Experiences Developing the Openuh Compiler and Runtime Infrastructure
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Evaluation of the Coarray Fortran Programming Model on the Example of a Lattice Boltzmann Code
Evaluation of the Coarray Fortran Programming Model on the Example of a Lattice Boltzmann Code Klaus Sembritzki Georg Hager Bettina Krammer Friedrich-Alexander University Friedrich-Alexander University Université de Versailles Erlangen-Nuremberg Erlangen-Nuremberg St-Quentin-en-Yvelines Erlangen Regional Computing Erlangen Regional Computing Exascale Computing Center (RRZE) Center (RRZE) Research (ECR) Martensstrasse 1 Martensstrasse 1 45 Avenue des Etats-Unis 91058 Erlangen, Germany 91058 Erlangen, Germany 78000 Versailles, France [email protected] [email protected] [email protected] Jan Treibig Gerhard Wellein Friedrich-Alexander University Friedrich-Alexander University Erlangen-Nuremberg Erlangen-Nuremberg Erlangen Regional Computing Erlangen Regional Computing Center (RRZE) Center (RRZE) Martensstrasse 1 Martensstrasse 1 91058 Erlangen, Germany 91058 Erlangen, Germany [email protected] [email protected] ABSTRACT easier to learn. The Lattice Boltzmann method is an explicit time-stepping sche- With the Fortran 2008 standard, coarrays became a native Fort- me for the numerical simulation of fluids. In recent years it has ran feature [2]. The “hybrid” nature of modern massively parallel gained popularity since it is straightforward to parallelize and well systems, which comprise shared-memory nodes built from multico- suited for modeling complex boundary conditions and multiphase re processor chips, can be addressed by the compiler and runtime flows. Starting from an MPI/OpenMP-parallel 3D prototype im- system by using shared memory for intra-node access to codimen- plementation of the algorithm in Fortran90, we construct several sions. Inter-node access may either by conducted using an existing coarray-based versions and compare their performance and requi- messaging layer such as MPI or SHMEM, or carried out natively red programming effort to the original code, demonstrating the per- using the primitives provided by the network infrastructure. -
A Comparison of Coarray Fortran, Unified Parallel C and T
Technical Report RAL-TR-2005-015 8 December 2005 Novel Parallel Languages for Scientific Computing ± a comparison of Co-Array Fortran, Unified Parallel C and Titanium J.V.Ashby Computational Science and Engineering Department CCLRC Rutherford Appleton Laboratory [email protected] Abstract With the increased use of parallel computers programming languages need to evolve to support parallelism. Three languages built on existing popular languages, are considered: Co-array Fortran, Universal Parallel C and Titanium. The features of each language which support paralleism are explained, a simple example is programmed and the current status and availability of the languages is reviewed. Finally we also review work on the performance of algorithms programmed in these languages. In most cases they perform favourably with the same algorithms programmed using message passing due to the much lower latency in their communication model. 1 1. Introduction As the use of parallel computers becomes increasingly prevalent there is an increased need for languages and programming methodologies which support parallelism. Ideally one would like an automatic parallelising compiler which could analyse a program written sequentially, identify opportunities for parallelisation and implement them without user knowledge or intervention. Attempts in the past to produce such compilers have largely failed (though automatic vectorising compilers, which may be regarded as one specific form of parallelism, have been successful, and the techniques are now a standard part of most optimising compilers for pipelined processors). As a result, interest in tools to support parallel programming has largely concentrated on two main areas: directive driven additions to existing languages and data-passing libraries. -
Cafe: Coarray Fortran Extensions for Heterogeneous Computing
