – A general term used to describe organic molecules covalently bound to carbohydrate molecules (through anomeric bonds). (1) Formation of glycosides C1-epimers; anomers; diastereomers HO 6 HO 4 O O HO 5 2 1 HO 1 OH HO HO 3 anomeric carbon HO HO anomeric carbon α-anomer OH β-anomer CH3OH, 0.7 % HCl, 10 °C (short time) Kinetic conditions (for this reaction)! 6 CH2OH CH2OH HO H HO H 5 H OCH + OH 3 OHO H O H 1 1 anomeric carbon 4 anomeric carbon 3 2 H OCH3 H H H HO H HO α-anomer β-anomer methyl α-D-glucofuranoside methy β-D-glucofuranoside CH3OH, 4 % HCl, rt Thermodynamic conditions! HO 6 HO 4 O O HO 1 HO 5 2 1 + OCH3 HO HO 3 anomeric carbon HO anomeric carbon HO ~33% OCH3 β-anomer MAJOR PRODUCT α-anomer ~66% MINOR PRODUCT methyl α-D-glucopyranoside methyl β-D-glucopyranoside In general, (5-membered) furanosides are formed preferentially under the kinetic conditions, whereas (6-membered) pyranosides are formed under the thermodynamic conditions, i.e., more stable. Five membered systems have a number of eclipsing interactions, thus less stable. Chem 215-216 HH W12 Notes – Dr. Masato Koreeda - Page 2 of 11. Date: March 28, 2012 (2) Mechanism for the formation of anomeric glycosides HO 6 When protonation occurs HO H 4 O on the anometic OH.
    [Show full text]
  • 1 General Aspects of the Glycosidic Bond Formation Alexei V
    j1 1 General Aspects of the Glycosidic Bond Formation Alexei V. Demchenko 1.1 Introduction Since the first attempts at the turn of the twentieth century, enormous progress has been made in the area of the chemical synthesis of O-glycosides. However, it was only in the past two decades that the scientificworldhadwitnessedadramatic improvement the methods used for chemical glycosylation. The development of new classes of glycosyl donors has not only allowed accessing novel types of glycosidic linkages but also led to the discovery of rapid and convergent strategies for expeditious oligosaccharide synthesis. This chapter summarizes major prin- ciples of the glycosidic bond formation and strategies to obtain certain classes of compounds, ranging from glycosides of uncommon sugars to complex oligosac- charide sequences. 1.2 Major Types of O-Glycosidic Linkages There are two major types of O-glycosides, which are, depending on nomen- clature, most commonly defined as a-andb-, or 1,2-cis and 1,2-trans glycosides. The 1,2-cis glycosyl residues, a-glycosides for D-glucose, D-galactose, L-fucose, D-xylose or b-glycosides for D-mannose, L-arabinose, as well as their 1,2-trans counter- parts (b-glycosides for D-glucose, D-galactose, a-glycosides for D-mannose,etc.),are equally important components in a variety of natural compounds. Representative examples of common glycosides are shown in Figure 1.1. Some other types of glycosides, in particular 2-deoxyglycosides and sialosides, can be defined neither as 1,2-cis nor as 1,2-trans derivatives, yet are important targets because of their com- mon occurrence as components of many classes of natural glycostructures.
    [Show full text]
  • Studies on the D-Xylose Series Part I. Syntheses of 3-Acylamino-3, 5
    [Agr. Biol. Chem., Vol.27, No.10, p.689•`694, 1963] Studies on the D-Xylose Series Part I. Syntheses of 3-Acylamino-3,5-dideoxy-D-xylofuranose and Its Derivatives By Hiroshi KUZUHARA and Sakae EMOTO The Institute of Physical and Chemical Research, Tokyo Received June 20, 1963 Methyl 3-acetamido-3, 5-dideoxy-D-xylofuranosides (VIIIa, VIIIb) were prepared from D- xylose. The glycoside linkage of ƒ¿-anomer (VIIIa) was more easily hydrolyzed to 3-acetamido- 3, 5-dideoxy-D-xylose (X) by acid than that of ƒÀ-anomer (VIIIb). Reduction of X gave 3-ace- tamido-3, 5-dideoxy-D-xylitol (XIV), which was hygroscopic syrup. D-Xylose is obtained by hydrolysis of xylan L-threonine, one of the essential amino acids, which occurs in practically all land-plantslo. from them. Preparation of the optically active Because of wide botanical distribution and amino acid from the sugar derivatives are in abundance of xylan, D-xylose is one of the progress and will be noted in the following most obtainable sugars. In practice, D-xylose report. is prepared by hydrolysis of agricultural re- P.A.Levene and J. Compton3) prepared sidues such as corn cobs, cotton-seed hulls and 1, 2-O-isoplopylidene-5-deoxy-D-xylofuranose wheat straws. In spite of its abundance and (II) from 1, 2-O-isopropylidene-D-xylofuranose cheapness, D-xylose has no usefulness except (I) through three steps. its conversion to furfral. We mesylated II to 3-O-methanesulfonate In this series of paper, we will describe attempts of syntheses of useful matter by (III) which was converted by acetolysis to 1, 2-di-O-acetyl-3-O-mesyl-5-deoxy-D-xylofura- utilizing asymmetric carbons of D-xylose and nose (IV).
    [Show full text]