Information Theory Introduction
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Lecture 3: Entropy, Relative Entropy, and Mutual Information 1 Notation 2
EE376A/STATS376A Information Theory Lecture 3 - 01/16/2018 Lecture 3: Entropy, Relative Entropy, and Mutual Information Lecturer: Tsachy Weissman Scribe: Yicheng An, Melody Guan, Jacob Rebec, John Sholar In this lecture, we will introduce certain key measures of information, that play crucial roles in theoretical and operational characterizations throughout the course. These include the entropy, the mutual information, and the relative entropy. We will also exhibit some key properties exhibited by these information measures. 1 Notation A quick summary of the notation 1. Discrete Random Variable: U 2. Alphabet: U = fu1; u2; :::; uM g (An alphabet of size M) 3. Specific Value: u; u1; etc. For discrete random variables, we will write (interchangeably) P (U = u), PU (u) or most often just, p(u) Similarly, for a pair of random variables X; Y we write P (X = x j Y = y), PXjY (x j y) or p(x j y) 2 Entropy Definition 1. \Surprise" Function: 1 S(u) log (1) , p(u) A lower probability of u translates to a greater \surprise" that it occurs. Note here that we use log to mean log2 by default, rather than the natural log ln, as is typical in some other contexts. This is true throughout these notes: log is assumed to be log2 unless otherwise indicated. Definition 2. Entropy: Let U a discrete random variable taking values in alphabet U. The entropy of U is given by: 1 X H(U) [S(U)] = log = − log (p(U)) = − p(u) log p(u) (2) , E E p(U) E u Where U represents all u values possible to the variable. -
An Introduction to Information Theory
An Introduction to Information Theory Vahid Meghdadi reference : Elements of Information Theory by Cover and Thomas September 2007 Contents 1 Entropy 2 2 Joint and conditional entropy 4 3 Mutual information 5 4 Data Compression or Source Coding 6 5 Channel capacity 8 5.1 examples . 9 5.1.1 Noiseless binary channel . 9 5.1.2 Binary symmetric channel . 9 5.1.3 Binary erasure channel . 10 5.1.4 Two fold channel . 11 6 Differential entropy 12 6.1 Relation between differential and discrete entropy . 13 6.2 joint and conditional entropy . 13 6.3 Some properties . 14 7 The Gaussian channel 15 7.1 Capacity of Gaussian channel . 15 7.2 Band limited channel . 16 7.3 Parallel Gaussian channel . 18 8 Capacity of SIMO channel 19 9 Exercise (to be completed) 22 1 1 Entropy Entropy is a measure of uncertainty of a random variable. The uncertainty or the amount of information containing in a message (or in a particular realization of a random variable) is defined as the inverse of the logarithm of its probabil- ity: log(1=PX (x)). So, less likely outcome carries more information. Let X be a discrete random variable with alphabet X and probability mass function PX (x) = PrfX = xg, x 2 X . For convenience PX (x) will be denoted by p(x). The entropy of X is defined as follows: Definition 1. The entropy H(X) of a discrete random variable is defined by 1 H(X) = E log p(x) X 1 = p(x) log (1) p(x) x2X Entropy indicates the average information contained in X. -
Package 'Infotheo'
Package ‘infotheo’ February 20, 2015 Title Information-Theoretic Measures Version 1.2.0 Date 2014-07 Publication 2009-08-14 Author Patrick E. Meyer Description This package implements various measures of information theory based on several en- tropy estimators. Maintainer Patrick E. Meyer <[email protected]> License GPL (>= 3) URL http://homepage.meyerp.com/software Repository CRAN NeedsCompilation yes Date/Publication 2014-07-26 08:08:09 R topics documented: condentropy . .2 condinformation . .3 discretize . .4 entropy . .5 infotheo . .6 interinformation . .7 multiinformation . .8 mutinformation . .9 natstobits . 10 Index 12 1 2 condentropy condentropy conditional entropy computation Description condentropy takes two random vectors, X and Y, as input and returns the conditional entropy, H(X|Y), in nats (base e), according to the entropy estimator method. If Y is not supplied the function returns the entropy of X - see entropy. Usage condentropy(X, Y=NULL, method="emp") Arguments X data.frame denoting a random variable or random vector where columns contain variables/features and rows contain outcomes/samples. Y data.frame denoting a conditioning random variable or random vector where columns contain variables/features and rows contain outcomes/samples. method The name of the entropy estimator. The package implements four estimators : "emp", "mm", "shrink", "sg" (default:"emp") - see details. These estimators require discrete data values - see discretize. Details • "emp" : This estimator computes the entropy of the empirical probability distribution. • "mm" : This is the Miller-Madow asymptotic bias corrected empirical estimator. • "shrink" : This is a shrinkage estimate of the entropy of a Dirichlet probability distribution. • "sg" : This is the Schurmann-Grassberger estimate of the entropy of a Dirichlet probability distribution. -
Arxiv:1907.00325V5 [Cs.LG] 25 Aug 2020