2016 IEEE International Parallel and Distributed Processing Symposium Workshops CAFe: Coarray Fortran Extensions for Heterogeneous Computing Craig Rasmussen∗, Matthew Sottile‡, Soren Rasmussen∗ Dan Nagle† and William Dumas∗ ∗ University of Oregon, Eugene, Oregon †NCAR, Boulder, Colorado ‡Galois, Portland, Oregon Abstract—Emerging hybrid accelerator architectures are often simple tuning if the architecture is fundamentally different than proposed for inclusion as components in an exascale machine, previous ones. not only for performance reasons but also to reduce total power A number of options are available to an HPC programmer consumption. Unfortunately, programmers of these architectures face a daunting and steep learning curve that frequently requires beyond just using a serial language with MPI or OpenMP. learning a new language (e.g., OpenCL) or adopting a new New parallel languages have been under development for programming model. Furthermore, the distributed (and fre- over a decade, for example, Chapel and the PGAS languages quently multi-level) nature of the memory organization of clusters including Coarray Fortran (CAF). Options for heterogeneous of these machines provides an additional level of complexity. computing include usage of OpenACC, CUDA, CUDA For- This paper presents preliminary work examining how Fortran coarray syntax can be extended to provide simpler access to tran, and OpenCL for programming attached accelerator de- accelerator architectures. This programming model integrates the vices. Each of these choices provides the programmer with Partitioned Global Address Space (PGAS) features of Fortran abstractions over parallel systems that expose different levels with some of the more task-oriented constructs in OpenMP of detail about the specific systems to compile to, and as 4.0 and OpenACC. -
Coarray Fortran Runtime Implementation in Openuh
COARRAY FORTRAN RUNTIME IMPLEMENTATION IN OPENUH A Thesis Presented to the Faculty of the Department of Computer Science University of Houston In Partial Fulfillment of the Requirements for the Degree Master of Science By Debjyoti Majumder December 2011 COARRAY FORTRAN RUNTIME IMPLEMENTATION IN OPENUH Debjyoti Majumder APPROVED: Dr. Barbara Chapman, Chairman Dept. of Computer Science Dr. Jaspal Subhlok Dept. of Computer Science Dr. Terrence Liao TOTAL E&P Research & Technology USA, LLC Dean, College of Natural Sciences and Mathematics ii Acknowledgements I would like to express my gratitude to Dr. Barbara Chapman for providing financial support and for creating an excellent environment for research. I would like to thank my mentor Deepak Eachempati. Without his guidance, this work would not have been possible. I sincerely thank TOTAL S.A. for funding this project and Dr. Terrence Liao for his valuable inputs and help in performing experiments on TOTAL's hardware. I also thank the interns at TOTAL, Asma Farjallah, and France Boillod-Cerneux for the applications that I used for performance evaluation. I thank Hyoungjoon Jun for his earlier work on the CAF runtime. I thank Tony Curtis for his suggestions and excellent work on maintaining the infrastructure on which I ran my experiments. I thank Dr.Edgar Gabriel for answering all my questions and his help with using the shark cluster. I also thank the Berkeley Lab and PNNL's ARMCI developers for their guidance in using GASNet and ARMCI. Lastly, I would like to thank the Department of Computer Science for giving me the opportunity to be in this great country of USA and all my lab-mates and friends. -
Using GNU Fortran 95
Contributed by Steven Bosscher ([email protected]). Using GNU Fortran 95 Steven Bosscher For the 4.0.4 Version* Published by the Free Software Foundation 59 Temple Place - Suite 330 Boston, MA 02111-1307, USA Copyright c 1999-2005 Free Software Foundation, Inc. Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.1 or any later version published by the Free Software Foundation; with the Invariant Sections being “GNU General Public License” and “Funding Free Software”, the Front-Cover texts being (a) (see below), and with the Back-Cover Texts being (b) (see below). A copy of the license is included in the section entitled “GNU Free Documentation License”. (a) The FSF’s Front-Cover Text is: A GNU Manual (b) The FSF’s Back-Cover Text is: You have freedom to copy and modify this GNU Manual, like GNU software. Copies published by the Free Software Foundation raise funds for GNU development. i Short Contents Introduction ...................................... 