HPAI H2N8 finding in wild birds Mute Swan (Cygnus olor) Sweden
Swedish Board of Agriculture
National Veterinary Institute, Sweden
2015-04-20 17/3 all 5 swans M-pos 18/3, 2 swans H5-pos 19/3 sequencing of cleavage site of HA -> HPAI Another 5 swans 19/3 H5N8 confirmed. found 18/2-9/3. Stored 5 swans were found 9/2- Sequencing of complete in freezer and send to 13/2, Autopsy and genome. Virus closely SVA 11/3-16/3 . analysis at SVA 9/2- related to strains (H5N8) Suspected lead 17/2. Confirmed lead circulating in EU. poisoning 4 swans, poisoning (post mortem 20/3 reporting OIE, traumatic injury 1 & chemical analysis) all ADNS swans. swan. All five AI negative
10 feb 20 feb 1 mars 10 mars 20 mars Location, central Stockholm
No commercial poultry holdings in the vicinity
2015-04-20 A turkey Germany MV R2472 2014 A chicken Netherlands emc 3 2014 A eurasian wigeon Netherlands emc 1 2014 A turkey Germany MV R2472 2014 A eurasian wigeon Netherlands emc 2 2014 A chicken Netherlands emc 3 2014 A turkey Italy 14VIR7898 10 2014 A turkey Germany NI R3372 2014 A eurasian wigeon Netherlands emc 1 2014 A duck England 36254 14 A turkey Germany R2474 L00899 2014 A eurasian wigeon Netherlands emc 2 2014 94 A Chicken Netherlands 14015526 2014 2014 Europe A turkey Italy 14VIR7898 10 2014
A chicken Netherlands 14015531 2014 - 88 A MuteSwan Sweden SVA1503110277 SZ05022015 2015 A turkey Germany NI R3372 2014
A MuteSwan Sweden SVA1503110141 SZ0543 2015 88 A duck England 36038 14 A duck England 36254 14 A duck England 36226 14 A turkey Germany R2474 L00899 2014 A wigeon Sakha 1 2014 2.3.4.4 Clade A spot billed duck Korea H455 42 2014 A Chicken Netherlands 14015526 2014 A tundra swan Korea H411 2014 9893 A Korean native chicken Korea H257 2014 A chicken Netherlands 14015531 2014
A Baikal teal Korea H62 2014
A Coot Korea H81 2014 Koria South 88 A MuteSwan Sweden SVA1503110277 SZ0502 2015
A American green winged teal Washington 1957502014 2014 A MuteSwan Sweden SVA1503110277 SZ0543 2015 A Northern pintail Washington 40964 2014 100 Asian A gyrfalcon Washington 41088 6 2014 A duck England 36038 14
A turkey Washington 61 22 2014 -
99 A chicken Washington 61 9 2014 Hp A duck England 36226 14 -
A domestic duck Washington 61 16 2014 H5
100 America North A wigeon Sakha 1 2014
A turkey BC FAV10 2014 2014 A duck Jiangsu k1203 2010
100 A herring gull Sweden V1116 06 - 2015 A tufted duck Sweden V599 06 0.0005
A mink Sweden V907 06
100 A goosander Sweden V539 06 A tufted duck Sweden V1027 06 A tufted duck Sweden V998 06 A eagle owl Sweden V1218 2006 Phylogenetic tree of HA gene of H5-AIV
A tufted duck Sweden V526 06 2.2.1 & 2.2 Clade
A eagle owl Sweden V618 2006 2006 Sweden based on 1000bp of heamagglutinin (HA1) A Canada goose Sweden V978 06
A mute swan Sweden V827 06 gene. Phylogenetic tree was generated by
A smew Sweden V820 06 A duck Ireland 113 1983 the NJ method as implemented in MEGA 100 A mallard Sweden 49 2002 80 software. The bootstrap test (2000 93 A mallard Sweden 40 2002 A mallard Sweden 64 2002 replicates) are shown next to the branches A mallard Sweden 21 2002 99 A mallard Sweden 101020 2009 96 A mallard Sweden 101224 2009 A mallard Sweden 74 2003 100 A mallard Sweden 7 2002
A mallard Sweden 39 2002 LP -
90 H5 Eurasian
0.01
A turkey Germany MV R2472 2014 A chicken Netherlands emc 3 2014 A eurasian wigeon Netherlands emc 1 2014 A turkey Germany MV R2472 2014 A eurasian wigeon Netherlands emc 2 2014 A chicken Netherlands emc 3 2014 A turkey Italy 14VIR7898 10 2014 A turkey Germany NI R3372 2014 A eurasian wigeon Netherlands emc 1 2014 A duck England 36254 14 A turkey Germany R2474 L00899 2014 A eurasian wigeon Netherlands emc 2 2014 94 A Chicken Netherlands 14015526 2014 2014 Europe A turkey Italy 14VIR7898 10 2014
A chicken Netherlands 14015531 2014 - 88 A MuteSwan Sweden SVA1503110277 SZ05022015 2015 A turkey Germany NI R3372 2014
A MuteSwan Sweden SVA1503110141 SZ0543 2015 88 A duck England 36038 14 A duck England 36254 14 A duck England 36226 14 A turkey Germany R2474 L00899 2014 A wigeon Sakha 1 2014 2.3.4.4 Clade A spot billed duck Korea H455 42 2014 A Chicken Netherlands 14015526 2014 A tundra swan Korea H411 2014 9893 A Korean native chicken Korea H257 2014 A chicken Netherlands 14015531 2014
A Baikal teal Korea H62 2014
A Coot Korea H81 2014 Koria South 88 A MuteSwan Sweden SVA1503110277 SZ0502 2015
A American green winged teal Washington 1957502014 2014 A MuteSwan Sweden SVA1503110277 SZ0543 2015 A Northern pintail Washington 40964 2014 100 Asian A gyrfalcon Washington 41088 6 2014 A duck England 36038 14
A turkey Washington 61 22 2014 -
99 A chicken Washington 61 9 2014 Hp A duck England 36226 14 -
A domestic duck Washington 61 16 2014 H5
100 America North A wigeon Sakha 1 2014
A turkey BC FAV10 2014 2014 A duck Jiangsu k1203 2010
100 A herring gull Sweden V1116 06 - 2015 A tufted duck Sweden V599 06 0.0005
A mink Sweden V907 06
100 A goosander Sweden V539 06 A tufted duck Sweden V1027 06 A tufted duck Sweden V998 06 A eagle owl Sweden V1218 2006 Phylogenetic tree of HA gene of H5-AIV
A tufted duck Sweden V526 06 2.2.1 & 2.2 Clade
A eagle owl Sweden V618 2006 2006 Sweden based on 1000bp of heamagglutinin (HA1) A Canada goose Sweden V978 06
A mute swan Sweden V827 06 gene. Phylogenetic tree was generated by
A smew Sweden V820 06 A duck Ireland 113 1983 the NJ method as implemented in MEGA 100 A mallard Sweden 49 2002 80 software. The bootstrap test (2000 93 A mallard Sweden 40 2002 A mallard Sweden 64 2002 replicates) are shown next to the branches A mallard Sweden 21 2002 99 A mallard Sweden 101020 2009 96 A mallard Sweden 101224 2009 A mallard Sweden 74 2003 100 A mallard Sweden 7 2002
A mallard Sweden 39 2002 LP -
90 H5 Eurasian
0.01