Random Forests for Adaptive Nearest Neighbor Estimation of Information-Theoretic Quantities Ronan Perry1, Ronak Mehta1, Richard Guo1, Jesús Arroyo1, Mike Powell1, Hayden Helm1, Cencheng Shen1, and Joshua T. Vogelstein1;2∗ Abstract. Information-theoretic quantities, such as conditional entropy and mutual information, are critical data summaries for quantifying uncertainty. Current widely used approaches for computing such quantities rely on nearest neighbor methods and exhibit both strong performance and theoretical guarantees in certain simple scenarios. However, existing approaches fail in high-dimensional settings and when different features are measured on different scales. We propose decision forest-based adaptive nearest neighbor estimators and show that they are able to effectively estimate posterior probabilities, conditional entropies, and mutual information even in the aforementioned settings. We provide an extensive study of efficacy for classification and posterior probability estimation, and prove cer- tain forest-based approaches to be consistent estimators of the true posteriors and derived information-theoretic quantities under certain assumptions. In a real-world connectome application, we quantify the uncertainty about neuron type given various cellular features in the Drosophila larva mushroom body, a key challenge for modern neuroscience. 1 Introduction Uncertainty quantification is a fundamental desiderata of statistical inference and data science. In supervised learning settings it is common to quantify uncertainty with either conditional en- tropy or mutual information (MI). Suppose we are given a pair of random variables (X; Y ), where X is d-dimensional vector-valued and Y is a categorical variable of interest. Conditional entropy H(Y jX) measures the uncertainty in Y on average given X. On the other hand, mutual information quantifies the shared information between X and Y . -
Chapter 2: Entropy and Mutual Information
Chapter 2: Entropy and Mutual Information University of Illinois at Chicago ECE 534, Natasha Devroye Chapter 2 outline • Definitions • Entropy • Joint entropy, conditional entropy • Relative entropy, mutual information • Chain rules • Jensen’s inequality • Log-sum inequality • Data processing inequality • Fano’s inequality University of Illinois at Chicago ECE 534, Natasha Devroye Definitions A discrete random variable X takes on values x from the discrete alphabet . X The probability mass function (pmf) is described by p (x)=p(x) = Pr X = x , for x . X { } ∈ X University of Illinois at Chicago ECE 534, Natasha Devroye Copyright Cambridge University Press 2003. On-screen viewing permitted. Printing not permitted. http://www.cambridge.org/0521642981 You can buy this book for 30 pounds or $50. See http://www.inference.phy.cam.ac.uk/mackay/itila/ for links. 2 Probability, Entropy, and Inference Definitions Copyright Cambridge University Press 2003. On-screen viewing permitted. Printing not permitted. http://www.cambridge.org/0521642981 This chapter, and its sibling, Chapter 8, devote some time to notation. Just You can buy this book for 30 pounds or $50. See http://www.inference.phy.cam.ac.uk/mackay/itila/as the White Knight fordistinguished links. between the song, the name of the song, and what the name of the song was called (Carroll, 1998), we will sometimes 2.1: Probabilities and ensembles need to be careful to distinguish between a random variable, the v23alue of the i ai pi random variable, and the proposition that asserts that the random variable x has a particular value. In any particular chapter, however, I will use the most 1 a 0.0575 a Figure 2.2. -
GAIT: a Geometric Approach to Information Theory
GAIT: A Geometric Approach to Information Theory Jose Gallego Ankit Vani Max Schwarzer Simon Lacoste-Julieny Mila and DIRO, Université de Montréal Abstract supports. Optimal transport distances, such as Wasser- stein, have emerged as practical alternatives with theo- retical grounding. These methods have been used to We advocate the use of a notion of entropy compute barycenters (Cuturi and Doucet, 2014) and that reflects the relative abundances of the train generative models (Genevay et al., 2018). How- symbols in an alphabet, as well as the sim- ever, optimal transport is computationally expensive ilarities between them. This concept was as it generally lacks closed-form solutions and requires originally introduced in theoretical ecology to the solution of linear programs or the execution of study the diversity of ecosystems. Based on matrix scaling algorithms, even when solved only in this notion of entropy, we introduce geometry- approximate form (Cuturi, 2013). Approaches based aware counterparts for several concepts and on kernel methods (Gretton et al., 2012; Li et al., 2017; theorems in information theory. Notably, our Salimans et al., 2018), which take a functional analytic proposed divergence exhibits performance on view on the problem, have also been widely applied. par with state-of-the-art methods based on However, further exploration on the interplay between the Wasserstein distance, but enjoys a closed- kernel methods and information theory is lacking. form expression that can be computed effi- ciently. We demonstrate the versatility of our Contributions. We i) introduce to the machine learn- method via experiments on a broad range of ing community a similarity-sensitive definition of en- domains: training generative models, comput- tropy developed by Leinster and Cobbold(2012). -