1 GNU GENERAL PUBLIC LICENSE .................... 3 GNU Free Documentation License ....................... 9 Funding Free Software .............................. 17 1 Getting Started................................ 19 2 GFORTRAN and GCC .......................... 21 3 GFORTRAN and G77 ........................... 23 4 GNU Fortran 95 Command Options.................. 25 5 Project Status ................................ 33 6 Extensions ................................... 37 7 Intrinsic Procedures ............................ -
Parallel Computing
Parallel Computing Benson Muite [email protected] http://math.ut.ee/˜benson https://courses.cs.ut.ee/2014/paralleel/fall/Main/HomePage 6 October 2014 Parallel Programming Models and Parallel Programming Implementations Parallel Programming Models • Shared Memory • Distributed Memory • Simple computation and communication cost models Parallel Programming Implementations • OpenMP • MPI • OpenCL – C programming like language that aims to be manufacturer independent and allow for wide range of multithreaded devices • CUDA (Compute Unified Device Architecture) – Used for Nvidia GPUs, based on C/C++, makes numerical computations easier • Pthreads – older threaded programming interface, some legacy codes still around, lower level than OpenMP but not as easy to use • Universal Parallel C (UPC) – New generation parallel programming language, distributed array support, consider trying it • Coarray Fortran (CAF) – New generation parallel programming language, distributed array support, consider trying it • Julia (http://julialang.org/) – New serial and parallel programming language, consider trying it • Parallel Virtual Machine (PVM) – Older, has been replaced by MPI • OpenACC – brief mention • Not covered: Java threads, C++11 threads, Python Threads, High Performance Fortran (HPF) Parallel Programming Models: Flynn’s Taxonomy • (Single Instruction Single Data) – Serial • Single Program Multiple Data • Multiple Program Multiple Data • Multiple Instruction Single Data • Master Worker • Server Client Parallel Programming Models • loop parallelizm; -
User's Guide for Quantum ESPRESSO
User's Guide for Quantum ESPRESSO (v.6.1) Contents 1 Introduction 1 1.1 People . 3 1.2 Contacts . 4 1.3 Guidelines for posting to the mailing list . 4 1.4 Terms of use . 5 2 Installation 5 2.1 Download . 6 2.2 Prerequisites . 7 2.3 configure ....................................... 7 2.3.1 Manual configuration . 9 2.4 Libraries . 10 2.5 Compilation . 11 2.6 Running tests and examples . 12 2.7 Installation tricks and problems . 14 2.7.1 All architectures . 14 2.7.2 Intel Xeon Phi . 15 2.7.3 Cray machines . 15 2.7.4 IBM AIX . 16 2.7.5 IBM BlueGene . 16 2.7.6 Linux PC . 16 2.7.7 Linux PC clusters with MPI . 18 2.7.8 Mac OS . 19 3 Parallelism 21 3.1 Understanding Parallelism . 21 3.2 Running on parallel machines . 21 3.3 Parallelization levels . 22 3.3.1 Understanding parallel I/O . 24 3.4 Tricks and problems . 24 1 1 Introduction This guide gives a general overview of the contents and of the installation of Quantum ESPRESSO (opEn-Source Package for Research in Electronic Structure, Simulation, and Op- timization), version 6.1. The Quantum ESPRESSO distribution contains the core packages PWscf (Plane-Wave Self-Consistent Field) and CP (Car-Parrinello) for the calculation of electronic-structure prop- erties within Density-Functional Theory (DFT), using a Plane-Wave (PW) basis set and pseu- dopotentials. It also includes other packages for more specialized calculations: • PWneb: energy barriers and reaction pathways through the Nudged Elastic Band (NEB) method. -
CS 470 Spring 2018
CS 470 Spring 2018 Mike Lam, Professor Parallel Languages Graphics and content taken from the following: http://dl.acm.org/citation.cfm?id=2716320 http://chapel.cray.com/papers/BriefOverviewChapel.pdf http://arxiv.org/pdf/1411.1607v4.pdf https://en.wikipedia.org/wiki/Cilk Parallel languages ● Writing efficient parallel code is hard ● We've covered two generic paradigms ... – Shared-memory – Distributed message-passing ● … and three specific technologies (but all in C!) – Pthreads – OpenMP – MPI ● Can we make parallelism easier by changing our language? – Similarly: Can we improve programmer productivity? Productivity Output ● Productivity= Economic definition: Input ● What does this mean for parallel programming? – How do you measure input? – How do you measure output? Productivity Output ● Productivity= Economic definition: Input ● What does this mean for parallel programming? – How do you measure input? ● Bad idea: size of programming team ● "The Mythical Man Month" by Frederick Brooks – How do you measure output? ● Bad idea: lines of code Productivity vs. Performance ● General idea: Produce better code faster – Better can mean a variety of things: speed, robustness, etc. – Faster generally means time/personnel investment ● Problem: productivity often trades off with performance – E.g., Python vs. C or Matlab vs. Fortran – E.g., garbage collection or thread management Why? Complexity ● Core issue: handling complexity ● Tradeoff: developer effort vs. system effort – Hiding complexity from the developer increases the complexity of the -
Coarray Fortran: Past, Present, and Future
Coarray Fortran: Past, Present, and Future John Mellor-Crummey Department of Computer Science Rice University [email protected] CScADS 2009 Workshop on Leadership Computing 1 Rice CAF Team • Staff – Bill Scherer – Laksono Adhianto – Guohua Jin – Fengmei Zhao • Alumni – Yuri Dotsenko – Cristian Coarfa 2 Outline • Partitioned Global Address Space (PGAS) languages • Coarray Fortran, circa 1998 (CAF98) • Assessment of CAF98 • A look at the emerging Fortran 2008 standard • A new vision for Coarray Fortran 3 Partitioned Global Address Space Languages • Global address space – one-sided communication (GET/PUT) simpler than msg passing • Programmer has control over performance-critical factors – data distribution and locality control lacking in OpenMP – computation partitioning HPF & OpenMP compilers – communication placement must get this right • Data movement and synchronization as language primitives – amenable to compiler-based communication optimization 4 Outline • Partitioned Global Address Space (PGAS) languages • Coarray Fortran, circa 1998 (CAF98) • motivation & philosophy • execution model • co-arrays and remote data accesses • allocatable and pointer co-array components • processor spaces: co-dimensions and image indexing • synchronization • other features and intrinsic functions • Assessment of CAF98 • A look at the emerging Fortran 2008 standard • A new vision for Coarray Fortran 5 Co-array Fortran Design Philosophy • What is the smallest change required to make Fortran 90 an effective parallel language? • How can this change be expressed so that it is intuitive and natural for Fortran programmers? • How can it be expressed so that existing compiler technology can implement it easily and efficiently? 6 Co-Array Fortran Overview • Explicitly-parallel extension of Fortran 95 – defined by Numrich & Reid • SPMD parallel programming model • Global address space with one-sided communication • Two-level memory model for locality management – local vs. -
Coarrays in GNU Fortran
Coarrays in GNU Fortran Alessandro Fanfarillo [email protected] June 24th, 2014 Alessandro Fanfarillo Coarrays in GFortran June 24th, 2014 1 / 50 Introduction Coarray Fortran (also known as CAF) is a syntactic extension of Fortran 95/2003 which has been included in the Fortran 2008 standard. The main goal is to allow Fortran users to realize parallel programs without the burden of explicitly invoke communication functions or directives (MPI, OpenMP). The secondary goal is to express parallelism in a \platform-agnostic" way (no explicit shared or distributed paradigm). Coarrays are based on the Partitioned Global Address Space model (PGAS). Compilers which support Coarrays: Cray Compiler (Gold standard - Commercial) Intel Compiler (Commercial) Rice Compiler (Free - Rice University) OpenUH (Free - University of Houston) G95 (Coarray support not totally free - Not up to date) Alessandro Fanfarillo Coarrays in GFortran June 24th, 2014 2 / 50 PGAS Languages The PGAS model assumes a global memory address space that is logically partitioned and a portion of it is local to each process or thread. It means that a process can directly access a memory portion owned by another process. The model attempts to combine the advantages of a SPMD programming style for distributed memory systems (as employed by MPI) with the data referencing semantics of shared memory systems. Coarray Fortran. UPC (upc.gwu.edu). Titanium (titanium.cs.berkeley.edu). Chapel (Cray). X10 (IBM). Alessandro Fanfarillo Coarrays in GFortran June 24th, 2014 3 / 50 Coarray concepts A program is treated as if it were replicated at the start of execution, each replication is called an image. -