Information Content and Error Analysis
43 INFORMATION CONTENT AND ERROR ANALYSIS Clive D Rodgers Atmospheric, Oceanic and Planetary Physics University of Oxford ESA Advanced Atmospheric Training Course September 15th – 20th, 2008 44 INFORMATION CONTENT OF A MEASUREMENT Information in a general qualitative sense: Conceptually, what does y tell you about x? We need to answer this to determine if a conceptual instrument design actually works • to optimise designs • Use the linear problem for simplicity to illustrate the ideas. y = Kx + ! 45 SHANNON INFORMATION The Shannon information content of a measurement of x is the change in the entropy of the • probability density function describing our knowledge of x. Entropy is defined by: • S P = P (x) log(P (x)/M (x))dx { } − Z M(x) is a measure function. We will take it to be constant. Compare this with the statistical mechanics definition of entropy: • S = k p ln p − i i i X P (x)dx corresponds to pi. 1/M (x) is a kind of scale for dx. The Shannon information content of a measurement is the change in entropy between the p.d.f. • before, P (x), and the p.d.f. after, P (x y), the measurement: | H = S P (x) S P (x y) { }− { | } What does this all mean? 46 ENTROPY OF A BOXCAR PDF Consider a uniform p.d.f in one dimension, constant in (0,a): P (x)=1/a 0 <x<a and zero outside.The entropy is given by a 1 1 S = ln dx = ln a − a a Z0 „ « Similarly, the entropy of any constant pdf in a finite volume V of arbitrary shape is: 1 1 S = ln dv = ln V − V V ZV „ « i.e the entropy is the log of the volume of state space occupied by the p.d.f. -
On a General Definition of Conditional Rényi Entropies
proceedings Proceedings On a General Definition of Conditional Rényi Entropies † Velimir M. Ili´c 1,*, Ivan B. Djordjevi´c 2 and Miomir Stankovi´c 3 1 Mathematical Institute of the Serbian Academy of Sciences and Arts, Kneza Mihaila 36, 11000 Beograd, Serbia 2 Department of Electrical and Computer Engineering, University of Arizona, 1230 E. Speedway Blvd, Tucson, AZ 85721, USA; [email protected] 3 Faculty of Occupational Safety, University of Niš, Carnojevi´ca10a,ˇ 18000 Niš, Serbia; [email protected] * Correspondence: [email protected] † Presented at the 4th International Electronic Conference on Entropy and Its Applications, 21 November–1 December 2017; Available online: http://sciforum.net/conference/ecea-4. Published: 21 November 2017 Abstract: In recent decades, different definitions of conditional Rényi entropy (CRE) have been introduced. Thus, Arimoto proposed a definition that found an application in information theory, Jizba and Arimitsu proposed a definition that found an application in time series analysis and Renner-Wolf, Hayashi and Cachin proposed definitions that are suitable for cryptographic applications. However, there is still no a commonly accepted definition, nor a general treatment of the CRE-s, which can essentially and intuitively be represented as an average uncertainty about a random variable X if a random variable Y is given. In this paper we fill the gap and propose a three-parameter CRE, which contains all of the previous definitions as special cases that can be obtained by a proper choice of the parameters. Moreover, it satisfies all of the properties that are simultaneously satisfied by the previous definitions, so that it can successfully be used in aforementioned applications. -
Chapter 4 Information Theory
Chapter Information Theory Intro duction This lecture covers entropy joint entropy mutual information and minimum descrip tion length See the texts by Cover and Mackay for a more comprehensive treatment Measures of Information Information on a computer is represented by binary bit strings Decimal numb ers can b e represented using the following enco ding The p osition of the binary digit 3 2 1 0 Bit Bit Bit Bit Decimal Table Binary encoding indicates its decimal equivalent such that if there are N bits the ith bit represents N i the decimal numb er Bit is referred to as the most signicant bit and bit N as the least signicant bit To enco de M dierent messages requires log M bits 2 Signal Pro cessing Course WD Penny April Entropy The table b elow shows the probability of o ccurrence px to two decimal places of i selected letters x in the English alphab et These statistics were taken from Mackays i b o ok on Information Theory The table also shows the information content of a x px hx i i i a e j q t z Table Probability and Information content of letters letter hx log i px i which is a measure of surprise if we had to guess what a randomly chosen letter of the English alphab et was going to b e wed say it was an A E T or other frequently o ccuring letter If it turned out to b e a Z wed b e surprised The letter E is so common that it is unusual to nd a sentence without one An exception is the page novel Gadsby by Ernest Vincent Wright in which -
Noisy Channel Coding