The Cascade High Productivity Programming Language
The Cascade High Productivity Programming Language Hans P. Zima University of Vienna, Austria and JPL, California Institute of Technology, Pasadena, CA ECMWF Workshop on the Use of High Performance Computing in Meteorology Reading, UK, October 25, 2004 Contents 1 IntroductionIntroduction 2 ProgrammingProgramming ModelsModels forfor HighHigh ProductivityProductivity ComputingComputing SystemsSystems 3 CascadeCascade andand thethe ChapelChapel LanguageLanguage DesignDesign 4 ProgrammingProgramming EnvironmentsEnvironments 5 ConclusionConclusion Abstraction in Programming Programming models and languages bridge the gap between ““reality”reality” and hardware – at differentdifferent levels ofof abstractionabstraction - e.g., assembly languages general-purpose procedural languages functional languages very high-level domain-specific languages Abstraction implies loss of information – gain in simplicity, clarity, verifiability, portability versus potential performance degradation The Emergence of High-Level Sequential Languages The designers of the very first highhigh level programming langulanguageage were aware that their successsuccess dependeddepended onon acceptableacceptable performance of the generated target programs: John Backus (1957): “… It was our belief that if FORTRAN … were to translate any reasonable scientific source program into an object program only half as fast as its hand-coded counterpart, then acceptance of our system would be in serious danger …” High-level algorithmic languages became generally accepted standards for -
Locally-Oriented Programming: a Simple Programming Model for Stencil-Based Computations on Multi-Level Distributed Memory Architectures
Locally-Oriented Programming: A Simple Programming Model for Stencil-Based Computations on Multi-Level Distributed Memory Architectures Craig Rasmussen, Matthew Sottile, Daniel Nagle, and Soren Rasmussen University of Oregon, Eugene, Oregon, USA [email protected] Abstract. Emerging hybrid accelerator architectures for high perfor- mance computing are often suited for the use of a data-parallel pro- gramming model. Unfortunately, programmers of these architectures face a steep learning curve that frequently requires learning a new language (e.g., OpenCL). Furthermore, the distributed (and frequently multi-level) nature of the memory organization of clusters of these machines provides an additional level of complexity. This paper presents preliminary work examining how programming with a local orientation can be employed to provide simpler access to accelerator architectures. A locally-oriented programming model is especially useful for the solution of algorithms requiring the application of a stencil or convolution kernel. In this pro- gramming model, a programmer codes the algorithm by modifying only a single array element (called the local element), but has read-only ac- cess to a small sub-array surrounding the local element. We demonstrate how a locally-oriented programming model can be adopted as a language extension using source-to-source program transformations. Keywords: domain specific language, stencil compiler, distributed mem- ory parallelism 1 Introduction Historically it has been hard to create parallel programs. The responsibility (and difficulty) of creating correct parallel programs can be viewed as being spread between the programmer and the compiler. Ideally we would like to have paral- lel languages that make it easy for the programmer to express correct parallel arXiv:1502.03504v1 [cs.PL] 12 Feb 2015 programs — and conversely it should be difficult to express incorrect parallel programs.