Noisy Channel Coding: Correlated Random Variables & Communication over a Noisy Channel Toni Hirvonen Helsinki University of Technology Laboratory of Acoustics and Audio Signal Processing [email protected] T-61.182 Special Course in Information Science II / Spring 2004 1 Contents • More entropy definitions { joint & conditional entropy { mutual information • Communication over a noisy channel { overview { information conveyed by a channel { noisy channel coding theorem 2 Joint Entropy Joint entropy of X; Y is: 1 H(X; Y ) = P (x; y) log P (x; y) xy X Y 2AXA Entropy is additive for independent random variables: H(X; Y ) = H(X) + H(Y ) iff P (x; y) = P (x)P (y) 3 Conditional Entropy Conditional entropy of X given Y is: 1 1 H(XjY ) = P (y) P (xjy) log = P (x; y) log P (xjy) P (xjy) y2A "x2A # y2A A XY XX XX Y It measures the average uncertainty (i.e. information content) that remains about x when y is known. 4 Mutual Information Mutual information between X and Y is: I(Y ; X) = I(X; Y ) = H(X) − H(XjY ) ≥ 0 It measures the average reduction in uncertainty about x that results from learning the value of y, or vice versa. Conditional mutual information between X and Y given Z is: I(Y ; XjZ) = H(XjZ) − H(XjY; Z) 5 Breakdown of Entropy Entropy relations: Chain rule of entropy: H(X; Y ) = H(X) + H(Y jX) = H(Y ) + H(XjY ) 6 Noisy Channel: Overview • Real-life communication channels are hopelessly noisy i.e. introduce transmission errors • However, a solution can be achieved { the aim of source coding is to remove redundancy from the source data -
Networked Distributed Source Coding
Networked distributed source coding Shizheng Li and Aditya Ramamoorthy Abstract The data sensed by differentsensors in a sensor network is typically corre- lated. A natural question is whether the data correlation can be exploited in innova- tive ways along with network information transfer techniques to design efficient and distributed schemes for the operation of such networks. This necessarily involves a coupling between the issues of compression and networked data transmission, that have usually been considered separately. In this work we review the basics of classi- cal distributed source coding and discuss some practical code design techniques for it. We argue that the network introduces several new dimensions to the problem of distributed source coding. The compression rates and the network information flow constrain each other in intricate ways. In particular, we show that network coding is often required for optimally combining distributed source coding and network information transfer and discuss the associated issues in detail. We also examine the problem of resource allocation in the context of distributed source coding over networks. 1 Introduction There are various instances of problems where correlated sources need to be trans- mitted over networks, e.g., a large scale sensor network deployed for temperature or humidity monitoring over a large field or for habitat monitoring in a jungle. This is an example of a network information transfer problem with correlated sources. A natural question is whether the data correlation can be exploited in innovative ways along with network information transfer techniques to design efficient and distributed schemes for the operation of such networks. This necessarily involves a Shizheng Li · Aditya Ramamoorthy Iowa State University, Ames, IA, U.S.A. -
Shannon Entropy and Kolmogorov Complexity
Information and Computation: Shannon Entropy and Kolmogorov Complexity Satyadev Nandakumar Department of Computer Science. IIT Kanpur October 19, 2016 This measures the average uncertainty of X in terms of the number of bits. Shannon Entropy Definition Let X be a random variable taking finitely many values, and P be its probability distribution. The Shannon Entropy of X is X 1 H(X ) = p(i) log : 2 p(i) i2X Shannon Entropy Definition Let X be a random variable taking finitely many values, and P be its probability distribution. The Shannon Entropy of X is X 1 H(X ) = p(i) log : 2 p(i) i2X This measures the average uncertainty of X in terms of the number of bits. The Triad Figure: Claude Shannon Figure: A. N. Kolmogorov Figure: Alan Turing Just Electrical Engineering \Shannon's contribution to pure mathematics was denied immediate recognition. I can recall now that even at the International Mathematical Congress, Amsterdam, 1954, my American colleagues in probability seemed rather doubtful about my allegedly exaggerated interest in Shannon's work, as they believed it consisted more of techniques than of mathematics itself. However, Shannon did not provide rigorous mathematical justification of the complicated cases and left it all to his followers. Still his mathematical intuition is amazingly correct." A. N. Kolmogorov, as quoted in [Shi89]. Kolmogorov and Entropy Kolmogorov's later work was fundamentally influenced by Shannon's. 1 Foundations: Kolmogorov Complexity - using the theory of algorithms to give a combinatorial interpretation of Shannon Entropy. 2 Analogy: Kolmogorov-Sinai Entropy, the only finitely-observable isomorphism-invariant property of dynamical systems.